Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017291

Physical Location & Seq

Genomic Coordinates Forward (+)

51604715 .. 51614343

Gene Structure 9629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG356100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGGAGGCGCTGATCGAGGCGTGGGGGGAGAGATACTTGGAGCTGAGCAGAGGGAACCTGAAGCAGGAGCACTGGAAGGAAGTGGCTGACATCAGTTTCCAAGTTTCTAAAAGTATGGCATCAATGAAGGCCGAGAGAGGAGTTGGGACTCAACTGTTTGGGCAGGCCAAGAAAGAACCTGCCGTCGCCAAGGCCGGCGATGGTGCAGCCAAAACTTCAGCATCTAAAGCAGGACCAAAGAAGGCTGCAGCCAAGCCGGCTCCTGCACCCAAGAAGAAGGTACAGCGAGTACAACCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010029 GO:0010033 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

101

Amino Acids

10.82

Weight (kDa)

9.89

Isoelectric Point (pI)

24.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28390 FvH4_4g28390
malus_domestica	MD13G1049600.v1.1
prunus_persica	Prupe.1G302100_v2.0.a1 Prupe.1G302300_v2.0.a1 Prupe.1G302300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0436321
rosa_roxburghii	Rroxscaffold_5G00377500
rosa_samantha	Rh4AG347200 Rh4BG356100 Rh4CG370700 Rh4DG349800
rosa_wichuraiana	Rw4G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AcuI	CTGAAG	2 cut(s)	83, 204
AfaI	GTAC	2 cut(s)	285, 294
AfiI	CCNNNNNNNGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	75
AoxI	GGCC	3 cut(s)	132, 168, 195
ApeKI	GCWGC	3 cut(s)	209, 248, 251
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	221, 235, 263
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	3 cut(s)	210, 249, 252
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	211, 250, 253
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	59, 264
BmsI	GCATC	2 cut(s)	131, 233
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	2 cut(s)	197, 259
Bse1I	ACTGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	2 cut(s)	20, 156
BseXI	GCAGC	3 cut(s)	221, 235, 263
BsgI	GTGCAG	2 cut(s)	228, 252
BshFI	GGCC	3 cut(s)	134, 170, 197
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	198, 260
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	134, 170, 197
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	47
BspANI	GGCC	3 cut(s)	134, 170, 197
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	59, 264
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	190
BsrFI	RCCGGY	2 cut(s)	197, 259
BsrI	ACTGG	1 cut(s)	80
BssAI	RCCGGY	2 cut(s)	197, 259
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	168, 199, 261
BstDEI	CTNAG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 260
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	221, 235, 263
BsuRI	GGCC	3 cut(s)	134, 170, 197
BtgZI	GCGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	168, 199, 261
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	2 cut(s)	197, 259
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	284, 293
CviQI	GTAC	2 cut(s)	284, 293
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	83, 204
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaiI	YATR	2 cut(s)	119, 304
FaqI	GGGAC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	210, 249, 252
Fsp4HI	GCNGC	3 cut(s)	210, 249, 252
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	3 cut(s)	210, 249, 252
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	134, 170, 197
HapII	CCGG	2 cut(s)	198, 260
HhaI	GCGC	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	198, 260
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	73, 124, 238, 274
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	209, 251, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 260
HpyF3I	CTNAG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	11
KroI	GCCGGC	2 cut(s)	197, 259
KroNI	GCCGGC	2 cut(s)	199, 261
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	43, 70, 268
LpnPI	CCDG	9 cut(s)	53, 61, 74, 152, 195, 211, 219, 273, 279
Lsp1109I	GCAGC	3 cut(s)	221, 235, 263
LweI	GCATC	2 cut(s)	131, 233
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	13, 47, 134
MroNI	GCCGGC	2 cut(s)	197, 259
MspI	CCGG	2 cut(s)	198, 260
MwoI	GCNNNNNNNGC	2 cut(s)	230, 260
NaeI	GCCGGC	2 cut(s)	199, 261
NdeII	GATC	1 cut(s)	15
NgoMIV	GCCGGC	2 cut(s)	197, 259
NlaIV	GGNNCC	2 cut(s)	59, 264
NmeAIII	GCCGAG	1 cut(s)	160
PdiI	GCCGGC	2 cut(s)	199, 261
PkrI	GCNGC	3 cut(s)	211, 250, 253
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	59, 264
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	285, 294
RsaNI	GTAC	2 cut(s)	284, 293
SatI	GCNGC	3 cut(s)	210, 249, 252
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	5 cut(s)	48, 63, 184, 285, 301
SfaNI	GCATC	2 cut(s)	131, 233
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	18
TatI	WGTACW	1 cut(s)	292
TscAI	CASTG	1 cut(s)	80
TseI	GCWGC	3 cut(s)	209, 248, 251
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.