Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019267

Physical Location & Seq

Genomic Coordinates Forward (+)

35307357 .. 35308905

Gene Structure 1549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG297500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATCTTCTTGAATACTTTTTCTGCAGTTCATAGCATTGACAATGAACTTGAAGACTCTACACAGATAAGAGGGATTGTGCAAACCTCACTTGCTCTATGCTCATCTGTATACATAATGACAAGCCTTTTTGGATTCCTTCTATTTGGGGATGGAACTCTTGACGATGTGCTTGCCAATTTTGATGCCAACCTTGGCATTCCTTATGGTTCCTTCCTTAATGATGCCGTTCGCGTCAGCTATGCTGCTCACCTTATGCTTGTGTTTCCTGTCGTCTTCTTCCCCTTGCGGCTCAACTTGGATGGCCGTTTCTTTCCCTCTTCAAGGCCTTTGGTTCTTGACAACATGAGATTTGCCCTTGTCACAGTTGGGCTGATTGGTATTATCTTCTTGGGTGCAAACTTTATACCCAGCATCTGGGATGCTTTCCAATTCACTGGAGCAACTGCCGCAGTGTGCATCGGGTTCATCTTCCTTGCTGCAATTACACTCAAGGATCGACACAACATAGCAACTAAGAAGGACAAGATCTTGAGTATTGTTATGATTGTCCTTGCTGTATTCTCAAACGTGGTGGCAATATATAGCGATGCCTATGCCTTGTTCAAGAATGCCAACACTCCATCACTGCGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071731 GO:0071732 GO:0097366 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04724 ko04727 ko04974 map04724 map04727 map04974

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

212

Amino Acids

23.26

Weight (kDa)

5.52

Isoelectric Point (pI)

19.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	11 - 196	1e-17	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019267)

Species	Orthologous Gene IDs
malus_domestica	MD13G1055200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117941
rosa_samantha	Rh2BG283200 Rh2DG279500 Rh2DG297500 Rh5BG497900 Rh5CG224700 Rh5CG521700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	289, 450
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	304
AdeI	CACNNNGTG	1 cut(s)	632
AfiI	CCNNNNNNNGG	2 cut(s)	324, 417
AgsI	TTSAA	4 cut(s)	13, 53, 324, 607
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
AlwI	GGATC	1 cut(s)	504
AlwNI	CAGNNNCTG	1 cut(s)	417
AoxI	GGCC	2 cut(s)	304, 326
ApeKI	GCWGC	2 cut(s)	245, 479
AsuHPI	GGTGA	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	60, 268
BbvI	GCAGC	2 cut(s)	232, 466
BccI	CCATC	3 cut(s)	146, 296, 631
BceAI	ACGGC	2 cut(s)	212, 291
BcgI	CGANNNNNNTGC	4 cut(s)	155, 189, 578, 612
BfmI	CTRYAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	4 cut(s)	246, 290, 450, 480
BlsI	GCNGC	4 cut(s)	247, 291, 451, 481
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	6 cut(s)	175, 214, 412, 423, 468, 580
BpiI	GAAGAC	2 cut(s)	60, 268
BpmI	CTGGAG	1 cut(s)	459
BpuEI	CTTGAG	2 cut(s)	476, 553
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 417
Bse1I	ACTGG	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	3 cut(s)	157, 307, 427
BseLI	CCNNNNNNNGG	2 cut(s)	324, 417
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	232, 466
BseYI	CCCAGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	306, 328
BslI	CCNNNNNNNGG	2 cut(s)	324, 417
BsmI	GAATGC	2 cut(s)	198, 616
BsnI	GGCC	2 cut(s)	306, 328
Bsp143I	GATC	3 cut(s)	3, 496, 528
BspACI	CCGC	2 cut(s)	289, 450
BspANI	GGCC	2 cut(s)	306, 328
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	3, 496, 528
BssNAI	GTATAC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	193
Bst1107I	GTATAC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	516
BstENI	CCTNNNNNAGG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	157, 307, 427
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	3 cut(s)	6, 499, 531
BstMBI	GATC	3 cut(s)	3, 496, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	232, 466
BstV2I	GAAGAC	2 cut(s)	60, 268
BstX2I	RGATCY	1 cut(s)	528
BstXI	CCANNNNNNTGG	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	528
BstZ17I	GTATAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	306, 328
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	157, 307, 427
BtsI	GCAGTG	2 cut(s)	459, 626
BtsIMutI	CAGTG	3 cut(s)	435, 459, 626
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	417
CseI	GACGC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	6 cut(s)	126, 240, 292, 306, 328, 373
CviKI_1	RGCY	6 cut(s)	126, 240, 292, 306, 328, 373
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	3 cut(s)	5, 498, 530
DpnII	GATC	3 cut(s)	3, 496, 528
DraIII	CACNNNGTG	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	349
FatI	CATG	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	4 cut(s)	246, 290, 450, 480
FokI	GGATG	3 cut(s)	164, 314, 434
Fsp4HI	GCNGC	4 cut(s)	246, 290, 450, 480
GluI	GCNGC	4 cut(s)	246, 290, 450, 480
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	306, 328
HgaI	GACGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	349
HinfI	GANTC	2 cut(s)	56, 135
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	5 cut(s)	10, 161, 338, 532, 607
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	149, 223, 514
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	5 cut(s)	26, 82, 398, 459, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	3, 496, 528
LmnI	GCTCC	1 cut(s)	440
LpnPI	CCDG	4 cut(s)	282, 403, 423, 424
Lsp1109I	GCAGC	2 cut(s)	232, 466
LweI	GCATC	6 cut(s)	175, 214, 412, 423, 468, 580
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	5, 498, 530
MboI	GATC	3 cut(s)	3, 496, 528
MboII	GAAGA	6 cut(s)	65, 268, 271, 312, 379, 463
MflI	RGATCY	1 cut(s)	528
MluCI	AATT	3 cut(s)	178, 431, 483
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	65, 97, 328
MseI	TTAA	1 cut(s)	219
Mva1269I	GAATGC	2 cut(s)	198, 616
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	3 cut(s)	3, 496, 528
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	328
PctI	GAATGC	2 cut(s)	198, 616
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	4 cut(s)	247, 291, 451, 481
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	246, 290, 450, 480
Sau3AI	GATC	3 cut(s)	3, 496, 528
SchI	GAGTC	1 cut(s)	50
SetI	ASST	5 cut(s)	89, 195, 242, 255, 573
SfaNI	GCATC	6 cut(s)	175, 214, 412, 423, 468, 580
SfcI	CTRYAG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	491, 532
SmoI	CTYRAG	2 cut(s)	491, 532
Sse9I	AATT	3 cut(s)	178, 431, 483
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	289, 450
StuI	AGGCCT	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	1 cut(s)	499
TasI	AATT	3 cut(s)	178, 431, 483
TauI	GCSGC	2 cut(s)	292, 452
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	3 cut(s)	442, 459, 633
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	245, 479
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	20, 60, 457
TspRI	CASTG	3 cut(s)	442, 459, 633
Van91I	CCANNNNNTGG	1 cut(s)	417
XagI	CCTNNNNNAGG	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.