pycom13g07750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012894
Physical Location & Seq
Forward (+)
5124701 .. 5125196
496 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07750.1

Sequence Viewer

Length: 402 bp
ATGAATTGCTCGGCTCACATGGCCCCGTCGTCCTATTTAGTGTTGCCTTCATTTATAGAGCATAGCCTTCAGCCCTCTCCCATCATTCATCATCCCTCTCAATTCTGGTATCAGACTTTCAACGAATCATTCTTTCTCTGGGTTTCTTTGGCAATTTTTGTGTTGCCTTTGCCTTTGTACAGGAAGACGATGAAGATGAGGAGGCGGAGGCAGGCGGTGGGAGGTCGTGGCAGAGGAGGCATGTCGATGGTGCAAGTGAAGGTGAAGAAGCTACAAATGTTGATTCCAGGAGGGAGAGGGTTGAAGGCGGACCGGCTTTTTCTTCAAACCGCGGATTATATACTTCAGCTGAGGTTGCAACTTAATGTTTTGCAAGCGCTTTCCAAGATTTACAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.35

Weight (kDa)

10.84

Isoelectric Point (pI)

65.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 332
AciI CCGC 5 cut(s) 205, 215, 308, 330, 332
AcuI CTGAAG 2 cut(s) 53, 329
AfaI GTAC 1 cut(s) 179
AfeI AGCGCT 1 cut(s) 378
AgsI TTSAA 3 cut(s) 121, 304, 326
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 3 cut(s) 271, 349, 397
AluI AGCT 3 cut(s) 271, 349, 397
Aor51HI AGCGCT 1 cut(s) 378
AoxI GGCC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 22, 310
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 350
BccI CCATC 2 cut(s) 89, 241
BciT130I CCWGG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 22, 310
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 312
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 214, 249
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 177
BspACI CCGC 5 cut(s) 205, 215, 308, 330, 332
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 342
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 213, 375
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstMWI GCNNNNNNNGC 3 cut(s) 20, 237, 355
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 213, 375
CfoI GCGC 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 22, 310
Cfr42I CCGCGG 1 cut(s) 333
CpoI CGGWCCG 1 cut(s) 310
Csp6I GTAC 1 cut(s) 178
CspI CGGWCCG 1 cut(s) 310
CviAII CATG 2 cut(s) 19, 241
CviJI RGCY 8 cut(s) 14, 23, 66, 73, 271, 316, 349, 397
CviKI_1 RGCY 8 cut(s) 14, 23, 66, 73, 271, 316, 349, 397
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 350
EciI GGCGGA 2 cut(s) 220, 323
Eco47I GGWCC 1 cut(s) 310
Eco47III AGCGCT 1 cut(s) 378
Eco57I CTGAAG 2 cut(s) 53, 329
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 22, 244
FaiI YATR 7 cut(s) 20, 56, 63, 242, 339, 341, 400
FatI CATG 2 cut(s) 18, 240
FokI GGATG 1 cut(s) 78
GlaI GCGC 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 313
HhaI GCGC 1 cut(s) 379
Hin1II CATG 2 cut(s) 22, 244
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 2 cut(s) 125, 283
HpaII CCGG 1 cut(s) 313
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 4 cut(s) 57, 77, 253, 298
HpyCH4V TGCA 3 cut(s) 253, 358, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 237, 355
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 2 cut(s) 22, 244
HspAI GCGC 1 cut(s) 377
KspI CCGCGG 1 cut(s) 333
LpnPI CCDG 7 cut(s) 91, 124, 166, 197, 273, 300, 326
MboII GAAGA 4 cut(s) 196, 205, 277, 314
MluCI AATT 3 cut(s) 4, 101, 153
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 245
MspA1I CMGCKG 2 cut(s) 332, 349
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 20, 237, 355
NlaIII CATG 2 cut(s) 22, 244
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 244
PfeI GAWTC 2 cut(s) 125, 283
PfoI TCCNGGA 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 22, 310
PvuII CAGCTG 1 cut(s) 349
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 245
Rsr2I CGGWCCG 1 cut(s) 310
RsrII CGGWCCG 1 cut(s) 310
SacII CCGCGG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 363
Sau96I GGNCC 2 cut(s) 22, 310
ScrFI CCNGG 1 cut(s) 288
SetI ASST 6 cut(s) 226, 264, 273, 351, 356, 399
Sfr303I CCGCGG 1 cut(s) 333
SgrBI CCGCGG 1 cut(s) 333
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 3 cut(s) 4, 101, 153
SsiI CCGC 5 cut(s) 205, 215, 308, 330, 332
StyD4I CCNGG 1 cut(s) 286
TaqI TCGA 1 cut(s) 245
TasI AATT 3 cut(s) 4, 101, 153
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 2 cut(s) 125, 283
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TspDTI ATGAA 4 cut(s) 17, 39, 77, 206
VpaK11BI GGWCC 1 cut(s) 310
XceI RCATGY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.