MD14G1027100.v1.1

Has 11 Blast hits to 11 proteins in 5 species Archae - 0

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0017168
Physical Location & Seq
Reverse (-)
2467861 .. 2469372
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1027100.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGCGGATTCGACATTTCCAGCAGCTAATGTGGATGCAGAATTGAATCCAGGAACTAACAAGAACTTTGAGGAAGACAGTGGATCGTCTCTAGTAACTACCTCCAAGGAAATCAAGGACAAATTAGAGGCTGAAGAGAGAAAGCAGCAGAAGGAGAAGGAGAAGGAGAGGGAGAAGGAGAAGAAAGATGCAGCGCAGACGCTCAAGAAAAGCATTATTATCTCAGCGGTGGTCGTGGCTGTAGTAGGCGCGATATTTGCCCTAACCAAGAAATTGAGAGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.51

Weight (kDa)

7.88

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52620
malus_domestica MD12G1027000.v1.1 MD12G1088600.v1.1 MD14G1027100.v1.1
prunus_persica Prupe.7G104600_v2.0.a1
pyrus_communis pycom14g02580
rosa_chinensis RchiOBHm_Chr3g0474201
rosa_multiflora Rmu_sc0015051.1_g000003
rosa_samantha Rh3AG189900 Rh3BG219100 Rh3CG214500 Rh3DG214600
rosa_wichuraiana Rw3G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 251
AciI CCGC 2 cut(s) 5, 227
AclWI GGATC 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 153
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 91
ApeKI GCWGC 3 cut(s) 23, 145, 191
AspLEI GCGC 2 cut(s) 196, 251
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 3 cut(s) 35, 157, 203
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 3 cut(s) 24, 146, 192
BlsI GCNGC 3 cut(s) 25, 147, 193
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 25, 178
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 3 cut(s) 35, 157, 203
Bsh1236I CGCG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 2 cut(s) 5, 227
BspCNI CTCAG 1 cut(s) 236
BspFNI CGCG 1 cut(s) 251
BspPI GGATC 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 2 cut(s) 196, 251
BstKTI GATC 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 240
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 3 cut(s) 35, 157, 203
BstV2I GAAGAC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 85
CfoI GCGC 2 cut(s) 196, 251
CseI GACGC 1 cut(s) 208
CviJI RGCY 3 cut(s) 26, 131, 239
CviKI_1 RGCY 3 cut(s) 26, 131, 239
DdeI CTNAG 1 cut(s) 223
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 24, 146, 192
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 24, 146, 192
FspBI CTAG 1 cut(s) 92
GlaI GCGC 2 cut(s) 195, 250
GluI GCNGC 3 cut(s) 24, 146, 192
HgaI GACGC 1 cut(s) 208
HhaI GCGC 2 cut(s) 196, 251
Hin6I GCGC 2 cut(s) 194, 249
HinP1I GCGC 2 cut(s) 194, 249
HinfI GANTC 2 cut(s) 8, 46
Hpy188III TCNNGA 1 cut(s) 205
HpyAV CCTTC 4 cut(s) 145, 151, 157, 169
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 38, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 223
HspAI GCGC 2 cut(s) 194, 249
Kzo9I GATC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 33, 36, 63
Lsp1109I GCAGC 3 cut(s) 35, 157, 203
LweI GCATC 2 cut(s) 25, 178
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 3 cut(s) 86, 146, 193
MluCI AATT 3 cut(s) 41, 122, 272
MnlI CCTC 4 cut(s) 64, 112, 121, 162
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 8, 46
PfoI TCCNGGA 1 cut(s) 49
PkrI GCNGC 3 cut(s) 25, 147, 193
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
SatI GCNGC 3 cut(s) 24, 146, 192
Sau3AI GATC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 51
SetI ASST 2 cut(s) 28, 104
SfaNI GCATC 2 cut(s) 25, 178
SfcI CTRYAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 41, 122, 272
SsiI CCGC 2 cut(s) 5, 227
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 41, 122, 272
TfiI GAWTC 2 cut(s) 8, 46
TscAI CASTG 1 cut(s) 85
TseI GCWGC 3 cut(s) 23, 145, 191
TspRI CASTG 1 cut(s) 85
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.