Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8226723.1

Orthogroup ID

OG0006846

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 531

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8226723.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgggaatcggattcgtcatttccatactggctactttcgtcgctggattcgtggaattgaagcgaaaaaaggcagcattggcttatgggcttctgaatcagccacacaccatgatccccatttcagtattttggctagcgccccagtacagccttcatgggatagctgaagcattcatgtcaatcgggcacctagagtttttctacagccaggcgccagagagcatgaggagcactgctgctgcactgttctggactgcgatatcggccgggaattatttgagcaccctcttggtttcattggtgcacaagtttagtgctgggactaatggatccaactggctaccggatgataatttgaaccaggggaagctggaaaacttttactggttgatcaccttgctacaagttgctaatctgatttactacctttggtgcgctaaaatatatacgtataagccgattcaggtgaaagggaaagatggagctgagtctgaaggaaagggtgtggagctttctattcgggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0008150 GO:0010336 GO:0016020 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

176

Amino Acids

19.52

Weight (kDa)

8.61

Isoelectric Point (pI)

23.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68570 AT1G68570
fragaria_vesca	FvH4_4g27560 FvH4_4g27560 FvH4_4g27560 FvH4_4g27560
malus_domestica	MD13G1043100.v1.1 MD13G1043200.v1.1 MD16G1044000.v1.1
prunus_persica	Prupe.1G309300_v2.0.a1 Prupe.1G309300_v2.0.a1 Prupe.1G309300_v2.0.a1
pyrus_communis	pycom13g03790 pycom13g03800 pycom16g03820
rosa_chinensis	RchiOBHm_Chr4g0435411
rosa_laevigata	RLG00000006596
rosa_multiflora	Rmu_co8226723.1_g000001 Rmu_sc0001940.1_g000022
rosa_roxburghii	Rroxscaffold_5G00376650
rosa_rugosa	Rorug04G0284700
rosa_samantha	Rh4AG340400 Rh4BG348800 Rh4CG363300 Rh4DG343000
rosa_wichuraiana	Rw4G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	189, 214
AclWI	GGATC	3 cut(s)	109, 327, 340
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	2 cut(s)	189, 516
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	61, 361
AjnI	CCWGG	2 cut(s)	210, 363
AluBI	AGCT	4 cut(s)	167, 373, 488, 514
AluI	AGCT	4 cut(s)	167, 373, 488, 514
Alw21I	GWGCWC	3 cut(s)	236, 287, 309
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	3 cut(s)	109, 327, 340
AoxI	GGCC	1 cut(s)	267
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	3 cut(s)	74, 239, 242
AspLEI	GCGC	3 cut(s)	142, 217, 440
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	388, 481
AsuNHI	GCTAGC	1 cut(s)	136
BaeGI	GKGCMC	2 cut(s)	192, 309
BamHI	GGATCC	1 cut(s)	332
BanI	GGYRCC	2 cut(s)	189, 214
Bbv12I	GWGCWC	3 cut(s)	236, 287, 309
BbvI	GCAGC	3 cut(s)	86, 226, 229
BccI	CCATC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	212, 365
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	2 cut(s)	137, 194
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	2 cut(s)	143, 218
BisI	GCNGC	3 cut(s)	75, 240, 243
BlsI	GCNGC	3 cut(s)	76, 241, 244
Bme1390I	CCNGG	3 cut(s)	212, 271, 365
BmiI	GGNNCC	3 cut(s)	191, 216, 334
BmrFI	CCNGG	3 cut(s)	212, 271, 365
BmrI	ACTGGG	1 cut(s)	139
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	346
Bse1I	ACTGG	4 cut(s)	33, 145, 344, 392
BseBI	CCWGG	2 cut(s)	212, 365
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	4 cut(s)	33, 145, 344, 392
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	2 cut(s)	192, 309
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	86, 226, 229
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	2 cut(s)	189, 214
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	3 cut(s)	236, 287, 309
BsiSI	CCGG	2 cut(s)	270, 347
BslFI	GGGAC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	4 cut(s)	192, 236, 287, 309
Bsp143I	GATC	3 cut(s)	114, 332, 393
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	191, 216, 334
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	3 cut(s)	109, 327, 340
BspT107I	GGYRCC	2 cut(s)	189, 214
BsrI	ACTGG	4 cut(s)	33, 145, 344, 392
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	3 cut(s)	114, 332, 393
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	212, 365
Bst4CI	ACNGT	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	355
BstH2I	RGCGCY	2 cut(s)	143, 218
BstHHI	GCGC	3 cut(s)	142, 217, 440
BstKTI	GATC	3 cut(s)	117, 335, 396
BstMBI	GATC	3 cut(s)	114, 332, 393
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 231, 266
BstNI	CCWGG	2 cut(s)	212, 365
BstSCI	CCNGG	3 cut(s)	210, 269, 363
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	2 cut(s)	192, 309
BstSNI	TACGTA	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	86, 226, 229
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	234, 245
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	3 cut(s)	142, 217, 440
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	112, 158, 178, 226
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	489
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	3 cut(s)	116, 334, 395
DpnII	GATC	3 cut(s)	114, 332, 393
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
EclXI	CGGCCG	1 cut(s)	267
Eco105I	TACGTA	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	267
Eco57I	CTGAAG	2 cut(s)	189, 516
EcoRII	CCWGG	2 cut(s)	210, 363
EcoRV	GATATC	1 cut(s)	264
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
FaeI	CATG	4 cut(s)	115, 161, 181, 229
FaiI	YATR	9 cut(s)	26, 87, 113, 159, 179, 227, 448, 450, 456
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	4 cut(s)	111, 157, 177, 225
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	75, 240, 243
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	75, 240, 243
FspBI	CTAG	2 cut(s)	137, 194
GlaI	GCGC	3 cut(s)	141, 216, 439
GluI	GCNGC	3 cut(s)	75, 240, 243
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	2 cut(s)	143, 218
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	270, 347
HhaI	GCGC	3 cut(s)	142, 217, 440
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	4 cut(s)	115, 161, 181, 229
Hin6I	GCGC	3 cut(s)	140, 215, 438
HinP1I	GCGC	3 cut(s)	140, 215, 438
HinfI	GANTC	6 cut(s)	6, 12, 48, 97, 463, 491
HpaII	CCGG	2 cut(s)	270, 347
HphI	GGTGA	2 cut(s)	388, 481
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	11, 96, 420, 496
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	164, 491
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	2 cut(s)	245, 307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 231, 266
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	452
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	4 cut(s)	115, 161, 181, 229
HspAI	GCGC	3 cut(s)	140, 215, 438
KasI	GGCGCC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	114, 332, 393
LmnI	GCTCC	3 cut(s)	231, 485, 511
Lsp1109I	GCAGC	3 cut(s)	86, 226, 229
MaeI	CTAG	2 cut(s)	137, 194
MaeII	ACGT	1 cut(s)	452
MalI	GATC	3 cut(s)	116, 334, 395
MboI	GATC	3 cut(s)	114, 332, 393
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	4 cut(s)	192, 236, 287, 309
MluCI	AATT	3 cut(s)	56, 274, 355
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	2 cut(s)	222, 299
MspI	CCGG	2 cut(s)	270, 347
MspR9I	CCNGG	3 cut(s)	212, 271, 365
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	212, 365
MwoI	GCNNNNNNNGC	3 cut(s)	80, 231, 266
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	3 cut(s)	114, 332, 393
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	115, 161, 181, 229
NlaIV	GGNNCC	3 cut(s)	191, 216, 334
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 458
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	5 cut(s)	6, 12, 48, 97, 463
PkrI	GCNGC	3 cut(s)	76, 241, 244
PleI	GAGTC	1 cut(s)	499
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	210, 363
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	2 cut(s)	210, 363
PspN4I	GGNNCC	3 cut(s)	191, 216, 334
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	3 cut(s)	75, 240, 243
Sau3AI	GATC	3 cut(s)	114, 332, 393
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	3 cut(s)	212, 271, 365
SduI	GDGCHC	4 cut(s)	192, 236, 287, 309
SetI	ASST	9 cut(s)	169, 195, 375, 401, 432, 455, 471, 490, 516
SfcI	CTRYAG	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	216
SnaBI	TACGTA	1 cut(s)	453
Sse9I	AATT	3 cut(s)	56, 274, 355
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	2 cut(s)	137, 194
StyD4I	CCNGG	3 cut(s)	210, 269, 363
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	1 cut(s)	455
TasI	AATT	3 cut(s)	56, 274, 355
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	5 cut(s)	6, 12, 48, 97, 463
TscAI	CASTG	2 cut(s)	241, 252
TseI	GCWGC	3 cut(s)	74, 239, 242
TspDTI	ATGAA	3 cut(s)	146, 166, 288
TspRI	CASTG	2 cut(s)	241, 252
VneI	GTGCAC	1 cut(s)	305
XspI	CTAG	2 cut(s)	137, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.