Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019267

Physical Location & Seq

Genomic Coordinates Forward (+)

73124456 .. 73128044

Gene Structure 3589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG521700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTTGTGTTTCCTGTCGTCTTCTTCCCCTTGCGGCTCAACTTGGATGGCCTTTTCTTTCCCTCTTCAAGGCCTTTGGTTCTTGACAACATGAGATTTGCACTTGTCACAGTTGGGCTGATTGGTATTATCTTCTTGGGTGCAAACTTTATACCCAGCATCTGGGACGCTTTCCAATTCACTGGAGCAACTGCCGCAGTGTGCATCGGGTTCATCTTCCCTGCTGCAATTACACTCAAGGATCGACACAACATAGCAACTAAGAAGGACAAGATCTTGAGTATTGTTATGATTGTCCTTGCTGTATTCTCAAACGTGGTAGCAATATATAGCGATGCCTATGCCTTGTTCAAGAATGCCAACACTCCATCACCGCGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071731 GO:0071732 GO:0097366 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04724 ko04727 ko04974 map04724 map04727 map04974

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

127

Amino Acids

13.97

Weight (kDa)

9.36

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 111	1e-05	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019267)

Species	Orthologous Gene IDs
malus_domestica	MD13G1055200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117941
rosa_samantha	Rh2BG283200 Rh2DG279500 Rh2DG297500 Rh5BG497900 Rh5CG224700 Rh5CG521700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccII	CGCG	1 cut(s)	376
AciI	CCGC	3 cut(s)	34, 195, 374
AclWI	GGATC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	69, 162
AgsI	TTSAA	2 cut(s)	69, 352
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	162
AoxI	GGCC	2 cut(s)	49, 71
ApeKI	GCWGC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	41, 376
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	3 cut(s)	35, 195, 225
BlsI	GCNGC	3 cut(s)	36, 196, 226
BmsI	GCATC	3 cut(s)	168, 213, 325
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	221, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 162
Bse1I	ACTGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	69, 162
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	2 cut(s)	51, 73
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	69, 162
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	51, 73
Bsp143I	GATC	2 cut(s)	241, 273
BspACI	CCGC	3 cut(s)	34, 195, 374
BspANI	GGCC	2 cut(s)	51, 73
BspFNI	CGCG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	241, 273
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	244, 276
BstMBI	GATC	2 cut(s)	241, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	51, 73
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	180, 204
CaiI	CAGNNNCTG	1 cut(s)	162
CseI	GACGC	1 cut(s)	176
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	4 cut(s)	37, 51, 73, 118
CviKI_1	RGCY	4 cut(s)	37, 51, 73, 118
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	243, 275
DpnII	GATC	2 cut(s)	241, 273
DraIII	CACNNNGTG	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	94
FaiI	YATR	7 cut(s)	92, 152, 254, 290, 328, 330, 342
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	35, 195, 225
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	35, 195, 225
GluI	GCNGC	3 cut(s)	35, 195, 225
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	51, 73
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	363
Hpy188III	TCNNGA	3 cut(s)	83, 277, 352
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	101, 143, 204, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	241, 273
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	5 cut(s)	27, 148, 168, 169, 234
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	3 cut(s)	168, 213, 325
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	243, 275
MboI	GATC	2 cut(s)	241, 273
MboII	GAAGA	5 cut(s)	13, 16, 57, 124, 208
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	2 cut(s)	176, 228
MnlI	CCTC	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	361
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	241, 273
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	73
PctI	GAATGC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	36, 196, 226
PspFI	CCCAGC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	273
SatI	GCNGC	3 cut(s)	35, 195, 225
Sau3AI	GATC	2 cut(s)	241, 273
SetI	ASST	1 cut(s)	318
SfaNI	GCATC	3 cut(s)	168, 213, 325
SmlI	CTYRAG	2 cut(s)	236, 277
SmoI	CTYRAG	2 cut(s)	236, 277
Sse9I	AATT	2 cut(s)	176, 228
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	3 cut(s)	34, 195, 374
StuI	AGGCCT	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	244
TasI	AATT	2 cut(s)	176, 228
TauI	GCSGC	2 cut(s)	37, 197
TscAI	CASTG	2 cut(s)	187, 204
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	187, 204
Van91I	CCANNNNNTGG	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.