MD13G1055200.v1.1

amino acid transmembrane transporter activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0019267
Physical Location & Seq
Reverse (-)
3866807 .. 3867641
835 bp
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UTR
Exon/CDS
Intron
MD13G1055200.v1.1.491

Sequence Viewer

Length: 426 bp
ATGCTTGTTTTTCCCGGTATTTTCCATCCACTGCGACTCAACTTGAATGACCTCCTCTCTCCTTCGTCTAGGCCTCTGGTTTCCCATTTTTGTAGGATTACATTAAGCACCATCGGACTAATTTCTCTCGTCTTCTTGGGCGCAAATTTTATTCCCAGCATCTGTGATGTTTTCCAGTTCTCTGGAGCGACCGCTACAGTCTGCATTGGATTCATCTTTCCTGCTGCCATTGCTCTAAGGGATGGCATAGCAACGATGAAGGACAAGATCTTATCTGTTTTCATGATCGCTCTTGCTGTGTTTTCGAATTTGATAGAGATATACATCGATGCTACTGCCCTTTTCAAACAGAAGGTGTCCATTAATGCATGGTTTTATATTGTTCAGAGGCTATTGTTAGATGAATATCCTATACTATACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04724 ko04727 ko04974 map04724 map04727 map04974
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

142

Amino Acids

15.69

Weight (kDa)

7.73

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019267)

Species Orthologous Gene IDs
malus_domestica MD13G1055200.v1.1
rosa_chinensis RchiOBHm_Chr2g0117941
rosa_samantha Rh2BG283200 Rh2DG279500 Rh2DG297500 Rh5BG497900 Rh5CG224700 Rh5CG521700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 145, 307
AgsI TTSAA 2 cut(s) 46, 346
AlwNI CAGNNNCTG 1 cut(s) 162
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 2 cut(s) 145, 307
AseI ATTAAT 1 cut(s) 363
AspLEI GCGC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 15
AsuII TTCGAA 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 211
BccI CCATC 3 cut(s) 33, 119, 236
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BcnI CCSGG 1 cut(s) 15
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 2 cut(s) 195, 422
BglII AGATCT 1 cut(s) 267
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 2 cut(s) 168, 319
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 15
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 2 cut(s) 323, 405
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 228
Bse8I GATNNNNATC 2 cut(s) 323, 405
BseCI ATCGAT 1 cut(s) 327
BseGI GGATG 2 cut(s) 25, 247
BseJI GATNNNNATC 2 cut(s) 323, 405
BseMI GCAATG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 327
BsiEI CGRYCG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 15
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 305
Bsp143I GATC 2 cut(s) 267, 285
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 327
BspHI TCATGA 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 1 cut(s) 175
BssMI GATC 2 cut(s) 267, 285
Bst4CI ACNGT 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 25, 247
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 270, 288
BstMBI GATC 2 cut(s) 267, 285
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 2 cut(s) 195, 422
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 267
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 2 cut(s) 25, 247
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 162
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 327
CviAII CATG 2 cut(s) 283, 369
CviJI RGCY 2 cut(s) 73, 391
CviKI_1 RGCY 2 cut(s) 73, 391
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 269, 287
DpnII GATC 2 cut(s) 267, 285
Eco147I AGGCCT 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 370
FaeI CATG 2 cut(s) 286, 372
FaiI YATR 7 cut(s) 248, 284, 322, 370, 378, 413, 418
FatI CATG 2 cut(s) 282, 368
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 12, 254
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 225
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 286, 372
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 2 cut(s) 36, 210
HpaII CCGG 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 116, 387
Hpy188III TCNNGA 2 cut(s) 183, 283
HpyAV CCTTC 3 cut(s) 72, 253, 346
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 204, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 2 cut(s) 286, 372
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 267, 285
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 6 cut(s) 28, 62, 168, 169, 188, 234
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 2 cut(s) 168, 319
MaeI CTAG 1 cut(s) 69
MalI GATC 2 cut(s) 269, 287
MboI GATC 2 cut(s) 267, 285
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 267
MluCI AATT 3 cut(s) 120, 145, 307
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 4 cut(s) 62, 65, 84, 381
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 2 cut(s) 104, 363
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 1 cut(s) 15
NdeII GATC 2 cut(s) 267, 285
NlaIII CATG 2 cut(s) 286, 372
NsiI ATGCAT 1 cut(s) 370
NspV TTCGAA 1 cut(s) 305
PagI TCATGA 1 cut(s) 282
PceI AGGCCT 1 cut(s) 73
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 267
SaqAI TTAA 2 cut(s) 104, 363
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 267, 285
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 15
SetI ASST 3 cut(s) 54, 357, 423
SfaNI GCATC 2 cut(s) 168, 319
SfcI CTRYAG 2 cut(s) 195, 422
SfuI TTCGAA 1 cut(s) 305
Sse9I AATT 3 cut(s) 120, 145, 307
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 69
StuI AGGCCT 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 305, 327
TasI AATT 3 cut(s) 120, 145, 307
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 104, 363
Tru9I TTAA 2 cut(s) 104, 363
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 4 cut(s) 202, 271, 272, 417
TspRI CASTG 1 cut(s) 36
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 2 cut(s) 145, 307
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.