MD13G1049600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017291
Physical Location & Seq
Forward (+)
3515415 .. 3516082
668 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1049600.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGCATCAATGAAGGCGGAAAGGCAAGTCGGCACTCAGCTGTTTGGGCAGGCCAAGAAAGAACCTGCCGTTGCCAAGGCTGGTGATGCCAAAGCTCCGGCATCTAAAGCCACCCCAAAGAAGGCTGCAGCCGCACCAAAGTCTCCGGCACCCAAGAAGAAGGGTAAAGGTGGCAAATCTGCAGCAAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.37

Weight (kDa)

10.6

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017291)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28390 FvH4_4g28390
malus_domestica MD13G1049600.v1.1
prunus_persica Prupe.1G302100_v2.0.a1 Prupe.1G302300_v2.0.a1 Prupe.1G302300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0436321
rosa_roxburghii Rroxscaffold_5G00377500
rosa_samantha Rh4AG347200 Rh4BG356100 Rh4CG370700 Rh4DG349800
rosa_wichuraiana Rw4G030350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 2 cut(s) 17, 132
AfiI CCNNNNNNNGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 40, 95
AluI AGCT 2 cut(s) 40, 95
Alw26I GTCTC 1 cut(s) 147
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 125, 128, 182
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 112, 140
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 147
BfmI CTRYAG 2 cut(s) 126, 180
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 4 cut(s) 126, 129, 132, 183
BlsI GCNGC 4 cut(s) 127, 130, 133, 184
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 3 cut(s) 14, 76, 110
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 112, 140
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 98, 146
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 53
BspACI CCGC 2 cut(s) 17, 132
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 2 cut(s) 130, 184
BspMI ACCTGC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 46, 86, 107, 131
BstSFI CTRYAG 2 cut(s) 126, 180
BstV1I GCAGC 2 cut(s) 112, 140
BsuRI GGCC 1 cut(s) 53
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 51
CviJI RGCY 7 cut(s) 40, 53, 80, 95, 110, 125, 131
CviKI_1 RGCY 7 cut(s) 40, 53, 80, 95, 110, 125, 131
DdeI CTNAG 1 cut(s) 36
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 126, 129, 132, 183
Fsp4HI GCNGC 4 cut(s) 126, 129, 132, 183
GluI GCNGC 4 cut(s) 126, 129, 132, 183
HaeIII GGCC 1 cut(s) 53
HapII CCGG 2 cut(s) 98, 146
HpaII CCGG 2 cut(s) 98, 146
HphI GGTGA 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 7, 115, 154
HpyCH4V TGCA 2 cut(s) 128, 182
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 86, 107, 131
HpyF3I CTNAG 1 cut(s) 36
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 35, 66, 78, 111, 159
Lsp1109I GCAGC 2 cut(s) 112, 140
LweI GCATC 3 cut(s) 14, 76, 110
MboII GAAGA 1 cut(s) 169
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 98, 146
MwoI GCNNNNNNNGC 4 cut(s) 46, 86, 107, 131
NlaIV GGNNCC 1 cut(s) 150
PkrI GCNGC 4 cut(s) 127, 130, 133, 184
PspN4I GGNNCC 1 cut(s) 150
PstI CTGCAG 2 cut(s) 130, 184
PvuII CAGCTG 1 cut(s) 40
SatI GCNGC 4 cut(s) 126, 129, 132, 183
SetI ASST 4 cut(s) 42, 67, 97, 172
SfaNI GCATC 3 cut(s) 14, 76, 110
SfcI CTRYAG 2 cut(s) 126, 180
SgeI CNNG 9 cut(s) 38, 62, 67, 77, 88, 93, 110, 158, 166
SsiI CCGC 2 cut(s) 17, 132
StyI CCWWGG 1 cut(s) 75
TauI GCSGC 1 cut(s) 134
TseI GCWGC 3 cut(s) 125, 128, 182
TspDTI ATGAA 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.