Rh4AG421800

protein NRT1 PTR FAMILY 2.13-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
71861410 .. 71865783
4374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG421800.1

Sequence Viewer

Length: 1443 bp
ATGGCGACACTGACAATGACAGCATGGTTGCCTAAGCTGCATCCTCCGCCGTGCAGCAGCGACCAGCTGAAATTGGGCCAGTGCCCACGTCCGAGCAAAGCCCAACTGGGCTTCTTAAGTTTGGGCCTGGGCTTTCTCTCGGTAGGCACGGGAGGAATTAGGCCCTGCAGCATCCCCTTTGGTGTTGACCAGTTTGACCCGAACACCAAAGAAGGAAAGAAAGGAATCAAAAGCTTCTTCAACTGGTACTACGCCACATTCACAGTTGTGTTGCTGATCACTTCAACTCTGGTGGTCTACATCCAAGACAAGATCAGCTGGACTTTGGGTTTTGGGATACCAACATTGCTCATGTGTGGTTCAATTGTGCTTCTGTTTATTGGAGTTAGGATTTACGTGCATGCTAAGCCACAAGGTAGCATGTTCGCCAGTATTGCTCAGGTTTTTGTTGCTGCTCACAAGAAACGACAACTTAAGCTTCCAGACGACAAACCCATTGATGGAAGCAAATTGTATGATCCTCCGGTGAAGGATTTGCTCATGCAAAAGCTCCCTCTCACCAACCAAATCAGGTTCCTGAACAAGGCCGCTATAATAGTGGACAATGATCTGAAGCCCGATGGCTCTCCAGTTAACAAATGGAGGCTTTGCAGCGTCCAACAAGTTGAAGAACTTAAATGTGTCATAAAAACCATGCCAATATGGGCTTCAGCTATCGTTAGCTTCACCGCCATGTCACAACAAGGAACATTCAGTGTATCCCAAGCCCTCAGATTAAATCGCCACCTTGGTCAGAATTTCGAAATACCAGCTGGTTCACTCATTGTCATCTCCTTGCTCACAATAGGAATATTTCTCCCGATCTACGACAGGCTCTTAGTACCCGCTCTTCGAAAAGTTACCAGAGACGAAGGTGGGATCACAGTTCTACAAAGAATCGGAATCGGGATTGTTTTTTCAGTCCTGGCAATGCTCGTAGCTGGTTTCATTGAAAAGGAAAGAAGAAATATGGCTAAATTGCATCCCCATGAACCCGTCTCATTCATTTGGTTGGCTCCACAACTTGGCCTGATGGGTCTTTGTGAGGCATTCAGTGCCATTGGACTGCTGGAATTCTTCAACCGGGAGTTTCCCGATCACATCAGGAGTGTTGGTAATGCACTTCTGTCTTGCTCTTTTGCAGGGTCAAGTTACTTGAGCAGTGTAGTGGTCACCGTTGTTCATCGTGTGACCGGAACACACAGAAAGCCAGATTGGTTGACCAATGATATCAATGCCGGCAGATTGGATTTGTTCTATTTCCTCTTGGCAGGGATAGGGTCTCTGAATTTTGTCTACTTCCTTTATTGTGCTCGACGATATCATTATAAGGGCACTGTACACAAGGAGGATGAGAACAACCCTTATGTTAATGTGGAGCTAGGTTCAACCACCACTGCTTGA

Protein Analysis

480

Amino Acids

53.18

Weight (kDa)

9.37

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 416 6e-74 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009995)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1368
AccB7I CCANNNNNTGG 1 cut(s) 1064
AccBSI CCGCTC 1 cut(s) 887
AccI GTMKAC 2 cut(s) 297, 1335
AciI CCGC 4 cut(s) 47, 588, 729, 885
AclWI GGATC 2 cut(s) 512, 926
AcsI RAATTY 3 cut(s) 796, 1112, 1327
AcuI CTGAAG 2 cut(s) 632, 693
AfaI GTAC 3 cut(s) 248, 882, 1380
AfiI CCNNNNNNNGG 3 cut(s) 500, 583, 1064
AflII CTTAAG 2 cut(s) 115, 473
AgsI TTSAA 7 cut(s) 241, 285, 363, 668, 992, 1120, 1428
AjiI CACGTC 1 cut(s) 89
AjnI CCWGG 2 cut(s) 126, 963
AjuI GAANNNNNNNTTGG 4 cut(s) 691, 723, 1237, 1269
AleI CACNNNNGTG 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 1354
Alw26I GTCTC 3 cut(s) 900, 1042, 1326
AlwI GGATC 2 cut(s) 512, 926
AoxI GGCC 5 cut(s) 76, 124, 161, 585, 1066
ApeKI GCWGC 6 cut(s) 37, 54, 57, 168, 452, 651
ApoI RAATTY 3 cut(s) 796, 1112, 1327
AspS9I GGNCC 3 cut(s) 76, 124, 162
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 4 cut(s) 538, 550, 718, 1204
AsuII TTCGAA 2 cut(s) 801, 892
BaeGI GKGCMC 2 cut(s) 86, 1376
BarI GAAGNNNNNNTAC 2 cut(s) 873, 905
Bbv12I GWGCWC 1 cut(s) 1354
BbvI GCAGC 6 cut(s) 24, 66, 69, 180, 439, 663
BccI CCATC 3 cut(s) 494, 614, 1066
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 128, 965
BciVI GTATCC 2 cut(s) 330, 769
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 3 cut(s) 900, 1042, 1326
BfaI CTAG 1 cut(s) 1421
BfmI CTRYAG 1 cut(s) 166
BfrI CTTAAG 2 cut(s) 115, 473
BfuI GTATCC 2 cut(s) 330, 769
BisI GCNGC 7 cut(s) 38, 55, 58, 169, 453, 588, 652
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 7 cut(s) 39, 56, 59, 170, 454, 589, 653
Bme1390I CCNGG 3 cut(s) 128, 965, 1124
BmgBI CACGTC 1 cut(s) 89
BmgT120I GGNCC 3 cut(s) 76, 124, 162
BmiI GGNNCC 2 cut(s) 575, 1056
BmrFI CCNGG 3 cut(s) 128, 965, 1124
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 49, 180, 1030
BmuI ACTGGG 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 612
Bpu10I CCTNAGC 2 cut(s) 33, 438
Bpu1102I GCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 2 cut(s) 801, 892
BpuEI CTTGAG 1 cut(s) 1216
BpuMI CCSGG 1 cut(s) 1124
BsaAI YACGTR 1 cut(s) 397
BsaI GGTCTC 1 cut(s) 1326
BsaJI CCNNGG 2 cut(s) 127, 787
BsaWI WCCGGW 2 cut(s) 523, 1232
BsaXI ACNNNNNCTCC 2 cut(s) 1138, 1168
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 583, 1064
Bse118I RCCGGY 1 cut(s) 1277
Bse1I ACTGG 6 cut(s) 79, 111, 190, 248, 429, 629
Bse3DI GCAATG 2 cut(s) 344, 975
BseBI CCWGG 2 cut(s) 128, 965
BseDI CCNNGG 2 cut(s) 127, 787
BseGI GGATG 5 cut(s) 40, 171, 300, 1021, 1396
BseLI CCNNNNNNNGG 3 cut(s) 500, 583, 1064
BseMI GCAATG 2 cut(s) 344, 975
BseMII CTCAG 2 cut(s) 452, 784
BseNI ACTGG 6 cut(s) 79, 111, 190, 248, 429, 629
BseSI GKGCMC 2 cut(s) 86, 1376
BseXI GCAGC 6 cut(s) 24, 66, 69, 180, 439, 663
BsgI GTGCAG 1 cut(s) 73
BshFI GGCC 5 cut(s) 78, 126, 163, 587, 1068
BsiHKAI GWGCWC 1 cut(s) 1354
BsiSI CCGG 4 cut(s) 524, 1123, 1233, 1278
BslI CCNNNNNNNGG 3 cut(s) 500, 583, 1064
BsmAI GTCTC 3 cut(s) 900, 1042, 1326
BsmBI CGTCTC 2 cut(s) 900, 1042
BsmI GAATGC 1 cut(s) 1088
BsnI GGCC 5 cut(s) 78, 126, 163, 587, 1068
Bso31I GGTCTC 1 cut(s) 1326
Bsp119I TTCGAA 2 cut(s) 801, 892
Bsp1286I GDGCHC 3 cut(s) 86, 1354, 1376
Bsp1407I TGTACA 1 cut(s) 1378
Bsp143I GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 4 cut(s) 47, 588, 729, 885
BspANI GGCC 5 cut(s) 78, 126, 163, 587, 1068
BspCNI CTCAG 2 cut(s) 451, 783
BspLI GGNNCC 2 cut(s) 575, 1056
BspMAI CTGCAG 1 cut(s) 170
BspPI GGATC 2 cut(s) 512, 926
BspQI GCTCTTC 1 cut(s) 894
BspT104I TTCGAA 2 cut(s) 801, 892
BspTI CTTAAG 2 cut(s) 115, 473
BspTNI GGTCTC 1 cut(s) 1326
BsrBI CCGCTC 1 cut(s) 887
BsrDI GCAATG 2 cut(s) 344, 975
BsrFI RCCGGY 1 cut(s) 1277
BsrGI TGTACA 1 cut(s) 1378
BsrI ACTGG 6 cut(s) 79, 111, 190, 248, 429, 629
BssAI RCCGGY 1 cut(s) 1277
BssECI CCNNGG 2 cut(s) 127, 787
BssMI GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
BssT1I CCWWGG 1 cut(s) 787
Bst2UI CCWGG 2 cut(s) 128, 965
Bst4CI ACNGT 4 cut(s) 265, 925, 1216, 1378
Bst6I CTCTTC 1 cut(s) 894
BstAFI CTTAAG 2 cut(s) 115, 473
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstAUI TGTACA 1 cut(s) 1378
BstBAI YACGTR 1 cut(s) 397
BstBI TTCGAA 2 cut(s) 801, 892
BstC8I GCNNGC 2 cut(s) 402, 1279
BstDEI CTNAG 5 cut(s) 33, 405, 438, 770, 877
BstEII GGTNACC 1 cut(s) 1210
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 5 cut(s) 40, 171, 300, 1021, 1396
BstKTI GATC 7 cut(s) 279, 315, 520, 610, 864, 921, 1138
BstMAI GTCTC 3 cut(s) 900, 1042, 1326
BstMBI GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
BstMWI GCNNNNNNNGC 5 cut(s) 37, 46, 406, 434, 1094
BstNI CCWGG 2 cut(s) 128, 965
BstNSI RCATGY 2 cut(s) 404, 424
BstPI GGTNACC 1 cut(s) 1210
BstSCI CCNGG 3 cut(s) 126, 963, 1122
BstSFI CTRYAG 1 cut(s) 166
BstSLI GKGCMC 2 cut(s) 86, 1376
BstV1I GCAGC 6 cut(s) 24, 66, 69, 180, 439, 663
BsuI GTATCC 2 cut(s) 330, 769
BsuRI GGCC 5 cut(s) 78, 126, 163, 587, 1068
BtrI CACGTC 1 cut(s) 89
BtsCI GGATG 5 cut(s) 40, 171, 300, 1021, 1396
BtsI GCAGTG 2 cut(s) 1207, 1434
BtsIMutI CAGTG 7 cut(s) 8, 86, 760, 1099, 1207, 1374, 1434
Cac8I GCNNGC 2 cut(s) 402, 1279
Cfr10I RCCGGY 1 cut(s) 1277
Cfr13I GGNCC 3 cut(s) 76, 124, 162
CseI GACGC 1 cut(s) 643
Csp6I GTAC 3 cut(s) 247, 881, 1379
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 8 cut(s) 24, 352, 401, 421, 541, 694, 733, 1028
CviQI GTAC 3 cut(s) 247, 881, 1379
DdeI CTNAG 5 cut(s) 33, 405, 438, 770, 877
DpnI GATC 7 cut(s) 278, 314, 519, 609, 863, 920, 1137
DpnII GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
Eam1104I CTCTTC 1 cut(s) 894
EarI CTCTTC 1 cut(s) 894
EciI GGCGGA 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 787
Eco31I GGTCTC 1 cut(s) 1326
Eco32I GATATC 2 cut(s) 1270, 1361
Eco57I CTGAAG 2 cut(s) 632, 693
Eco91I GGTNACC 1 cut(s) 1210
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 1210
EcoRI GAATTC 1 cut(s) 1112
EcoRII CCWGG 2 cut(s) 126, 963
EcoRV GATATC 2 cut(s) 1270, 1361
EcoT14I CCWWGG 1 cut(s) 787
ErhI CCWWGG 1 cut(s) 787
Esp3I CGTCTC 2 cut(s) 900, 1042
FaeI CATG 8 cut(s) 27, 355, 404, 424, 544, 697, 736, 1031
FatI CATG 8 cut(s) 23, 351, 400, 420, 540, 693, 732, 1027
FauI CCCGC 1 cut(s) 892
FbaI TGATCA 1 cut(s) 276
FblI GTMKAC 2 cut(s) 297, 1335
Fnu4HI GCNGC 7 cut(s) 38, 55, 58, 169, 453, 588, 652
FokI GGATG 5 cut(s) 27, 158, 287, 1008, 1403
Fsp4HI GCNGC 7 cut(s) 38, 55, 58, 169, 453, 588, 652
FspBI CTAG 1 cut(s) 1421
GluI GCNGC 7 cut(s) 38, 55, 58, 169, 453, 588, 652
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 5 cut(s) 78, 126, 163, 587, 1068
HapII CCGG 4 cut(s) 524, 1123, 1233, 1278
HgaI GACGC 1 cut(s) 643
Hin1II CATG 8 cut(s) 27, 355, 404, 424, 544, 697, 736, 1031
HincII GTYRAC 3 cut(s) 187, 634, 1260
HindII GTYRAC 3 cut(s) 187, 634, 1260
HindIII AAGCTT 2 cut(s) 232, 476
HinfI GANTC 3 cut(s) 225, 936, 942
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 4 cut(s) 524, 1123, 1233, 1278
HphI GGTGA 4 cut(s) 538, 550, 718, 1204
Hpy166II GTNNAC 8 cut(s) 187, 298, 601, 634, 818, 1260, 1336, 1381
Hpy188I TCNGA 6 cut(s) 93, 612, 773, 795, 941, 1326
Hpy188III TCNNGA 6 cut(s) 482, 577, 859, 946, 1133, 1144
Hpy8I GTNNAC 8 cut(s) 187, 298, 601, 634, 818, 1260, 1336, 1381
Hpy99I CGWCG 1 cut(s) 1359
HpyAV CCTTC 3 cut(s) 206, 523, 905
HpyCH4III ACNGT 4 cut(s) 265, 925, 1216, 1378
HpyCH4IV ACGT 2 cut(s) 88, 396
HpyCH4V TGCA 9 cut(s) 40, 54, 168, 400, 544, 651, 1021, 1160, 1181
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 46, 406, 434, 1094
HpyF3I CTNAG 5 cut(s) 33, 405, 438, 770, 877
HpySE526I ACGT 2 cut(s) 88, 396
Hsp92II CATG 8 cut(s) 27, 355, 404, 424, 544, 697, 736, 1031
KroI GCCGGC 1 cut(s) 1277
KroNI GCCGGC 1 cut(s) 1279
Ksp22I TGATCA 1 cut(s) 276
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 3 cut(s) 555, 1060, 1417
Lsp1109I GCAGC 6 cut(s) 24, 66, 69, 180, 439, 663
LweI GCATC 3 cut(s) 49, 180, 1030
MaeI CTAG 1 cut(s) 1421
MaeII ACGT 2 cut(s) 88, 396
MaeIII GTNAC 5 cut(s) 735, 898, 1190, 1210, 1228
MalI GATC 7 cut(s) 278, 314, 519, 609, 863, 920, 1137
MbiI CCGCTC 1 cut(s) 887
MboI GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
MboII GAAGA 5 cut(s) 229, 680, 881, 1014, 1108
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 3 cut(s) 86, 1354, 1376
MluCI AATT 8 cut(s) 71, 156, 363, 509, 796, 1016, 1112, 1327
MmeI TCCRAC 1 cut(s) 682
MnlI CCTC 9 cut(s) 54, 146, 531, 564, 636, 779, 1078, 1313, 1381
MroNI GCCGGC 1 cut(s) 1277
MseI TTAA 6 cut(s) 116, 474, 633, 675, 776, 1410
MslI CAYNNNNRTG 3 cut(s) 266, 731, 1026
MspA1I CMGCKG 3 cut(s) 67, 318, 812
MspCI CTTAAG 2 cut(s) 115, 473
MspI CCGG 4 cut(s) 524, 1123, 1233, 1278
MspR9I CCNGG 3 cut(s) 128, 965, 1124
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 1088
MvaI CCWGG 2 cut(s) 128, 965
MwoI GCNNNNNNNGC 5 cut(s) 37, 46, 406, 434, 1094
NaeI GCCGGC 1 cut(s) 1279
NciI CCSGG 1 cut(s) 1124
NdeII GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
NgoMIV GCCGGC 1 cut(s) 1277
NlaIII CATG 8 cut(s) 27, 355, 404, 424, 544, 697, 736, 1031
NlaIV GGNNCC 2 cut(s) 575, 1056
NmuCI GTSAC 3 cut(s) 735, 1210, 1228
NspI RCATGY 2 cut(s) 404, 424
NspV TTCGAA 2 cut(s) 801, 892
OliI CACNNNNGTG 1 cut(s) 266
PaeI GCATGC 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 894
PctI GAATGC 1 cut(s) 1088
PdiI GCCGGC 1 cut(s) 1279
PfeI GAWTC 3 cut(s) 225, 936, 942
PflMI CCANNNNNTGG 1 cut(s) 1064
PkrI GCNGC 7 cut(s) 39, 56, 59, 170, 454, 589, 653
Ppu21I YACGTR 1 cut(s) 397
PsiI TTATAA 1 cut(s) 1368
Psp6I CCWGG 2 cut(s) 126, 963
PspEI GGTNACC 1 cut(s) 1210
PspGI CCWGG 2 cut(s) 126, 963
PspN4I GGNNCC 2 cut(s) 575, 1056
PspPI GGNCC 3 cut(s) 76, 124, 162
PstI CTGCAG 1 cut(s) 170
PvuII CAGCTG 3 cut(s) 67, 318, 812
RsaI GTAC 3 cut(s) 248, 882, 1380
RsaNI GTAC 3 cut(s) 247, 881, 1379
RseI CAYNNNNRTG 3 cut(s) 266, 731, 1026
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 6 cut(s) 116, 474, 633, 675, 776, 1410
SatI GCNGC 7 cut(s) 38, 55, 58, 169, 453, 588, 652
Sau3AI GATC 7 cut(s) 276, 312, 517, 607, 861, 918, 1135
Sau96I GGNCC 3 cut(s) 76, 124, 162
ScrFI CCNGG 3 cut(s) 128, 965, 1124
SduI GDGCHC 3 cut(s) 86, 1354, 1376
SfaNI GCATC 3 cut(s) 49, 180, 1030
SfcI CTRYAG 1 cut(s) 166
SfuI TTCGAA 2 cut(s) 801, 892
SmiMI CAYNNNNRTG 3 cut(s) 266, 731, 1026
SmlI CTYRAG 3 cut(s) 115, 473, 1195
SmoI CTYRAG 3 cut(s) 115, 473, 1195
SphI GCATGC 1 cut(s) 404
Sse9I AATT 8 cut(s) 71, 156, 363, 509, 796, 1016, 1112, 1327
SsiI CCGC 4 cut(s) 47, 588, 729, 885
SspI AATATT 1 cut(s) 852
SspMI CTAG 1 cut(s) 1421
StyD4I CCNGG 3 cut(s) 126, 963, 1122
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 4 cut(s) 265, 925, 1216, 1378
TaiI ACGT 2 cut(s) 91, 399
TaqI TCGA 3 cut(s) 801, 892, 1354
TasI AATT 8 cut(s) 71, 156, 363, 509, 796, 1016, 1112, 1327
TatI WGTACW 1 cut(s) 1378
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 3 cut(s) 225, 936, 942
Tru1I TTAA 6 cut(s) 116, 474, 633, 675, 776, 1410
Tru9I TTAA 6 cut(s) 116, 474, 633, 675, 776, 1410
TscAI CASTG 7 cut(s) 15, 86, 760, 1099, 1207, 1381, 1441
TseFI GTSAC 3 cut(s) 735, 1210, 1228
TseI GCWGC 6 cut(s) 37, 54, 57, 168, 452, 651
Tsp45I GTSAC 3 cut(s) 735, 1210, 1228
TspDTI ATGAA 4 cut(s) 976, 1033, 1044, 1211
TspRI CASTG 7 cut(s) 15, 86, 760, 1099, 1207, 1381, 1441
Van91I CCANNNNNTGG 1 cut(s) 1064
Vha464I CTTAAG 2 cut(s) 115, 473
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 3 cut(s) 796, 1112, 1327
XceI RCATGY 2 cut(s) 404, 424
XcmI CCANNNNNNNNNTGG 2 cut(s) 636, 1105
XmiI GTMKAC 2 cut(s) 297, 1335
XspI CTAG 1 cut(s) 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.