Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019267

Physical Location & Seq

Genomic Coordinates Forward (+)

31664881 .. 31665958

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG279500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACAAGCCTTTTTGGATTCCTTCTATTTAGGGATGGAACTCTTGACGATGTGCTTGCCAATTTTGATGCCAACCTTGGCATTCCTTATGGTTCCTTCCTTAATGATGTTGTTCGCGTCAGCTATGCTGCTCACCTTATGCTTGTGTTTCCCGTCGTCTTCTTCCCCTTGCGGCTCAACTTGGATGGCCTTTTCTTTCCCTCTTCAAGGCCTTTGGTTCTTGACAACATGAGATTTGCACTTGTCACATTTGGGCTGATTGGTATTATCTTCTTGGGTGCAAACTTTATACCCAGCATCTGGGACGCTTTCCAATTCACTGGAGCAACTGCCGCAGTGTGCATCGGGTTCATCTTCCCAGCTGCAATTACACTCAAGGATCGACACAACATAGCAACTAAGAAGGACAAGATCTTGAGTATTGTTATGATTTTCCTTGCTGTATTCTCAAACGTGGTGGCAATATATAGCGATGCCTATGCCTTGTTCAAGAATGCCAACACTCCATCACCGTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071731 GO:0071732 GO:0097366 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04724 ko04727 ko04974 map04724 map04727 map04974

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

173

Amino Acids

19.06

Weight (kDa)

6.05

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	3 - 157	8.1e-14	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019267)

Species	Orthologous Gene IDs
malus_domestica	MD13G1055200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117941
rosa_samantha	Rh2BG283200 Rh2DG279500 Rh2DG297500 Rh5BG497900 Rh5CG224700 Rh5CG521700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	300
AccII	CGCG	1 cut(s)	117
AciI	CCGC	2 cut(s)	172, 333
AclWI	GGATC	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	207, 300
AgsI	TTSAA	2 cut(s)	207, 490
AluBI	AGCT	2 cut(s)	123, 362
AluI	AGCT	2 cut(s)	123, 362
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	300
AoxI	GGCC	2 cut(s)	187, 209
ApeKI	GCWGC	2 cut(s)	128, 362
AsuHPI	GGTGA	2 cut(s)	125, 501
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	115, 349
BccI	CCATC	3 cut(s)	29, 179, 514
BcgI	CGANNNNNNTGC	4 cut(s)	38, 72, 461, 495
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	4 cut(s)	129, 173, 333, 363
BlsI	GCNGC	4 cut(s)	130, 174, 334, 364
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	4 cut(s)	58, 306, 351, 463
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	359, 436
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 300
Bse1I	ACTGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	40, 190
BseLI	CCNNNNNNNGG	2 cut(s)	207, 300
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	115, 349
BseYI	CCCAGC	2 cut(s)	293, 358
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	189, 211
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	207, 300
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	2 cut(s)	81, 499
BsnI	GGCC	2 cut(s)	189, 211
Bsp143I	GATC	2 cut(s)	379, 411
BspACI	CCGC	2 cut(s)	172, 333
BspANI	GGCC	2 cut(s)	189, 211
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	379, 411
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	399
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	40, 190
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	382, 414
BstMBI	GATC	2 cut(s)	379, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	115, 349
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	189, 211
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	40, 190
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	318, 342
Cac8I	GCNNGC	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	300
CseI	GACGC	2 cut(s)	106, 314
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	7 cut(s)	9, 123, 175, 189, 211, 256, 362
CviKI_1	RGCY	7 cut(s)	9, 123, 175, 189, 211, 256, 362
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	381, 413
DpnII	GATC	2 cut(s)	379, 411
DraIII	CACNNNGTG	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	232
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	129, 173, 333, 363
FokI	GGATG	2 cut(s)	47, 197
Fsp4HI	GCNGC	4 cut(s)	129, 173, 333, 363
GluI	GCNGC	4 cut(s)	129, 173, 333, 363
GsaI	CCCAGC	2 cut(s)	297, 362
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	189, 211
HgaI	GACGC	2 cut(s)	106, 314
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	2 cut(s)	125, 501
Hpy188III	TCNNGA	4 cut(s)	44, 221, 415, 490
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	32, 106, 397
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	239, 281, 342, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	379, 411
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	4 cut(s)	286, 306, 307, 372
Lsp1109I	GCAGC	2 cut(s)	115, 349
LweI	GCATC	4 cut(s)	58, 306, 351, 463
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	381, 413
MboI	GATC	2 cut(s)	379, 411
MboII	GAAGA	5 cut(s)	151, 154, 195, 262, 346
MflI	RGATCY	1 cut(s)	411
MluCI	AATT	3 cut(s)	61, 314, 366
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	362
Mva1269I	GAATGC	2 cut(s)	81, 499
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	2 cut(s)	379, 411
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	211
PctI	GAATGC	2 cut(s)	81, 499
PfeI	GAWTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	300
PkrI	GCNGC	4 cut(s)	130, 174, 334, 364
PspFI	CCCAGC	2 cut(s)	293, 358
PspN4I	GGNNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	4 cut(s)	129, 173, 333, 363
Sau3AI	GATC	2 cut(s)	379, 411
SetI	ASST	5 cut(s)	78, 125, 138, 364, 456
SfaNI	GCATC	4 cut(s)	58, 306, 351, 463
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	2 cut(s)	374, 415
SmoI	CTYRAG	2 cut(s)	374, 415
Sse9I	AATT	3 cut(s)	61, 314, 366
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	172, 333
StuI	AGGCCT	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	513
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	382
TasI	AATT	3 cut(s)	61, 314, 366
TauI	GCSGC	2 cut(s)	175, 335
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	325, 342
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	128, 362
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	340
TspRI	CASTG	2 cut(s)	325, 342
Van91I	CCANNNNNTGG	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.