Rorug04G0360800

protein NRT1 PTR FAMILY 2.13-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
53348688 .. 53348903
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0360800.1

Sequence Viewer

Length: 216 bp
ATGGACATCACAGACGGCACCACCATTAAGATAAAGACCAAGGTGATCAAACTCGAAGGTTCGCGCCAGAAGTTCAACAGAAACTTCAAGCACCTCAATCTTGACTTCCTAACTCGTCTACCTATGAGTCCACTGGCAAGAAGAAGCTCAAAATGGAGACCTGGTTCGGCACTCGCAAGACGAGCGCCGCTATTTACAAGCGCTGAGCAGTTATGA

Protein Analysis

71

Amino Acids

8.16

Weight (kDa)

11.57

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009995)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 118
AccII CGCG 1 cut(s) 64
AciI CCGC 1 cut(s) 188
AfeI AGCGCT 1 cut(s) 202
AgsI TTSAA 2 cut(s) 76, 88
AjnI CCWGG 1 cut(s) 160
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 151
Aor51HI AGCGCT 1 cut(s) 202
AspLEI GCGC 3 cut(s) 66, 187, 203
AsuHPI GGTGA 1 cut(s) 55
BanI GGYRCC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 151
BfoI RGCGCY 2 cut(s) 188, 204
BisI GCNGC 1 cut(s) 188
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 45
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 2 cut(s) 188, 204
BstHHI GCGC 3 cut(s) 66, 187, 203
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstUI CGCG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 131
CfoI GCGC 3 cut(s) 66, 187, 203
CsiI ACCWGGT 1 cut(s) 160
CviJI RGCY 1 cut(s) 147
CviKI_1 RGCY 1 cut(s) 147
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaiI YATR 2 cut(s) 125, 214
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 188
GlaI GCGC 3 cut(s) 65, 186, 202
GluI GCNGC 1 cut(s) 188
HaeII RGCGCY 2 cut(s) 188, 204
HhaI GCGC 3 cut(s) 66, 187, 203
Hin6I GCGC 3 cut(s) 64, 185, 201
HinP1I GCGC 3 cut(s) 64, 185, 201
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 119, 131
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 2 cut(s) 119, 131
HpyAV CCTTC 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 204
HspAI GCGC 3 cut(s) 64, 185, 201
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 4 cut(s) 80, 119, 147, 174
MabI ACCWGGT 1 cut(s) 160
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 153
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 1 cut(s) 104
MseI TTAA 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 162
SetI ASST 6 cut(s) 45, 61, 96, 124, 149, 163
SexAI ACCWGGT 1 cut(s) 160
SsiI CCGC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 1 cut(s) 54
TauI GCSGC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 138
TspRI CASTG 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.