Rh3BG219100

Has 11 Blast hits to 11 proteins in 5 species Archae - 0

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
19741588 .. 19742381
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG219100.1

Sequence Viewer

Length: 291 bp
ATGGCAAGCCCAAAAATGAAGGAGGCAGCTTCAAAATTTCCAGAAGGTGATGCAGATGCAGAACTGAACCCAAGCAAACAGAAGAGTGTTGAAGTGGATCCCAAAGCGTCTGAAGTTACCTCCTTGCAGATCAAGCAACGAGCAGAGGCTGAAGACAACAAGAGAAAGGAAAAGAAGAAAGAGAAGAATGAATCGGTGCAAAAGCTCAAAACAACCATTGTAGTCTCAGGGGTAATTGTGGCTCTGATTGGGGCTATTTTCGCCTTAACCAAGAAAATGAGAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.58

Weight (kDa)

9.58

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52620
malus_domestica MD12G1027000.v1.1 MD12G1088600.v1.1 MD14G1027100.v1.1
prunus_persica Prupe.7G104600_v2.0.a1
pyrus_communis pycom14g02580
rosa_chinensis RchiOBHm_Chr3g0474201
rosa_multiflora Rmu_sc0015051.1_g000003
rosa_samantha Rh3AG189900 Rh3BG219100 Rh3CG214500 Rh3DG214600
rosa_wichuraiana Rw3G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 92, 105
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 2 cut(s) 132, 171
AgsI TTSAA 2 cut(s) 33, 92
AluBI AGCT 2 cut(s) 29, 205
AluI AGCT 2 cut(s) 29, 205
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 2 cut(s) 92, 105
AlwNI CAGNNNCTG 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 59
BamHI GGATCC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 229
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 99
BmsI GCATC 2 cut(s) 40, 46
BpiI GAAGAC 1 cut(s) 159
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 229
Bsp143I GATC 2 cut(s) 97, 129
BspCNI CTCAG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 2 cut(s) 92, 105
BssMI GATC 2 cut(s) 97, 129
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 226
BstKTI GATC 2 cut(s) 100, 132
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 2 cut(s) 97, 129
BstMWI GCNNNNNNNGC 2 cut(s) 133, 260
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 149
CseI GACGC 1 cut(s) 96
CviJI RGCY 6 cut(s) 9, 29, 149, 205, 242, 254
CviKI_1 RGCY 6 cut(s) 9, 29, 149, 205, 242, 254
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 99, 131
DpnII GATC 2 cut(s) 97, 129
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco57I CTGAAG 2 cut(s) 132, 171
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HgaI GACGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 112, 246
Hpy188III TCNNGA 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 13, 38
HpyCH4V TGCA 4 cut(s) 53, 59, 127, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 260
HpyF3I CTNAG 1 cut(s) 226
Kzo9I GATC 2 cut(s) 97, 129
LpnPI CCDG 2 cut(s) 54, 213
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 40, 46
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 99, 131
MboI GATC 2 cut(s) 97, 129
MboII GAAGA 4 cut(s) 94, 164, 187, 196
MflI RGATCY 1 cut(s) 97
MluCI AATT 2 cut(s) 35, 234
MnlI CCTC 3 cut(s) 16, 130, 139
MseI TTAA 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 133, 260
NdeII GATC 2 cut(s) 97, 129
NlaIV GGNNCC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 97
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 97, 129
SetI ASST 4 cut(s) 31, 49, 122, 207
SfaNI GCATC 2 cut(s) 40, 46
SgeI CNNG 9 cut(s) 18, 53, 84, 136, 145, 152, 172, 240, 283
Sse9I AATT 2 cut(s) 35, 234
TasI AATT 2 cut(s) 35, 234
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 32, 204
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.