pycom13g02210

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0017902
Physical Location & Seq
Reverse (-)
1539849 .. 1540208
360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02210.1

Sequence Viewer

Length: 360 bp
ATGAGAGCTGCTGGAGAAGGTGGAACAAGAAAAGGAAGCAGAAATGGCCGTAGAGAAGCTAGAAGCATTGCGATTTTCATCTTCTGTGTCGTTTTAATATTTGCTCAAACGAGTAATTTGATGGTTTTTGCCAGTACTCCTACTACTAGTACCAGTCACGACAATGAGTGGACCGGTCCGATAATGAGGTCATCGCCGCAGAGGAAAGCACGAGTTTTGGGCAAGGTATCGTTTTACGCACCTTCGAGTAGTCCATCTCACCATGTTCATCGTCTTCCGGCGATCAACGGTGACCCGGGCAAGCTATACGGAGATGACAAGAGAATAGTTCATACGGGTCCAAACCCTCTTCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0045165 GO:0045168 GO:0048046 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.98

Weight (kDa)

10.9

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70895 AT1G70895 AT2G01505
malus_domestica MD13G1023500.v1.1 MD16G1026400.v1.1
prunus_persica Prupe.1G327000_v2.0.a1
pyrus_communis pycom13g02210
rosa_chinensis RchiOBHm_Chr4g0441591
rosa_roxburghii Rroxscaffold_5G00382430
rosa_samantha Rh4AG386200
rosa_wichuraiana Rw4G033360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 46
AfaI GTAC 2 cut(s) 136, 151
AgeI ACCGGT 1 cut(s) 173
AhlI ACTAGT 1 cut(s) 146
AluBI AGCT 3 cut(s) 8, 59, 304
AluI AGCT 3 cut(s) 8, 59, 304
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 8
AsiGI ACCGGT 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 171, 176, 338
AsuC2I CCSGG 2 cut(s) 296, 297
AsuHPI GGTGA 2 cut(s) 251, 302
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 3 cut(s) 171, 176, 338
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 266
BccI CCATC 2 cut(s) 115, 262
BceAI ACGGC 1 cut(s) 33
BcnI CCSGG 2 cut(s) 296, 297
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 2 cut(s) 60, 147
BisI GCNGC 2 cut(s) 9, 197
BlsI GCNGC 2 cut(s) 10, 198
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 296, 297
Bme18I GGWCC 3 cut(s) 171, 176, 338
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 3 cut(s) 171, 176, 338
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 296, 297
BpiI GAAGAC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 33
BpuMI CCSGG 2 cut(s) 296, 297
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 132, 153
Bse3DI GCAATG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 77
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 132, 153
BshFI GGCC 1 cut(s) 48
BshTI ACCGGT 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 174, 278, 296
BsnI GGCC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 295
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 2 cut(s) 132, 153
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 302
BstEII GGTNACC 1 cut(s) 290
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 294, 295
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 171, 176, 338
Cfr9I CCCGGG 1 cut(s) 295
CpoI CGGWCCG 1 cut(s) 176
Csp6I GTAC 2 cut(s) 135, 150
CspAI ACCGGT 1 cut(s) 173
CspI CGGWCCG 1 cut(s) 176
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 8, 48, 59, 304
CviKI_1 RGCY 4 cut(s) 8, 48, 59, 304
CviQI GTAC 2 cut(s) 135, 150
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco47I GGWCC 3 cut(s) 171, 176, 338
Eco88I CYCGRG 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 290
EcoO65I GGTNACC 1 cut(s) 290
FaeI CATG 1 cut(s) 266
FaiI YATR 3 cut(s) 264, 307, 333
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 9, 197
Fsp4HI GCNGC 2 cut(s) 9, 197
FspBI CTAG 2 cut(s) 60, 147
GluI GCNGC 2 cut(s) 9, 197
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 1 cut(s) 48
HapII CCGG 3 cut(s) 174, 278, 296
Hin1II CATG 1 cut(s) 266
HpaII CCGG 3 cut(s) 174, 278, 296
HphI GGTGA 2 cut(s) 251, 302
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 11, 252
HpyCH4III ACNGT 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 282
LpnPI CCDG 5 cut(s) 145, 166, 187, 291, 309
MaeI CTAG 2 cut(s) 60, 147
MaeIII GTNAC 2 cut(s) 155, 290
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 3 cut(s) 73, 266, 341
MluCI AATT 1 cut(s) 115
MnlI CCTC 3 cut(s) 180, 195, 357
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 3 cut(s) 174, 278, 296
MspR9I CCNGG 2 cut(s) 296, 297
MwoI GCNNNNNNNGC 1 cut(s) 45
NciI CCSGG 2 cut(s) 296, 297
NdeII GATC 1 cut(s) 282
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 155, 290
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 2 cut(s) 10, 198
PspEI GGTNACC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 3 cut(s) 171, 176, 338
RsaI GTAC 2 cut(s) 136, 151
RsaNI GTAC 2 cut(s) 135, 150
RseI CAYNNNNRTG 1 cut(s) 162
Rsr2I CGGWCCG 1 cut(s) 176
RsrII CGGWCCG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 9, 197
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 3 cut(s) 171, 176, 338
ScaI AGTACT 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 296, 297
SetI ASST 7 cut(s) 10, 22, 61, 191, 228, 244, 306
SinI GGWCC 3 cut(s) 171, 176, 338
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 197
SspI AATATT 1 cut(s) 99
SspMI CTAG 2 cut(s) 60, 147
StyD4I CCNGG 2 cut(s) 294, 295
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 245
TasI AATT 1 cut(s) 115
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 2 cut(s) 155, 290
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 2 cut(s) 155, 290
TspDTI ATGAA 3 cut(s) 67, 257, 320
TspGWI ACGGA 1 cut(s) 324
TspMI CCCGGG 1 cut(s) 295
VpaK11BI GGWCC 3 cut(s) 171, 176, 338
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 2 cut(s) 60, 147
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.