Protein NRT1 PTR FAMILY
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68570 AT1G68570 |
| fragaria_vesca | FvH4_4g27560 FvH4_4g27560 FvH4_4g27560 FvH4_4g27560 |
| malus_domestica | MD13G1043100.v1.1 MD13G1043200.v1.1 MD16G1044000.v1.1 |
| prunus_persica | Prupe.1G309300_v2.0.a1 Prupe.1G309300_v2.0.a1 Prupe.1G309300_v2.0.a1 |
| pyrus_communis | pycom13g03790 pycom13g03800 pycom16g03820 |
| rosa_chinensis | RchiOBHm_Chr4g0435411 |
| rosa_laevigata | RLG00000006596 |
| rosa_multiflora | Rmu_co8226723.1_g000001 Rmu_sc0001940.1_g000022 |
| rosa_roxburghii | Rroxscaffold_5G00376650 |
| rosa_rugosa | Rorug04G0284700 |
| rosa_samantha | Rh4AG340400 Rh4BG348800 Rh4CG363300 Rh4DG343000 |
| rosa_wichuraiana | Rw4G029690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 669 |
| AccB1I | GGYRCC | 5 cut(s) | 224, 669, 1056, 1398, 1423 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 513, 1210 |
| AccI | GTMKAC | 1 cut(s) | 1658 |
| AccII | CGCG | 2 cut(s) | 936, 1454 |
| AccIII | TCCGGA | 1 cut(s) | 1703 |
| AciI | CCGC | 5 cut(s) | 253, 698, 731, 1144, 1452 |
| AclI | AACGTT | 1 cut(s) | 189 |
| AclWI | GGATC | 7 cut(s) | 686, 699, 767, 926, 988, 1536, 1549 |
| AcoI | YGGCCR | 3 cut(s) | 250, 358, 1476 |
| AcsI | RAATTY | 2 cut(s) | 621, 854 |
| AcuI | CTGAAG | 1 cut(s) | 1398 |
| AcyI | GRCGYC | 2 cut(s) | 225, 1424 |
| AfaI | GTAC | 5 cut(s) | 324, 533, 671, 1139, 1589 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 221, 384, 513, 688, 977, 1053, 1210, 1368 |
| AgsI | TTSAA | 4 cut(s) | 526, 590, 1076, 1570 |
| AjiI | CACGTC | 1 cut(s) | 513 |
| AleI | CACNNNNGTG | 1 cut(s) | 1109 |
| AluBI | AGCT | 8 cut(s) | 132, 148, 207, 391, 757, 832, 1286, 1723 |
| AluI | AGCT | 8 cut(s) | 132, 148, 207, 391, 757, 832, 1286, 1723 |
| Alw21I | GWGCWC | 3 cut(s) | 427, 1496, 1518 |
| Alw26I | GTCTC | 2 cut(s) | 331, 412 |
| Alw44I | GTGCAC | 1 cut(s) | 1514 |
| AlwI | GGATC | 7 cut(s) | 686, 699, 767, 926, 988, 1536, 1549 |
| Ama87I | CYCGRG | 2 cut(s) | 428, 1403 |
| Aor13HI | TCCGGA | 1 cut(s) | 1703 |
| AoxI | GGCC | 4 cut(s) | 250, 358, 1476, 1531 |
| ApaLI | GTGCAC | 1 cut(s) | 1514 |
| ApoI | RAATTY | 2 cut(s) | 621, 854 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 521 |
| Asp718I | GGTACC | 1 cut(s) | 669 |
| AspLEI | GCGC | 3 cut(s) | 227, 1426, 1456 |
| AspS9I | GGNCC | 4 cut(s) | 809, 968, 1464, 1532 |
| AsuC2I | CCSGG | 3 cut(s) | 715, 1177, 1187 |
| AsuHPI | GGTGA | 4 cut(s) | 175, 1096, 1114, 1165 |
| AsuNHI | GCTAGC | 1 cut(s) | 391 |
| AvaI | CYCGRG | 2 cut(s) | 428, 1403 |
| AvaII | GGWCC | 3 cut(s) | 809, 968, 1464 |
| BaeGI | GKGCMC | 2 cut(s) | 1401, 1518 |
| BamHI | GGATCC | 2 cut(s) | 691, 1541 |
| BanI | GGYRCC | 5 cut(s) | 224, 669, 1056, 1398, 1423 |
| BbsI | GAAGAC | 1 cut(s) | 1093 |
| Bbv12I | GWGCWC | 3 cut(s) | 427, 1496, 1518 |
| BccI | CCATC | 5 cut(s) | 538, 597, 681, 1366, 1478 |
| BceAI | ACGGC | 1 cut(s) | 373 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 414, 448 |
| BclI | TGATCA | 1 cut(s) | 1417 |
| BcnI | CCSGG | 3 cut(s) | 715, 1177, 1187 |
| BcoDI | GTCTC | 2 cut(s) | 331, 412 |
| BfaI | CTAG | 5 cut(s) | 392, 419, 777, 1164, 1181 |
| BfmI | CTRYAG | 2 cut(s) | 630, 1083 |
| BfoI | RGCGCY | 2 cut(s) | 228, 1427 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1733 |
| BmcAI | AGTACT | 2 cut(s) | 324, 1589 |
| Bme1390I | CCNGG | 3 cut(s) | 715, 1177, 1187 |
| Bme18I | GGWCC | 3 cut(s) | 809, 968, 1464 |
| BmeT110I | CYCGRG | 2 cut(s) | 428, 1403 |
| BmgBI | CACGTC | 1 cut(s) | 513 |
| BmgT120I | GGNCC | 4 cut(s) | 809, 968, 1464, 1532 |
| BmiI | GGNNCC | 9 cut(s) | 226, 671, 693, 969, 1058, 1090, 1400, 1425, 1543 |
| BmrFI | CCNGG | 3 cut(s) | 715, 1177, 1187 |
| BmsI | GCATC | 3 cut(s) | 229, 560, 1155 |
| BmtI | GCTAGC | 1 cut(s) | 395 |
| BpiI | GAAGAC | 1 cut(s) | 1093 |
| BpuMI | CCSGG | 3 cut(s) | 715, 1177, 1187 |
| BsaAI | YACGTR | 1 cut(s) | 1489 |
| BsaHI | GRCGYC | 2 cut(s) | 225, 1424 |
| BsaI | GGTCTC | 1 cut(s) | 331 |
| BsaJI | CCNNGG | 3 cut(s) | 355, 1047, 1186 |
| BsaWI | WCCGGW | 1 cut(s) | 1703 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 39, 69 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 221, 384, 513, 688, 977, 1053, 1210, 1368 |
| Bse118I | RCCGGY | 1 cut(s) | 681 |
| Bse1I | ACTGG | 4 cut(s) | 533, 1515, 1553, 1601 |
| Bse3DI | GCAATG | 1 cut(s) | 231 |
| BseAI | TCCGGA | 1 cut(s) | 1703 |
| BseDI | CCNNGG | 3 cut(s) | 355, 1047, 1186 |
| BseGI | GGATG | 3 cut(s) | 608, 1309, 1377 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 221, 384, 513, 688, 977, 1053, 1210, 1368 |
| BseMI | GCAATG | 1 cut(s) | 231 |
| BseMII | CTCAG | 4 cut(s) | 326, 660, 1367, 1689 |
| BseNI | ACTGG | 4 cut(s) | 533, 1515, 1553, 1601 |
| BseRI | GAGGAG | 3 cut(s) | 29, 899, 983 |
| BseSI | GKGCMC | 2 cut(s) | 1401, 1518 |
| BseX3I | CGGCCG | 1 cut(s) | 1476 |
| BseYI | CCCAGC | 1 cut(s) | 1011 |
| Bsh1236I | CGCG | 2 cut(s) | 936, 1454 |
| Bsh1285I | CGRYCG | 4 cut(s) | 876, 1131, 1144, 1479 |
| BshFI | GGCC | 4 cut(s) | 252, 360, 1478, 1533 |
| BshNI | GGYRCC | 5 cut(s) | 224, 669, 1056, 1398, 1423 |
| BsiEI | CGRYCG | 4 cut(s) | 876, 1131, 1144, 1479 |
| BsiHKAI | GWGCWC | 3 cut(s) | 427, 1496, 1518 |
| BsiHKCI | CYCGRG | 2 cut(s) | 428, 1403 |
| BslFI | GGGAC | 2 cut(s) | 627, 981 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 221, 384, 513, 688, 977, 1053, 1210, 1368 |
| BsmAI | GTCTC | 2 cut(s) | 331, 412 |
| BsmFI | GGGAC | 2 cut(s) | 627, 981 |
| BsmI | GAATGC | 1 cut(s) | 1382 |
| BsnI | GGCC | 4 cut(s) | 252, 360, 1478, 1533 |
| Bso31I | GGTCTC | 1 cut(s) | 331 |
| BsoBI | CYCGRG | 2 cut(s) | 428, 1403 |
| Bsp1286I | GDGCHC | 4 cut(s) | 427, 1401, 1496, 1518 |
| Bsp13I | TCCGGA | 1 cut(s) | 1703 |
| Bsp19I | CCATGG | 1 cut(s) | 1047 |
| BspACI | CCGC | 5 cut(s) | 253, 698, 731, 1144, 1452 |
| BspANI | GGCC | 4 cut(s) | 252, 360, 1478, 1533 |
| BspCNI | CTCAG | 4 cut(s) | 327, 659, 1366, 1690 |
| BspEI | TCCGGA | 1 cut(s) | 1703 |
| BspFNI | CGCG | 2 cut(s) | 936, 1454 |
| BspHI | TCATGA | 1 cut(s) | 1315 |
| BspLI | GGNNCC | 9 cut(s) | 226, 671, 693, 969, 1058, 1090, 1400, 1425, 1543 |
| BspMAI | CTGCAG | 1 cut(s) | 1087 |
| BspOI | GCTAGC | 1 cut(s) | 395 |
| BspPI | GGATC | 7 cut(s) | 686, 699, 767, 926, 988, 1536, 1549 |
| BspT107I | GGYRCC | 5 cut(s) | 224, 669, 1056, 1398, 1423 |
| BspTNI | GGTCTC | 1 cut(s) | 331 |
| BsrDI | GCAATG | 1 cut(s) | 231 |
| BsrFI | RCCGGY | 1 cut(s) | 681 |
| BsrI | ACTGG | 4 cut(s) | 533, 1515, 1553, 1601 |
| BssAI | RCCGGY | 1 cut(s) | 681 |
| BssECI | CCNNGG | 3 cut(s) | 355, 1047, 1186 |
| BssNAI | GTATAC | 1 cut(s) | 1659 |
| BssNI | GRCGYC | 2 cut(s) | 225, 1424 |
| BssT1I | CCWWGG | 1 cut(s) | 1047 |
| Bst1107I | GTATAC | 1 cut(s) | 1659 |
| Bst4CI | ACNGT | 6 cut(s) | 271, 313, 574, 631, 809, 928 |
| Bst6I | CTCTTC | 1 cut(s) | 743 |
| BstACI | GRCGYC | 2 cut(s) | 225, 1424 |
| BstBAI | YACGTR | 1 cut(s) | 1489 |
| BstC8I | GCNNGC | 5 cut(s) | 205, 393, 1087, 1531, 1725 |
| BstDEI | CTNAG | 5 cut(s) | 335, 646, 843, 1353, 1698 |
| BstDSI | CCRYGG | 2 cut(s) | 355, 1047 |
| BstF5I | GGATG | 3 cut(s) | 608, 1309, 1377 |
| BstFNI | CGCG | 2 cut(s) | 936, 1454 |
| BstH2I | RGCGCY | 2 cut(s) | 228, 1427 |
| BstHHI | GCGC | 3 cut(s) | 227, 1426, 1456 |
| BstMAI | GTCTC | 2 cut(s) | 331, 412 |
| BstMCI | CGRYCG | 4 cut(s) | 876, 1131, 1144, 1479 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 154, 204, 233, 357, 366, 548, 737, 1289, 1733 |
| BstSCI | CCNGG | 3 cut(s) | 713, 1175, 1185 |
| BstSFI | CTRYAG | 2 cut(s) | 630, 1083 |
| BstSLI | GKGCMC | 2 cut(s) | 1401, 1518 |
| BstUI | CGCG | 2 cut(s) | 936, 1454 |
| BstV2I | GAAGAC | 1 cut(s) | 1093 |
| BstX2I | RGATCY | 2 cut(s) | 691, 1541 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 912, 1048 |
| BstYI | RGATCY | 2 cut(s) | 691, 1541 |
| BstZ17I | GTATAC | 1 cut(s) | 1659 |
| BstZI | CGGCCG | 1 cut(s) | 1476 |
| BsuRI | GGCC | 4 cut(s) | 252, 360, 1478, 1533 |
| BtgI | CCRYGG | 2 cut(s) | 355, 1047 |
| BtgZI | GCGATG | 3 cut(s) | 126, 557, 917 |
| BtrI | CACGTC | 1 cut(s) | 513 |
| BtsCI | GGATG | 3 cut(s) | 608, 1309, 1377 |
| BtsI | GCAGTG | 2 cut(s) | 198, 1443 |
| BtsIMutI | CAGTG | 5 cut(s) | 198, 267, 1341, 1443, 1508 |
| Cac8I | GCNNGC | 5 cut(s) | 205, 393, 1087, 1531, 1725 |
| CciI | TCATGA | 1 cut(s) | 1315 |
| CfoI | GCGC | 3 cut(s) | 227, 1426, 1456 |
| Cfr10I | RCCGGY | 1 cut(s) | 681 |
| Cfr13I | GGNCC | 4 cut(s) | 809, 968, 1464, 1532 |
| CseI | GACGC | 1 cut(s) | 925 |
| Csp6I | GTAC | 5 cut(s) | 323, 532, 670, 1138, 1588 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 175, 210 |
| CviAII | CATG | 9 cut(s) | 29, 348, 637, 1048, 1093, 1117, 1316, 1367, 1387 |
| CviQI | GTAC | 5 cut(s) | 323, 532, 670, 1138, 1588 |
| DdeI | CTNAG | 5 cut(s) | 335, 646, 843, 1353, 1698 |
| DinI | GGCGCC | 2 cut(s) | 226, 1425 |
| EaeI | YGGCCR | 3 cut(s) | 250, 358, 1476 |
| EagI | CGGCCG | 1 cut(s) | 1476 |
| Eam1104I | CTCTTC | 1 cut(s) | 743 |
| EarI | CTCTTC | 1 cut(s) | 743 |
| EclXI | CGGCCG | 1 cut(s) | 1476 |
| Eco130I | CCWWGG | 1 cut(s) | 1047 |
| Eco31I | GGTCTC | 1 cut(s) | 331 |
| Eco47I | GGWCC | 3 cut(s) | 809, 968, 1464 |
| Eco52I | CGGCCG | 1 cut(s) | 1476 |
| Eco57I | CTGAAG | 1 cut(s) | 1398 |
| Eco88I | CYCGRG | 2 cut(s) | 428, 1403 |
| EcoO109I | RGGNCCY | 1 cut(s) | 968 |
| EcoRI | GAATTC | 1 cut(s) | 621 |
| EcoT14I | CCWWGG | 1 cut(s) | 1047 |
| EgeI | GGCGCC | 2 cut(s) | 226, 1425 |
| EheI | GGCGCC | 2 cut(s) | 226, 1425 |
| ErhI | CCWWGG | 1 cut(s) | 1047 |
| FaeI | CATG | 9 cut(s) | 32, 351, 640, 1051, 1096, 1120, 1319, 1370, 1390 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 35, 67, 1707, 1739 |
| FaqI | GGGAC | 2 cut(s) | 627, 981 |
| FatI | CATG | 9 cut(s) | 28, 347, 636, 1047, 1092, 1116, 1315, 1366, 1386 |
| FauI | CCCGC | 1 cut(s) | 691 |
| FauNDI | CATATG | 2 cut(s) | 153, 849 |
| FbaI | TGATCA | 1 cut(s) | 1417 |
| FblI | GTMKAC | 1 cut(s) | 1658 |
| FokI | GGATG | 3 cut(s) | 615, 1296, 1384 |
| FspBI | CTAG | 5 cut(s) | 392, 419, 777, 1164, 1181 |
| GlaI | GCGC | 3 cut(s) | 226, 1425, 1455 |
| GsaI | CCCAGC | 1 cut(s) | 1015 |
| HaeII | RGCGCY | 2 cut(s) | 228, 1427 |
| HaeIII | GGCC | 4 cut(s) | 252, 360, 1478, 1533 |
| HgaI | GACGC | 1 cut(s) | 925 |
| HhaI | GCGC | 3 cut(s) | 227, 1426, 1456 |
| Hin1I | GRCGYC | 2 cut(s) | 225, 1424 |
| Hin1II | CATG | 9 cut(s) | 32, 351, 640, 1051, 1096, 1120, 1319, 1370, 1390 |
| Hin6I | GCGC | 3 cut(s) | 225, 1424, 1454 |
| HinP1I | GCGC | 3 cut(s) | 225, 1424, 1454 |
| HindIII | AAGCTT | 2 cut(s) | 205, 830 |
| HinfI | GANTC | 5 cut(s) | 111, 441, 703, 1672, 1700 |
| HphI | GGTGA | 4 cut(s) | 175, 1096, 1114, 1165 |
| Hpy166II | GTNNAC | 4 cut(s) | 711, 1173, 1516, 1659 |
| Hpy188I | TCNGA | 4 cut(s) | 446, 772, 792, 962 |
| Hpy188III | TCNNGA | 6 cut(s) | 259, 590, 860, 984, 1316, 1704 |
| Hpy8I | GTNNAC | 4 cut(s) | 711, 1173, 1516, 1659 |
| Hpy99I | CGWCG | 4 cut(s) | 383, 485, 809, 941 |
| HpyAV | CCTTC | 3 cut(s) | 238, 1373, 1685 |
| HpyCH4III | ACNGT | 6 cut(s) | 271, 313, 574, 631, 809, 928 |
| HpyCH4IV | ACGT | 6 cut(s) | 189, 246, 512, 1488, 1607, 1661 |
| HpyCH4V | TGCA | 6 cut(s) | 35, 119, 203, 351, 1085, 1516 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 154, 204, 233, 357, 366, 548, 737, 1289, 1733 |
| HpyF3I | CTNAG | 5 cut(s) | 335, 646, 843, 1353, 1698 |
| HpySE526I | ACGT | 6 cut(s) | 189, 246, 512, 1488, 1607, 1661 |
| Hsp92I | GRCGYC | 2 cut(s) | 225, 1424 |
| Hsp92II | CATG | 9 cut(s) | 32, 351, 640, 1051, 1096, 1120, 1319, 1370, 1390 |
| HspAI | GCGC | 3 cut(s) | 225, 1424, 1454 |
| KasI | GGCGCC | 2 cut(s) | 224, 1423 |
| Kpn2I | TCCGGA | 1 cut(s) | 1703 |
| KpnI | GGTACC | 1 cut(s) | 673 |
| Ksp22I | TGATCA | 1 cut(s) | 1417 |
| LmnI | GCTCC | 3 cut(s) | 422, 1094, 1720 |
| LweI | GCATC | 3 cut(s) | 229, 560, 1155 |
| MaeI | CTAG | 5 cut(s) | 392, 419, 777, 1164, 1181 |
| MaeII | ACGT | 6 cut(s) | 189, 246, 512, 1488, 1607, 1661 |
| MaeIII | GTNAC | 6 cut(s) | 55, 568, 877, 1111, 1506, 1608 |
| MboII | GAAGA | 5 cut(s) | 383, 760, 827, 1093, 1141 |
| MflI | RGATCY | 2 cut(s) | 691, 1541 |
| MhlI | GDGCHC | 4 cut(s) | 427, 1401, 1496, 1518 |
| MluCI | AATT | 4 cut(s) | 396, 621, 854, 1564 |
| Mly113I | GGCGCC | 2 cut(s) | 225, 1424 |
| MlyI | GAGTC | 2 cut(s) | 712, 1709 |
| MmeI | TCCRAC | 4 cut(s) | 469, 650, 1563, 1569 |
| MroI | TCCGGA | 1 cut(s) | 1703 |
| MroXI | GAANNNNTTC | 1 cut(s) | 521 |
| MseI | TTAA | 7 cut(s) | 161, 308, 1155, 1601, 1623, 1665, 1738 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1109, 1157, 1314, 1334 |
| MspR9I | CCNGG | 3 cut(s) | 715, 1177, 1187 |
| Mva1269I | GAATGC | 1 cut(s) | 1382 |
| MvnI | CGCG | 2 cut(s) | 936, 1454 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 154, 204, 233, 357, 366, 548, 737, 1289, 1733 |
| NarI | GGCGCC | 2 cut(s) | 225, 1424 |
| NciI | CCSGG | 3 cut(s) | 715, 1177, 1187 |
| NcoI | CCATGG | 1 cut(s) | 1047 |
| NdeI | CATATG | 2 cut(s) | 153, 849 |
| NheI | GCTAGC | 1 cut(s) | 391 |
| NlaIII | CATG | 9 cut(s) | 32, 351, 640, 1051, 1096, 1120, 1319, 1370, 1390 |
| NlaIV | GGNNCC | 9 cut(s) | 226, 671, 693, 969, 1058, 1090, 1400, 1425, 1543 |
| NmeAIII | GCCGAG | 1 cut(s) | 1454 |
| NmuCI | GTSAC | 4 cut(s) | 55, 568, 1111, 1506 |
| OliI | CACNNNNGTG | 1 cut(s) | 1109 |
| PaeR7I | CTCGAG | 1 cut(s) | 1403 |
| PagI | TCATGA | 1 cut(s) | 1315 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 489, 1137, 1302, 1401, 1667 |
| PctI | GAATGC | 1 cut(s) | 1382 |
| PdmI | GAANNNNTTC | 1 cut(s) | 521 |
| PfeI | GAWTC | 3 cut(s) | 111, 441, 1672 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 513, 1210 |
| Ple19I | CGATCG | 2 cut(s) | 876, 1131 |
| PleI | GAGTC | 2 cut(s) | 711, 1708 |
| PluTI | GGCGCC | 2 cut(s) | 228, 1427 |
| PpsI | GAGTC | 2 cut(s) | 711, 1708 |
| Ppu21I | YACGTR | 1 cut(s) | 1489 |
| PpuMI | RGGWCCY | 1 cut(s) | 968 |
| Psp1406I | AACGTT | 1 cut(s) | 189 |
| Psp5II | RGGWCCY | 1 cut(s) | 968 |
| PspFI | CCCAGC | 1 cut(s) | 1011 |
| PspN4I | GGNNCC | 9 cut(s) | 226, 671, 693, 969, 1058, 1090, 1400, 1425, 1543 |
| PspPI | GGNCC | 4 cut(s) | 809, 968, 1464, 1532 |
| PspPPI | RGGWCCY | 1 cut(s) | 968 |
| PspXI | VCTCGAGB | 1 cut(s) | 1403 |
| PstI | CTGCAG | 1 cut(s) | 1087 |
| PsuI | RGATCY | 2 cut(s) | 691, 1541 |
| PvuI | CGATCG | 2 cut(s) | 876, 1131 |
| RsaI | GTAC | 5 cut(s) | 324, 533, 671, 1139, 1589 |
| RsaNI | GTAC | 5 cut(s) | 323, 532, 670, 1138, 1588 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1109, 1157, 1314, 1334 |
| SaqAI | TTAA | 7 cut(s) | 161, 308, 1155, 1601, 1623, 1665, 1738 |
| Sau96I | GGNCC | 4 cut(s) | 809, 968, 1464, 1532 |
| SbfI | CCTGCAGG | 1 cut(s) | 1087 |
| ScaI | AGTACT | 2 cut(s) | 324, 1589 |
| SchI | GAGTC | 2 cut(s) | 712, 1709 |
| ScrFI | CCNGG | 3 cut(s) | 715, 1177, 1187 |
| SdaI | CCTGCAGG | 1 cut(s) | 1087 |
| SduI | GDGCHC | 4 cut(s) | 427, 1401, 1496, 1518 |
| SfaNI | GCATC | 3 cut(s) | 229, 560, 1155 |
| SfcI | CTRYAG | 2 cut(s) | 630, 1083 |
| SfoI | GGCGCC | 2 cut(s) | 226, 1425 |
| Sfr274I | CTCGAG | 1 cut(s) | 1403 |
| SinI | GGWCC | 3 cut(s) | 809, 968, 1464 |
| SlaI | CTCGAG | 1 cut(s) | 1403 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1109, 1157, 1314, 1334 |
| SmlI | CTYRAG | 1 cut(s) | 1403 |
| SmoI | CTYRAG | 1 cut(s) | 1403 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1087 |
| Sse9I | AATT | 4 cut(s) | 396, 621, 854, 1564 |
| SsiI | CCGC | 5 cut(s) | 253, 698, 731, 1144, 1452 |
| SspDI | GGCGCC | 2 cut(s) | 224, 1423 |
| SspMI | CTAG | 5 cut(s) | 392, 419, 777, 1164, 1181 |
| StyD4I | CCNGG | 3 cut(s) | 713, 1175, 1185 |
| StyI | CCWWGG | 1 cut(s) | 1047 |
| TaaI | ACNGT | 6 cut(s) | 271, 313, 574, 631, 809, 928 |
| TaiI | ACGT | 6 cut(s) | 192, 249, 515, 1491, 1610, 1664 |
| TaqI | TCGA | 6 cut(s) | 480, 804, 939, 1263, 1305, 1404 |
| TasI | AATT | 4 cut(s) | 396, 621, 854, 1564 |
| TatI | WGTACW | 2 cut(s) | 322, 1587 |
| TauI | GCSGC | 2 cut(s) | 255, 1454 |
| TfiI | GAWTC | 3 cut(s) | 111, 441, 1672 |
| Tru1I | TTAA | 7 cut(s) | 161, 308, 1155, 1601, 1623, 1665, 1738 |
| Tru9I | TTAA | 7 cut(s) | 161, 308, 1155, 1601, 1623, 1665, 1738 |
| TscAI | CASTG | 5 cut(s) | 205, 274, 1341, 1450, 1515 |
| TseFI | GTSAC | 4 cut(s) | 55, 568, 1111, 1506 |
| Tsp45I | GTSAC | 4 cut(s) | 55, 568, 1111, 1506 |
| TspGWI | ACGGA | 2 cut(s) | 696, 896 |
| TspRI | CASTG | 5 cut(s) | 205, 274, 1341, 1450, 1515 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 513, 1210 |
| VneI | GTGCAC | 1 cut(s) | 1514 |
| VpaK11BI | GGWCC | 3 cut(s) | 809, 968, 1464 |
| XapI | RAATTY | 2 cut(s) | 621, 854 |
| XhoI | CTCGAG | 1 cut(s) | 1403 |
| XmiI | GTMKAC | 1 cut(s) | 1658 |
| XmnI | GAANNNNTTC | 1 cut(s) | 521 |
| XspI | CTAG | 5 cut(s) | 392, 419, 777, 1164, 1181 |
| ZrmI | AGTACT | 2 cut(s) | 324, 1589 |