MD13G1089100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012894
Physical Location & Seq
Forward (+)
6250615 .. 6250881
267 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1089100.v1.1.491

Sequence Viewer

Length: 267 bp
ATGAATAATTTTCATGGCCTGAGAGGTTATTCTTCGCCATCTAAGATGAAGACGATGAAGATGAGGAGGCGGAGGCAGGCGGTGGGAGGTCGTGGTGGAGGAGGCAGGTCGATGGTGCAAGTGAAGGTGAAGAAGCTGCAAATGTTGATTCCAGGAGGGAGAAGGTTGAAGGCGGACCGGCTTTTTCTTCAAACCGCGGATTATATACTTCAGCTGAGGTTGCAACTTAATGTTTTGCAAGCGCTTTCCAAGATTTACAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.06

Weight (kDa)

11.94

Isoelectric Point (pI)

74.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AccII CGCG 1 cut(s) 197
AciI CCGC 5 cut(s) 70, 80, 173, 195, 197
AcuI CTGAAG 1 cut(s) 194
AfeI AGCGCT 1 cut(s) 243
AgsI TTSAA 2 cut(s) 169, 191
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 136, 214, 262
AluI AGCT 3 cut(s) 136, 214, 262
Aor51HI AGCGCT 1 cut(s) 243
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 123
BccI CCATC 2 cut(s) 46, 106
BciT130I CCWGG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 177
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 11, 206
BseRI GAGGAG 2 cut(s) 79, 114
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 178
BsnI GGCC 1 cut(s) 18
BspACI CCGC 5 cut(s) 70, 80, 173, 195, 197
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 2 cut(s) 12, 207
BspFNI CGCG 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 78, 240
BstDEI CTNAG 3 cut(s) 20, 42, 215
BstDSI CCRYGG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 56
BsuRI GGCC 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 78, 240
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 175
Cfr42I CCGCGG 1 cut(s) 198
CpoI CGGWCCG 1 cut(s) 175
CspI CGGWCCG 1 cut(s) 175
CviAII CATG 1 cut(s) 14
CviJI RGCY 5 cut(s) 18, 136, 181, 214, 262
CviKI_1 RGCY 5 cut(s) 18, 136, 181, 214, 262
DdeI CTNAG 3 cut(s) 20, 42, 215
EciI GGCGGA 2 cut(s) 85, 188
Eco47I GGWCC 1 cut(s) 175
Eco47III AGCGCT 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 204, 206, 265
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
GlaI GCGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 118, 156, 163
HpyCH4V TGCA 4 cut(s) 118, 139, 223, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 3 cut(s) 20, 42, 215
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 1 cut(s) 242
KspI CCGCGG 1 cut(s) 198
LpnPI CCDG 6 cut(s) 32, 62, 91, 138, 165, 191
Lsp1109I GCAGC 1 cut(s) 123
MboII GAAGA 5 cut(s) 24, 61, 70, 142, 179
MluCI AATT 1 cut(s) 7
MnlI CCTC 9 cut(s) 17, 57, 60, 66, 80, 92, 95, 149, 210
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 2 cut(s) 197, 214
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 17
PfeI GAWTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 214
Rsr2I CGGWCCG 1 cut(s) 175
RsrII CGGWCCG 1 cut(s) 175
SacII CCGCGG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 153
SetI ASST 9 cut(s) 28, 91, 110, 129, 138, 167, 216, 221, 264
Sfr303I CCGCGG 1 cut(s) 198
SgrBI CCGCGG 1 cut(s) 198
SinI GGWCC 1 cut(s) 175
Sse9I AATT 1 cut(s) 7
SsiI CCGC 5 cut(s) 70, 80, 173, 195, 197
StyD4I CCNGG 1 cut(s) 151
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 7
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 17, 62, 71
VpaK11BI GGWCC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.