Prupe.7G104600_v2.0.a1

Has 11 Blast hits to 11 proteins in 5 species Archae - 0

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017168
Physical Location & Seq
Forward (+)
13371052 .. 13372211
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G104600.1

Sequence Viewer

Length: 297 bp
ATGGCAAGCCCAAAGCAAACTGATGCAGGCACCGGAGATTCGAAATTTCCTGCTGCTAATGTGGATTTAGAATTGAATCCAGGCAAGAACAAGAATTTTGAAGAAGACAGTGGGCCATCTCTAGTAGCTACCTCCAAGGAGATTAAGGAACAAATAGAGGCTGAAGATAAGAAGAAAAAGGACCAGGAGAAGAAAGATGCAATCCAGACTCTCAAGAAAAGCGTTATAGTCTCGGCGGTGATCGTGGCTCTGGCAGGGGCAATTTTTGCTATAACCAAGAAATTGAGAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.57

Weight (kDa)

8.8

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52620
malus_domestica MD12G1027000.v1.1 MD12G1088600.v1.1 MD14G1027100.v1.1
prunus_persica Prupe.7G104600_v2.0.a1
pyrus_communis pycom14g02580
rosa_chinensis RchiOBHm_Chr3g0474201
rosa_multiflora Rmu_sc0015051.1_g000003
rosa_samantha Rh3AG189900 Rh3BG219100 Rh3CG214500 Rh3DG214600
rosa_wichuraiana Rw3G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AciI CCGC 1 cut(s) 236
AcsI RAATTY 2 cut(s) 44, 94
AcuI CTGAAG 1 cut(s) 183
AgsI TTSAA 2 cut(s) 76, 101
AjnI CCWGG 2 cut(s) 79, 183
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 235
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 44, 94
AspS9I GGNCC 2 cut(s) 113, 181
AsuHPI GGTGA 1 cut(s) 250
AsuII TTCGAA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 81, 185
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 81, 185
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 113, 181
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 81, 185
BmsI GCATC 2 cut(s) 13, 187
BpiI GAAGAC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 32
BseBI CCWGG 2 cut(s) 81, 185
BseDI CCNNGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 115
BshNI GGYRCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 41
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 2 cut(s) 81, 185
Bst4CI ACNGT 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 7, 28
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 2 cut(s) 81, 185
BstSCI CCNGG 2 cut(s) 79, 183
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 7, 28
Cfr13I GGNCC 2 cut(s) 113, 181
CviJI RGCY 5 cut(s) 9, 115, 128, 161, 248
CviKI_1 RGCY 5 cut(s) 9, 115, 128, 161, 248
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 79, 183
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaiI YATR 2 cut(s) 227, 272
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 33
HinfI GANTC 3 cut(s) 38, 76, 208
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 205, 214
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 26, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 240
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 13, 187
MaeI CTAG 1 cut(s) 122
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 5 cut(s) 113, 116, 176, 184, 202
MluCI AATT 5 cut(s) 44, 71, 94, 261, 281
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 2 cut(s) 142, 151
MseI TTAA 1 cut(s) 144
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 2 cut(s) 81, 185
MvaI CCWGG 2 cut(s) 81, 185
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 31
NmeAIII GCCGAG 1 cut(s) 212
NspV TTCGAA 1 cut(s) 41
PfeI GAWTC 2 cut(s) 38, 76
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 79, 183
PspGI CCWGG 2 cut(s) 79, 183
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 2 cut(s) 113, 181
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 2 cut(s) 113, 181
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 81, 185
SetI ASST 2 cut(s) 130, 134
SfaNI GCATC 2 cut(s) 13, 187
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 5 cut(s) 44, 71, 94, 261, 281
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 79, 183
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 41
TasI AATT 5 cut(s) 44, 71, 94, 261, 281
TfiI GAWTC 2 cut(s) 38, 76
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 53
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 2 cut(s) 44, 94
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.