Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0017902

Physical Location & Seq

Genomic Coordinates Reverse (-)

1694642 .. 1695709

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1023500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTGCCTTCAGACCCACAAGACGAGGAAAATCCAACAAGCAGCAAAAGTTGGTGCAATGAGAGCTGCTGGAGAAGGTGGAACAAGAAAAGGAAGCAGAAATGGTCGTAGACAAGCTAGAAGCATTGCGATTTTCATCTTCTGTGTCGTTTTAATATTTGCTCAAACGAGTAATTTGATGGTTTTTGCCAGTACTCCTACTACTAGTACCAGTCACGACAATGAGTGGACCGGTCGGATAATGAGGTCATCGCCGCAGAGGAAAGCACGATTTTTGGGCAAGGTATCGTTTTACGCACCTTCGAGTAGTCCATCTCACCATGTTCATCGTCTTCCGGCGATCAACGGTGACCCAGGCAAGCTATACGGAGATGACAAGAGAATAGTTCATACAGGTCCAAACCCTCTTCACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.18

Weight (kDa)

11.36

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70895 AT1G70895 AT2G01505
malus_domestica	MD13G1023500.v1.1 MD16G1026400.v1.1
prunus_persica	Prupe.1G327000_v2.0.a1
pyrus_communis	pycom13g02210
rosa_chinensis	RchiOBHm_Chr4g0441591
rosa_roxburghii	Rroxscaffold_5G00382430
rosa_samantha	Rh4AG386200
rosa_wichuraiana	Rw4G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	254
AfaI	GTAC	2 cut(s)	193, 208
AgeI	ACCGGT	1 cut(s)	230
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	65, 116, 361
AluI	AGCT	3 cut(s)	65, 116, 361
ApeKI	GCWGC	2 cut(s)	41, 65
AsiGI	ACCGGT	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	228, 395
AsuHPI	GGTGA	2 cut(s)	308, 359
AvaII	GGWCC	2 cut(s)	228, 395
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	52, 53
BccI	CCATC	2 cut(s)	172, 319
BciT130I	CCWGG	1 cut(s)	354
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	117, 204
BisI	GCNGC	3 cut(s)	42, 66, 254
BlsI	GCNGC	3 cut(s)	43, 67, 255
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	2 cut(s)	228, 395
BmgT120I	GGNCC	2 cut(s)	228, 395
BmrFI	CCNGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	189, 210
Bse3DI	GCAATG	2 cut(s)	63, 123
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	134
BseMI	GCAATG	2 cut(s)	63, 123
BseNI	ACTGG	2 cut(s)	189, 210
BseXI	GCAGC	2 cut(s)	52, 53
Bsh1285I	CGRYCG	1 cut(s)	235
BshTI	ACCGGT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	231, 335
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	63, 123
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	189, 210
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	359
BstEII	GGTNACC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	339
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	52, 53
BstV2I	GAAGAC	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	228, 395
Csp6I	GTAC	2 cut(s)	192, 207
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	3 cut(s)	65, 116, 361
CviKI_1	RGCY	3 cut(s)	65, 116, 361
CviQI	GTAC	2 cut(s)	192, 207
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	228, 395
Eco91I	GGTNACC	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	323
FaiI	YATR	3 cut(s)	321, 364, 390
FatI	CATG	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	42, 66, 254
Fsp4HI	GCNGC	3 cut(s)	42, 66, 254
FspBI	CTAG	2 cut(s)	117, 204
GluI	GCNGC	3 cut(s)	42, 66, 254
GsuI	CTGGAG	1 cut(s)	90
HapII	CCGG	2 cut(s)	231, 335
Hin1II	CATG	1 cut(s)	323
HpaII	CCGG	2 cut(s)	231, 335
HphI	GGTGA	2 cut(s)	308, 359
Hpy166II	GTNNAC	2 cut(s)	110, 228
Hpy188I	TCNGA	2 cut(s)	12, 237
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	110, 228
HpyAV	CCTTC	3 cut(s)	17, 68, 309
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	339
LpnPI	CCDG	8 cut(s)	54, 202, 223, 244, 339, 348, 366, 378
Lsp1109I	GCAGC	2 cut(s)	52, 53
MaeI	CTAG	2 cut(s)	117, 204
MaeIII	GTNAC	2 cut(s)	212, 347
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	3 cut(s)	130, 323, 398
MluCI	AATT	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	58, 215
MnlI	CCTC	4 cut(s)	18, 237, 252, 414
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	2 cut(s)	231, 335
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	1 cut(s)	323
NmuCI	GTSAC	2 cut(s)	212, 347
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	43, 67, 255
Psp6I	CCWGG	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	228, 395
RsaI	GTAC	2 cut(s)	193, 208
RsaNI	GTAC	2 cut(s)	192, 207
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	3 cut(s)	42, 66, 254
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	2 cut(s)	228, 395
ScaI	AGTACT	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	8 cut(s)	67, 79, 118, 248, 285, 301, 363, 397
SinI	GGWCC	2 cut(s)	228, 395
SmiMI	CAYNNNNRTG	1 cut(s)	219
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	254
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	2 cut(s)	117, 204
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	302
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseFI	GTSAC	2 cut(s)	212, 347
TseI	GCWGC	2 cut(s)	41, 65
Tsp45I	GTSAC	2 cut(s)	212, 347
TspDTI	ATGAA	3 cut(s)	124, 314, 377
TspGWI	ACGGA	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	228, 395
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	2 cut(s)	117, 204
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.