pycom13g03800

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
2532164 .. 2535464
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03800.4

Sequence Viewer

Length: 1320 bp
ATGGAACATTTTGAGGAGAAAGGCAGCCATGCTGCAAGGAAAAAGGGAGGCTTGGTCACTATGCCCTTCATCTTTGCTAATGAGATTTGTGAGAAGTTGGCTGTGGTGGGATTCGGTGCAAATATGATAAGCTACTTGACAACGCAGCTTCACATGCCCTTAACAAAAGCAGCCAACACCCTCACCAACGTTGCTGGGACTGCAAGCTTGACCCCCTTGGTTGGCGCCTTCATTGCTGATGCCTACGTTGGCCGCTTCTGGACTATCACTGTTGCTTCCGTTATATACCAGATTGGAATGATTTGCTTAACAGTATCAGCAGTACTTCCACAACTGAGACCTCCCCCTTGCAACCACGGCCAAGTGTGCGAAGAAGCCGACGGGGGGCAGCTAGCAATTATGTATGTCTCCCTCTTACTAGGAGCACTCGGGTCGGGCGGAATCCGACCCTGCGTGGTGTCATTCGGGGCAGATCAGTTCGACGAGAATGACGAAAAACAAACCACCAAGACGTGGAACTACTTCAACTGGTACTATTTTGCGATGGGGGCATCAATACTAGTGGCTGTCACGGTGCTTGTGTATATTCAAGACAACATTGGATGGGGTTTGGGACTTGGAATTCCAACTATAGCCATGTTTCTCTCAGTTATTGCGTTTTTGATCGGGTACCCGCTTTACCGGCACTTGGATCCGGCGGGGAGTCCGTTTACCCGGTTGATACAAGTGGCGGTGGCTGCCTACAAGAAGAGAAAGCTGTCTATGGTGTCTGATCCTAGAATGTTGTATCAGAATGATGAACTCGACGGTCCTATTTCGTTGGGTGGAAAGCTTCTTCACACTAAGCATATGAAATTTCTTGACAAGGCAGCGATCGTAACGGAGGAGGACAATCTCAAGGCACCAAACCTATGGAGGATCAACACCGTTCATCGCGTCGAAGAACTGAAATCCATAATCAGAATGGGACCTATATGGGGATCAGGAATACTCCTCATCACAGCCTATGCCCAGCAAAGCACATTCTCACTCCAACAAGCCAAAACCATGGACAGGCACCTCACAAAGTCCTTTGAAATCCCTGCAGGCTCCATGTCAGTCTTCACCATAGTAACCATGCTCACCACGATCGCCTTGTACGACCGCATCTTCATTAAGGTGGCTAGAAAGTTCACCGGGCTAGACCGGGGAATAACATTCCTCCACAGAATGGGAATAGGGTTTGTCATTTCGGTATTCGCCACATTGGTCGCCGGATTTGTCGAAGTGAAGCGAAAAAAGGCAGCTTTCGCACACGGGTTGGTCGATCGATCCTCATGA

Protein Analysis

440

Amino Acids

48.23

Weight (kDa)

9.19

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 669
AccB1I GGYRCC 4 cut(s) 224, 669, 901, 1056
AccB7I CCANNNNNTGG 2 cut(s) 513, 1210
AccII CGCG 1 cut(s) 936
AciI CCGC 6 cut(s) 253, 438, 674, 698, 731, 1144
AclI AACGTT 1 cut(s) 189
AclWI GGATC 6 cut(s) 686, 699, 767, 926, 988, 1305
AcoI YGGCCR 2 cut(s) 250, 358
AcsI RAATTY 2 cut(s) 621, 854
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 4 cut(s) 324, 533, 671, 1139
AfiI CCNNNNNNNGG 7 cut(s) 221, 384, 513, 688, 977, 1053, 1210
AgsI TTSAA 3 cut(s) 526, 590, 1076
AhlI ACTAGT 1 cut(s) 559
AjiI CACGTC 1 cut(s) 513
AluBI AGCT 7 cut(s) 132, 148, 207, 391, 757, 832, 1286
AluI AGCT 7 cut(s) 132, 148, 207, 391, 757, 832, 1286
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 331, 412
AlwI GGATC 6 cut(s) 686, 699, 767, 926, 988, 1305
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 2 cut(s) 250, 358
ApeKI GCWGC 8 cut(s) 24, 32, 145, 170, 388, 737, 869, 1283
ApoI RAATTY 2 cut(s) 621, 854
Asp700I GAANNNNTTC 1 cut(s) 521
Asp718I GGTACC 1 cut(s) 669
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 809, 968
AsuC2I CCSGG 3 cut(s) 715, 1177, 1187
AsuHPI GGTGA 4 cut(s) 175, 1096, 1114, 1165
AsuNHI GCTAGC 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 809, 968
BamHI GGATCC 1 cut(s) 691
BanI GGYRCC 4 cut(s) 224, 669, 901, 1056
BbsI GAAGAC 1 cut(s) 1093
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 8 cut(s) 19, 36, 157, 182, 400, 724, 881, 1295
BccI CCATC 2 cut(s) 538, 597
BceAI ACGGC 1 cut(s) 373
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BcnI CCSGG 3 cut(s) 715, 1177, 1187
BcoDI GTCTC 2 cut(s) 331, 412
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 6 cut(s) 392, 419, 560, 777, 1164, 1181
BfmI CTRYAG 2 cut(s) 630, 1083
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 9 cut(s) 25, 33, 146, 171, 253, 389, 738, 870, 1284
BlsI GCNGC 9 cut(s) 26, 34, 147, 172, 254, 390, 739, 871, 1285
BmcAI AGTACT 1 cut(s) 324
Bme1390I CCNGG 3 cut(s) 715, 1177, 1187
Bme18I GGWCC 2 cut(s) 809, 968
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 513
BmgT120I GGNCC 2 cut(s) 809, 968
BmiI GGNNCC 7 cut(s) 226, 671, 693, 903, 969, 1058, 1090
BmrFI CCNGG 3 cut(s) 715, 1177, 1187
BmsI GCATC 3 cut(s) 229, 560, 1155
BmtI GCTAGC 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 1093
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 3 cut(s) 715, 1177, 1187
Bsa29I ATCGAT 1 cut(s) 1309
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 4 cut(s) 216, 355, 1047, 1186
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 7 cut(s) 221, 384, 513, 688, 977, 1053, 1210
Bse118I RCCGGY 1 cut(s) 681
Bse1I ACTGG 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 1309
BseDI CCNNGG 4 cut(s) 216, 355, 1047, 1186
BseGI GGATG 1 cut(s) 608
BseLI CCNNNNNNNGG 7 cut(s) 221, 384, 513, 688, 977, 1053, 1210
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 326, 660
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 3 cut(s) 29, 899, 983
BseXI GCAGC 8 cut(s) 19, 36, 157, 182, 400, 724, 881, 1295
BseYI CCCAGC 2 cut(s) 194, 1011
Bsh1236I CGCG 1 cut(s) 936
Bsh1285I CGRYCG 4 cut(s) 876, 1131, 1144, 1309
BshFI GGCC 2 cut(s) 252, 360
BshNI GGYRCC 4 cut(s) 224, 669, 901, 1056
BshVI ATCGAT 1 cut(s) 1309
BsiEI CGRYCG 4 cut(s) 876, 1131, 1144, 1309
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 6 cut(s) 682, 695, 715, 1176, 1186, 1254
BslFI GGGAC 3 cut(s) 211, 627, 981
BslI CCNNNNNNNGG 7 cut(s) 221, 384, 513, 688, 977, 1053, 1210
BsmAI GTCTC 2 cut(s) 331, 412
BsmFI GGGAC 3 cut(s) 211, 627, 981
BsnI GGCC 2 cut(s) 252, 360
Bso31I GGTCTC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 427
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 6 cut(s) 253, 438, 674, 698, 731, 1144
BspANI GGCC 2 cut(s) 252, 360
BspCNI CTCAG 2 cut(s) 327, 659
BspDI ATCGAT 1 cut(s) 1309
BspFNI CGCG 1 cut(s) 936
BspHI TCATGA 1 cut(s) 1316
BspLI GGNNCC 7 cut(s) 226, 671, 693, 903, 969, 1058, 1090
BspMAI CTGCAG 1 cut(s) 1087
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 6 cut(s) 686, 699, 767, 926, 988, 1305
BspT107I GGYRCC 4 cut(s) 224, 669, 901, 1056
BspTNI GGTCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 681
BsrI ACTGG 1 cut(s) 533
BssAI RCCGGY 1 cut(s) 681
BssECI CCNNGG 4 cut(s) 216, 355, 1047, 1186
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 216, 1047
Bst4CI ACNGT 5 cut(s) 271, 313, 574, 809, 928
Bst6I CTCTTC 1 cut(s) 743
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 205, 393, 1087
BstDEI CTNAG 3 cut(s) 335, 646, 843
BstDSI CCRYGG 2 cut(s) 355, 1047
BstF5I GGATG 1 cut(s) 608
BstFNI CGCG 1 cut(s) 936
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstMAI GTCTC 2 cut(s) 331, 412
BstMCI CGRYCG 4 cut(s) 876, 1131, 1144, 1309
BstMWI GCNNNNNNNGC 9 cut(s) 154, 200, 233, 357, 366, 548, 682, 737, 1289
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 713, 1175, 1185
BstSFI CTRYAG 2 cut(s) 630, 1083
BstUI CGCG 1 cut(s) 936
BstV1I GCAGC 8 cut(s) 19, 36, 157, 182, 400, 724, 881, 1295
BstV2I GAAGAC 1 cut(s) 1093
BstX2I RGATCY 1 cut(s) 691
BstXI CCANNNNNNTGG 2 cut(s) 912, 1048
BstYI RGATCY 1 cut(s) 691
Bsu15I ATCGAT 1 cut(s) 1309
BsuRI GGCC 2 cut(s) 252, 360
BsuTUI ATCGAT 1 cut(s) 1309
BtgI CCRYGG 2 cut(s) 355, 1047
BtgZI GCGATG 2 cut(s) 557, 917
BtrI CACGTC 1 cut(s) 513
BtsCI GGATG 1 cut(s) 608
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 3 cut(s) 205, 393, 1087
CciI TCATGA 1 cut(s) 1316
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 681
Cfr13I GGNCC 2 cut(s) 809, 968
ClaI ATCGAT 1 cut(s) 1309
CseI GACGC 1 cut(s) 925
Csp6I GTAC 4 cut(s) 323, 532, 670, 1138
CspCI CAANNNNNGTGG 2 cut(s) 543, 578
CviAII CATG 7 cut(s) 29, 154, 637, 1048, 1093, 1117, 1317
CviQI GTAC 4 cut(s) 323, 532, 670, 1138
DdeI CTNAG 3 cut(s) 335, 646, 843
DinI GGCGCC 1 cut(s) 226
EaeI YGGCCR 2 cut(s) 250, 358
Eam1104I CTCTTC 1 cut(s) 743
EarI CTCTTC 1 cut(s) 743
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 2 cut(s) 216, 1047
Eco31I GGTCTC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 809, 968
Eco88I CYCGRG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 216, 1047
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 216, 1047
FaeI CATG 7 cut(s) 32, 157, 640, 1051, 1096, 1120, 1320
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 3 cut(s) 211, 627, 981
FatI CATG 7 cut(s) 28, 153, 636, 1047, 1092, 1116, 1316
FauI CCCGC 2 cut(s) 681, 691
FauNDI CATATG 1 cut(s) 849
Fnu4HI GCNGC 9 cut(s) 25, 33, 146, 171, 253, 389, 738, 870, 1284
FokI GGATG 1 cut(s) 615
Fsp4HI GCNGC 9 cut(s) 25, 33, 146, 171, 253, 389, 738, 870, 1284
FspBI CTAG 6 cut(s) 392, 419, 560, 777, 1164, 1181
GlaI GCGC 1 cut(s) 226
GluI GCNGC 9 cut(s) 25, 33, 146, 171, 253, 389, 738, 870, 1284
GsaI CCCAGC 2 cut(s) 198, 1015
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 252, 360
HapII CCGG 6 cut(s) 682, 695, 715, 1176, 1186, 1254
HgaI GACGC 1 cut(s) 925
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 7 cut(s) 32, 157, 640, 1051, 1096, 1120, 1320
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HindIII AAGCTT 2 cut(s) 205, 830
HinfI GANTC 3 cut(s) 111, 441, 703
HpaII CCGG 6 cut(s) 682, 695, 715, 1176, 1186, 1254
HphI GGTGA 4 cut(s) 175, 1096, 1114, 1165
Hpy166II GTNNAC 2 cut(s) 711, 1173
Hpy188I TCNGA 4 cut(s) 446, 772, 792, 962
Hpy188III TCNNGA 5 cut(s) 259, 590, 860, 984, 1317
Hpy8I GTNNAC 2 cut(s) 711, 1173
Hpy99I CGWCG 4 cut(s) 383, 485, 809, 941
HpyAV CCTTC 2 cut(s) 76, 238
HpyCH4III ACNGT 5 cut(s) 271, 313, 574, 809, 928
HpyCH4IV ACGT 3 cut(s) 189, 246, 512
HpyCH4V TGCA 5 cut(s) 35, 119, 203, 351, 1085
HpyF10VI GCNNNNNNNGC 9 cut(s) 154, 200, 233, 357, 366, 548, 682, 737, 1289
HpyF3I CTNAG 3 cut(s) 335, 646, 843
HpySE526I ACGT 3 cut(s) 189, 246, 512
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 7 cut(s) 32, 157, 640, 1051, 1096, 1120, 1320
HspAI GCGC 1 cut(s) 225
KasI GGCGCC 1 cut(s) 224
KpnI GGTACC 1 cut(s) 673
LmnI GCTCC 2 cut(s) 422, 1094
Lsp1109I GCAGC 8 cut(s) 19, 36, 157, 182, 400, 724, 881, 1295
LweI GCATC 3 cut(s) 229, 560, 1155
MaeI CTAG 6 cut(s) 392, 419, 560, 777, 1164, 1181
MaeII ACGT 3 cut(s) 189, 246, 512
MaeIII GTNAC 4 cut(s) 55, 568, 877, 1111
MboII GAAGA 6 cut(s) 383, 760, 827, 953, 1093, 1141
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 3 cut(s) 396, 621, 854
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 712
MmeI TCCRAC 3 cut(s) 469, 650, 1057
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 3 cut(s) 161, 308, 1155
MslI CAYNNNNRTG 1 cut(s) 1157
MspI CCGG 6 cut(s) 682, 695, 715, 1176, 1186, 1254
MspR9I CCNGG 3 cut(s) 715, 1177, 1187
MvnI CGCG 1 cut(s) 936
MwoI GCNNNNNNNGC 9 cut(s) 154, 200, 233, 357, 366, 548, 682, 737, 1289
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 3 cut(s) 715, 1177, 1187
NcoI CCATGG 1 cut(s) 1047
NdeI CATATG 1 cut(s) 849
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 7 cut(s) 32, 157, 640, 1051, 1096, 1120, 1320
NlaIV GGNNCC 7 cut(s) 226, 671, 693, 903, 969, 1058, 1090
NmuCI GTSAC 2 cut(s) 55, 568
NspI RCATGY 1 cut(s) 157
PagI TCATGA 1 cut(s) 1316
PcsI WCGNNNNNNNCGW 3 cut(s) 489, 1137, 1302
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 111, 441
PflMI CCANNNNNTGG 2 cut(s) 513, 1210
PkrI GCNGC 9 cut(s) 26, 34, 147, 172, 254, 390, 739, 871, 1285
Ple19I CGATCG 3 cut(s) 876, 1131, 1309
PleI GAGTC 1 cut(s) 711
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 711
PpuMI RGGWCCY 1 cut(s) 968
Psp1406I AACGTT 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 968
PspFI CCCAGC 2 cut(s) 194, 1011
PspN4I GGNNCC 7 cut(s) 226, 671, 693, 903, 969, 1058, 1090
PspPI GGNCC 2 cut(s) 809, 968
PspPPI RGGWCCY 1 cut(s) 968
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 691
PvuI CGATCG 3 cut(s) 876, 1131, 1309
RsaI GTAC 4 cut(s) 324, 533, 671, 1139
RsaNI GTAC 4 cut(s) 323, 532, 670, 1138
RseI CAYNNNNRTG 1 cut(s) 1157
SaqAI TTAA 3 cut(s) 161, 308, 1155
SatI GCNGC 9 cut(s) 25, 33, 146, 171, 253, 389, 738, 870, 1284
Sau96I GGNCC 2 cut(s) 809, 968
SbfI CCTGCAGG 1 cut(s) 1087
ScaI AGTACT 1 cut(s) 324
SchI GAGTC 1 cut(s) 712
ScrFI CCNGG 3 cut(s) 715, 1177, 1187
SdaI CCTGCAGG 1 cut(s) 1087
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 3 cut(s) 229, 560, 1155
SfcI CTRYAG 2 cut(s) 630, 1083
SfoI GGCGCC 1 cut(s) 226
SinI GGWCC 2 cut(s) 809, 968
SmiMI CAYNNNNRTG 1 cut(s) 1157
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
SpeI ACTAGT 1 cut(s) 559
Sse8387I CCTGCAGG 1 cut(s) 1087
Sse9I AATT 3 cut(s) 396, 621, 854
SsiI CCGC 6 cut(s) 253, 438, 674, 698, 731, 1144
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 6 cut(s) 392, 419, 560, 777, 1164, 1181
StyD4I CCNGG 3 cut(s) 713, 1175, 1185
StyI CCWWGG 2 cut(s) 216, 1047
TaaI ACNGT 5 cut(s) 271, 313, 574, 809, 928
TaiI ACGT 3 cut(s) 192, 249, 515
TaqI TCGA 6 cut(s) 480, 804, 939, 1263, 1305, 1309
TasI AATT 3 cut(s) 396, 621, 854
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 111, 441
Tru1I TTAA 3 cut(s) 161, 308, 1155
Tru9I TTAA 3 cut(s) 161, 308, 1155
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 55, 568
TseI GCWGC 8 cut(s) 24, 32, 145, 170, 388, 737, 869, 1283
Tsp45I GTSAC 2 cut(s) 55, 568
TspDTI ATGAA 6 cut(s) 58, 220, 813, 866, 920, 1141
TspGWI ACGGA 3 cut(s) 268, 696, 896
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 2 cut(s) 513, 1210
VpaK11BI GGWCC 2 cut(s) 809, 968
XapI RAATTY 2 cut(s) 621, 854
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 961
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 6 cut(s) 392, 419, 560, 777, 1164, 1181
ZrmI AGTACT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.