Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009995

Physical Location & Seq

Genomic Coordinates Forward (+)

5615636 .. 5621456

Gene Structure 5821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1080300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTTGCTCTATCCTGCTTCTGCTTATCGGGTCTAGGGTTTACGTGCATGCAAAGCCACAGGGCAGTATATTCTCTGCGATTGCACAAGTACTTGTTGCTGCTCATAAAAAACGCCACGTTAAGCTTGCGGAAGAAGCAGAAATTATAGAAGTTGACAAATTCTATGATCCTCGAATATTCAAGGGGCATTACGCCTCTAAGCTCCCTCTCACAAACCAGCTCAGGTTCTTGAACAAGGCTGCTGTAATATTGGATAACGATCTGAAGCCTGATGGTTCTCCAGTCGATAACTGGAGGCTGTGCAGCGTGCAACAAGTGGAAGAACTTAAATGCGTATTAAAAACAATCCCGATATGGTCAACGGCCATAGTTAGCCTGACCGCCATGATACAGCAGGGCACGTTTACTGTGTCCCAAGCTCTAAAAATGGACCGTCATCTCGGCGCTAACTTCGAAGTCCCAGCTGGGTCCATCAGCGTCATCTCCTTTCTCACCATTGGCCTCTGGCTCCCAATCTACGACCGGATTATAGTCCCGTCCCTCAGAAAATTTACAAAGCTCGAAGGTGGGATTACAGTCCTGCAGAGATGTGGAATCGGGATTATATTCTCCGTCCTGTCCATGGCAGTGGCCGGAGTAATCGAAAAGGAGAGAAGGGATTTTGCAAATTTGCACCCTGACGCACATGTGTCATTCCTCTGGCTAGCCCCGCAACTTATTCTGATGGGGCTCTGTGAGGCGTTCAATATTATAGGTCTGCTGGAGTTTTTCAATCGGGAGTTCCCCGACCACATGCGAAGCGTTGGAAATGCCCTTGTGTCTTGCTCCTTTGCCGGTGCGAGCTACTTGAGCAGTTTCACGGTGACTGTGCTGCACCATGTGACTGGGACAGAGAAGCACCCGGATTGGTTGACCAATGACCTCAATGCTGGGAGATTGGACTACTTCTACTTCCTATTGGCTGGGATTGGGGTTCTGACTTTTGCCTACTTTCTGTTTTGTGCGCAACGTTATCATTACAAGGCCACAAATGTGAACGTTGAAGAGAAGCCATATGATACTGATCAGGTGCAGTTAGGTTCAACAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0007154 GO:0007275 GO:0008150 GO:0008509 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010098 GO:0010154 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022414 GO:0022857 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0034220 GO:0043562 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0061458 GO:0071496 GO:0071705 GO:0071944 GO:0080054 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

PTR2

Protein Analysis

366

Amino Acids

40.69

Weight (kDa)

7.66

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 298	5.1e-47	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27080 AT1G27080 AT1G69870
fragaria_vesca	FvH4_4g35800 FvH4_4g35800
malus_domestica	MD13G1080300.v1.1 MD16G1080100.v1.1
prunus_persica	Prupe.1G266400_v2.0.a1
pyrus_communis	pycom13g06950 pycom16g06920
rosa_chinensis	RchiOBHm_Chr4g0445331
rosa_laevigata	RLG00000005748
rosa_multiflora	Rmu_sc0000050.1_g000012
rosa_roxburghii	Rroxscaffold_5G00385850
rosa_rugosa	Rorug04G0360700 Rorug04G0360800
rosa_samantha	Rh4AG421800 Rh4BG433800 Rh4CG448700 Rh4DG429800
rosa_wichuraiana	Rw4G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1008
AciI	CCGC	3 cut(s)	131, 384, 713
AclI	AACGTT	2 cut(s)	1012, 1041
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	2 cut(s)	366, 633
AcsI	RAATTY	3 cut(s)	161, 551, 670
AcuI	CTGAAG	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	625
AflIII	ACRYGT	1 cut(s)	688
AgsI	TTSAA	6 cut(s)	184, 235, 748, 775, 1046, 1086
AleI	CACNNNNGTG	1 cut(s)	1034
AluBI	AGCT	7 cut(s)	127, 205, 223, 422, 467, 562, 846
AluI	AGCT	7 cut(s)	127, 205, 223, 422, 467, 562, 846
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	4 cut(s)	366, 502, 633, 1026
ApeKI	GCWGC	4 cut(s)	101, 242, 306, 874
ApoI	RAATTY	3 cut(s)	161, 551, 670
AspLEI	GCGC	2 cut(s)	449, 1009
AspS9I	GGNCC	2 cut(s)	433, 471
AsuC2I	CCSGG	1 cut(s)	905
AsuHPI	GGTGA	2 cut(s)	487, 877
AsuII	TTCGAA	1 cut(s)	456
AsuNHI	GCTAGC	1 cut(s)	706
AvaII	GGWCC	2 cut(s)	433, 471
BaeGI	GKGCMC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	88, 229, 318, 861
BccI	CCATC	3 cut(s)	269, 482, 721
BceAI	ACGGC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	1066
BcnI	CCSGG	1 cut(s)	905
BfaI	CTAG	2 cut(s)	36, 707
BfmI	CTRYAG	1 cut(s)	584
BfoI	RGCGCY	1 cut(s)	450
BisI	GCNGC	4 cut(s)	102, 243, 307, 875
BlsI	GCNGC	4 cut(s)	103, 244, 308, 876
BmcAI	AGTACT	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	905
Bme18I	GGWCC	2 cut(s)	433, 471
BmgT120I	GGNCC	2 cut(s)	433, 471
BmiI	GGNNCC	2 cut(s)	472, 512
BmrFI	CCNGG	1 cut(s)	905
BmrI	ACTGGG	1 cut(s)	897
BmtI	GCTAGC	1 cut(s)	710
BmuI	ACTGGG	1 cut(s)	897
BpmI	CTGGAG	3 cut(s)	267, 316, 785
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	871
BpuMI	CCSGG	1 cut(s)	905
BsaAI	YACGTR	1 cut(s)	46
BsaBI	GATNNNNATC	2 cut(s)	261, 1065
BsaJI	CCNNGG	1 cut(s)	624
BsaWI	WCCGGW	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	3 cut(s)	284, 299, 892
Bse8I	GATNNNNATC	2 cut(s)	261, 1065
BseDI	CCNNGG	1 cut(s)	624
BseJI	GATNNNNATC	2 cut(s)	261, 1065
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMII	CTCAG	2 cut(s)	238, 559
BseNI	ACTGG	3 cut(s)	284, 299, 892
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	4 cut(s)	88, 229, 318, 861
BseYI	CCCAGC	4 cut(s)	463, 467, 932, 965
BsgI	GTGCAG	3 cut(s)	325, 860, 1094
Bsh1285I	CGRYCG	1 cut(s)	526
BshFI	GGCC	4 cut(s)	368, 504, 635, 1028
BsiEI	CGRYCG	1 cut(s)	526
BsiSI	CCGG	4 cut(s)	526, 636, 837, 905
BslFI	GGGAC	5 cut(s)	400, 446, 521, 526, 904
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmFI	GGGAC	5 cut(s)	400, 446, 521, 526, 904
BsnI	GGCC	4 cut(s)	368, 504, 635, 1028
Bsp119I	TTCGAA	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	404, 735
Bsp143I	GATC	3 cut(s)	169, 262, 1066
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	3 cut(s)	131, 384, 713
BspANI	GGCC	4 cut(s)	368, 504, 635, 1028
BspCNI	CTCAG	2 cut(s)	237, 558
BspLI	GGNNCC	2 cut(s)	472, 512
BspMAI	CTGCAG	1 cut(s)	588
BspOI	GCTAGC	1 cut(s)	710
BspPI	GGATC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	3 cut(s)	284, 299, 892
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	3 cut(s)	169, 262, 1066
BssT1I	CCWWGG	1 cut(s)	624
Bst4CI	ACNGT	5 cut(s)	412, 437, 580, 865, 871
Bst6I	CTCTTC	1 cut(s)	1041
BstBAI	YACGTR	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	456
BstC8I	GCNNGC	6 cut(s)	7, 51, 129, 311, 708, 844
BstDEI	CTNAG	3 cut(s)	201, 224, 545
BstDSI	CCRYGG	1 cut(s)	624
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	2 cut(s)	449, 1009
BstKTI	GATC	3 cut(s)	172, 265, 1069
BstMBI	GATC	3 cut(s)	169, 262, 1066
BstMCI	CGRYCG	1 cut(s)	526
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 137, 712, 852
BstNSI	RCATGY	3 cut(s)	53, 692, 799
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	1 cut(s)	584
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	4 cut(s)	88, 229, 318, 861
BstXI	CCANNNNNNTGG	2 cut(s)	631, 887
BsuRI	GGCC	4 cut(s)	368, 504, 635, 1028
BtgI	CCRYGG	1 cut(s)	624
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	6 cut(s)	7, 51, 129, 311, 708, 844
CfoI	GCGC	2 cut(s)	449, 1009
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	2 cut(s)	433, 471
CseI	GACGC	2 cut(s)	469, 692
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	6 cut(s)	50, 388, 625, 689, 796, 881
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	201, 224, 545
DpnI	GATC	3 cut(s)	171, 264, 1068
DpnII	GATC	3 cut(s)	169, 262, 1066
DraIII	CACNNNGTG	1 cut(s)	883
EaeI	YGGCCR	2 cut(s)	366, 633
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
Eco130I	CCWWGG	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	433, 471
Eco57I	CTGAAG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	6 cut(s)	53, 391, 628, 692, 799, 884
FaqI	GGGAC	5 cut(s)	400, 446, 521, 526, 904
FatI	CATG	6 cut(s)	49, 387, 624, 688, 795, 880
FauI	CCCGC	1 cut(s)	720
FauNDI	CATATG	1 cut(s)	1057
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	4 cut(s)	102, 243, 307, 875
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	4 cut(s)	102, 243, 307, 875
FspBI	CTAG	2 cut(s)	36, 707
FspI	TGCGCA	1 cut(s)	1008
GlaI	GCGC	2 cut(s)	448, 1008
GluI	GCNGC	4 cut(s)	102, 243, 307, 875
GsaI	CCCAGC	4 cut(s)	467, 471, 936, 969
GsuI	CTGGAG	3 cut(s)	267, 316, 785
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	4 cut(s)	368, 504, 635, 1028
HapII	CCGG	4 cut(s)	526, 636, 837, 905
HgaI	GACGC	2 cut(s)	469, 692
HhaI	GCGC	2 cut(s)	449, 1009
Hin1II	CATG	6 cut(s)	53, 391, 628, 692, 799, 884
Hin6I	GCGC	2 cut(s)	447, 1007
HinP1I	GCGC	2 cut(s)	447, 1007
HincII	GTYRAC	3 cut(s)	157, 363, 915
HindII	GTYRAC	3 cut(s)	157, 363, 915
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	597
HpaII	CCGG	4 cut(s)	526, 636, 837, 905
HphI	GGTGA	2 cut(s)	487, 877
Hpy166II	GTNNAC	6 cut(s)	43, 157, 363, 408, 915, 1039
Hpy188I	TCNGA	4 cut(s)	267, 548, 726, 981
Hpy188III	TCNNGA	4 cut(s)	232, 352, 601, 779
Hpy8I	GTNNAC	6 cut(s)	43, 157, 363, 408, 915, 1039
HpyAV	CCTTC	2 cut(s)	560, 651
HpyCH4III	ACNGT	5 cut(s)	412, 437, 580, 865, 871
HpyCH4IV	ACGT	5 cut(s)	45, 120, 404, 1012, 1041
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 137, 712, 852
HpyF3I	CTNAG	3 cut(s)	201, 224, 545
HpySE526I	ACGT	5 cut(s)	45, 120, 404, 1012, 1041
Hsp92II	CATG	6 cut(s)	53, 391, 628, 692, 799, 884
HspAI	GCGC	2 cut(s)	447, 1007
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	3 cut(s)	169, 262, 1066
LmnI	GCTCC	3 cut(s)	210, 516, 833
Lsp1109I	GCAGC	4 cut(s)	88, 229, 318, 861
MaeI	CTAG	2 cut(s)	36, 707
MaeII	ACGT	5 cut(s)	45, 120, 404, 1012, 1041
MaeIII	GTNAC	2 cut(s)	865, 883
MalI	GATC	3 cut(s)	171, 264, 1068
MboI	GATC	3 cut(s)	169, 262, 1066
MboII	GAAGA	3 cut(s)	146, 335, 1058
MhlI	GDGCHC	2 cut(s)	404, 735
MluCI	AATT	4 cut(s)	144, 161, 551, 670
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	9 cut(s)	183, 208, 219, 291, 515, 554, 710, 733, 935
MseI	TTAA	4 cut(s)	123, 330, 341, 1096
MslI	CAYNNNNRTG	2 cut(s)	629, 1034
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	4 cut(s)	526, 636, 837, 905
MspR9I	CCNGG	1 cut(s)	905
MwoI	GCNNNNNNNGC	4 cut(s)	55, 137, 712, 852
NciI	CCSGG	1 cut(s)	905
NcoI	CCATGG	1 cut(s)	624
NdeI	CATATG	1 cut(s)	1057
NdeII	GATC	3 cut(s)	169, 262, 1066
NheI	GCTAGC	1 cut(s)	706
NlaIII	CATG	6 cut(s)	53, 391, 628, 692, 799, 884
NlaIV	GGNNCC	2 cut(s)	472, 512
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	865, 883
NsbI	TGCGCA	1 cut(s)	1008
NspI	RCATGY	3 cut(s)	53, 692, 799
NspV	TTCGAA	1 cut(s)	456
OliI	CACNNNNGTG	1 cut(s)	1034
PaeI	GCATGC	1 cut(s)	53
PciI	ACATGT	1 cut(s)	688
PfeI	GAWTC	1 cut(s)	597
PkrI	GCNGC	4 cut(s)	103, 244, 308, 876
Ppu21I	YACGTR	1 cut(s)	46
PscI	ACATGT	1 cut(s)	688
Psp1406I	AACGTT	2 cut(s)	1012, 1041
PspFI	CCCAGC	4 cut(s)	463, 467, 932, 965
PspN4I	GGNNCC	2 cut(s)	472, 512
PspPI	GGNCC	2 cut(s)	433, 471
PstI	CTGCAG	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	629, 1034
SaqAI	TTAA	4 cut(s)	123, 330, 341, 1096
SatI	GCNGC	4 cut(s)	102, 243, 307, 875
Sau3AI	GATC	3 cut(s)	169, 262, 1066
Sau96I	GGNCC	2 cut(s)	433, 471
ScaI	AGTACT	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	905
SduI	GDGCHC	2 cut(s)	404, 735
SfcI	CTRYAG	1 cut(s)	584
SfuI	TTCGAA	1 cut(s)	456
SinI	GGWCC	2 cut(s)	433, 471
SmiMI	CAYNNNNRTG	2 cut(s)	629, 1034
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	144, 161, 551, 670
SsiI	CCGC	3 cut(s)	131, 384, 713
SspI	AATATT	3 cut(s)	180, 252, 751
SspMI	CTAG	2 cut(s)	36, 707
StyD4I	CCNGG	1 cut(s)	903
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	5 cut(s)	412, 437, 580, 865, 871
TaiI	ACGT	5 cut(s)	48, 123, 407, 1015, 1044
TaqI	TCGA	5 cut(s)	175, 288, 456, 564, 645
TasI	AATT	4 cut(s)	144, 161, 551, 670
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	597
Tru1I	TTAA	4 cut(s)	123, 330, 341, 1096
Tru9I	TTAA	4 cut(s)	123, 330, 341, 1096
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	2 cut(s)	865, 883
TseI	GCWGC	4 cut(s)	101, 242, 306, 874
Tsp45I	GTSAC	2 cut(s)	865, 883
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	433, 471
XapI	RAATTY	3 cut(s)	161, 551, 670
XceI	RCATGY	3 cut(s)	53, 692, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
XspI	CTAG	2 cut(s)	36, 707
ZrmI	AGTACT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.