Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0017089

Physical Location & Seq

Genomic Coordinates Forward (+)

20819562 .. 20822970

Gene Structure 3409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1217400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCTGAAATAGTCAGCGAGGCTTGGAGAAAATATCTCATACAGCTTCAATCCCACCCTCTCAGAACTAAGGCAATTACATCAGGAGTTTTAGCTGGGTGCAGTGATGCAATAGCCCAGAAGATTTCTGGGATCAAAAAGCTTCAACTGAGAAGACTGCTTCTTATAATGCTGTATGGTTTCGCATATGCGGGACCATTTGGGCACTTCCTCCACAAATTGATGGATGTAATATTTAAGGGAAAGAAGGACAACAAAACGATCGCAAAGAAGGTTTTGGTGGAACAATTAACTTCGTCTCCTTGGAACAACATGGTTTTCATGACGTACTATGGCTTGGTTATTGAAGGAAGACCATGGAATTTAGTCAGGAGCAAAGTTCGAAAGGACTATCCTTCTATCCAATTGACCGCATGGAAGTTTTGGCCTATTGTTGGTTGGGTGAATTACCAATATATGCCTCTGCAGTTTCGTGTCTTGTTTCACAGCTTTGTTGCCTCATGCTGGGCAATCTTTCTTAATCTGAAGGCTAGATCGGCGGTAATCAAGCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

186

Amino Acids

21.37

Weight (kDa)

10.18

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpv17_PMP22	PF04117	114 - 174	3e-20	Mpv17 / PMP22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14305
fragaria_vesca	FvH4_4g04080
malus_domestica	MD13G1217400.v1.1
prunus_persica	Prupe.1G044000_v2.0.a1
pyrus_communis	pycom13g19080
rosa_chinensis	RchiOBHm_Chr4g0394471
rosa_laevigata	RLG00000009696
rosa_multiflora	Rmu_sc0001582.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339490
rosa_rugosa	Rorug03G0365900.1
rosa_samantha	Rh4AG052200
rosa_wichuraiana	Rw0G003390 Rw4G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AciI	CCGC	3 cut(s)	191, 411, 539
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	434, 504
AgsI	TTSAA	3 cut(s)	50, 146, 347
AluBI	AGCT	4 cut(s)	46, 95, 142, 489
AluI	AGCT	4 cut(s)	46, 95, 142, 489
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	454
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	160, 358
BccI	CCATC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	2 cut(s)	160, 358
Bpu14I	TTCGAA	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	302, 356
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 504
BseDI	CCNNGG	2 cut(s)	302, 356
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	434, 504
BseMII	CTCAG	2 cut(s)	76, 140
BseSI	GKGCMC	1 cut(s)	207
BseYI	CCCAGC	2 cut(s)	95, 504
BsgI	GTGCAG	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	434, 504
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	132, 261, 533
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	3 cut(s)	191, 411, 539
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	75, 141
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	302, 356
BssMI	GATC	3 cut(s)	132, 261, 533
BssT1I	CCWWGG	2 cut(s)	302, 356
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	62, 69, 149
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	3 cut(s)	135, 264, 536
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	3 cut(s)	132, 261, 533
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstSFI	CTRYAG	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	207
BstV2I	GAAGAC	2 cut(s)	160, 358
BsuRI	GGCC	1 cut(s)	427
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	5 cut(s)	313, 322, 357, 414, 501
CviJI	RGCY	9 cut(s)	23, 46, 95, 116, 142, 336, 427, 489, 530
CviKI_1	RGCY	9 cut(s)	23, 46, 95, 116, 142, 336, 427, 489, 530
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	62, 69, 149
DpnI	GATC	3 cut(s)	134, 263, 535
DpnII	GATC	3 cut(s)	132, 261, 533
Eco130I	CCWWGG	2 cut(s)	302, 356
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	302, 356
ErhI	CCWWGG	2 cut(s)	302, 356
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	5 cut(s)	316, 325, 360, 417, 504
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	5 cut(s)	312, 321, 356, 413, 500
FauI	CCCGC	1 cut(s)	184
FauNDI	CATATG	1 cut(s)	187
FokI	GGATG	1 cut(s)	239
FspBI	CTAG	1 cut(s)	531
GsaI	CCCAGC	2 cut(s)	99, 508
HaeIII	GGCC	1 cut(s)	427
Hin1II	CATG	5 cut(s)	316, 325, 360, 417, 504
HindIII	AAGCTT	1 cut(s)	140
HphI	GGTGA	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	7, 65, 525
Hpy188III	TCNNGA	3 cut(s)	84, 322, 370
HpyAV	CCTTC	5 cut(s)	241, 265, 341, 405, 520
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	102, 110, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	3 cut(s)	62, 69, 149
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	5 cut(s)	316, 325, 360, 417, 504
Kzo9I	GATC	3 cut(s)	132, 261, 533
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	7 cut(s)	69, 81, 114, 131, 355, 490, 536
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	326
MalI	GATC	3 cut(s)	134, 263, 535
MboI	GATC	3 cut(s)	132, 261, 533
MboII	GAAGA	3 cut(s)	133, 165, 363
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	6 cut(s)	75, 218, 287, 361, 404, 445
MnlI	CCTC	5 cut(s)	13, 69, 221, 471, 508
MseI	TTAA	3 cut(s)	237, 290, 519
MunI	CAATTG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	536
NcoI	CCATGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	3 cut(s)	132, 261, 533
NlaIII	CATG	5 cut(s)	316, 325, 360, 417, 504
NlaIV	GGNNCC	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	382
PagI	TCATGA	1 cut(s)	321
Ple19I	CGATCG	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	167
PspFI	CCCAGC	2 cut(s)	95, 504
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	468
PvuI	CGATCG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	237, 290, 519
Sau3AI	GATC	3 cut(s)	132, 261, 533
Sau96I	GGNCC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	6 cut(s)	48, 97, 144, 276, 329, 491
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	464
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	6 cut(s)	75, 218, 287, 361, 404, 445
SsiI	CCGC	3 cut(s)	191, 411, 539
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	1 cut(s)	531
StyI	CCWWGG	2 cut(s)	302, 356
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	382
TasI	AATT	6 cut(s)	75, 218, 287, 361, 404, 445
Tru1I	TTAA	3 cut(s)	237, 290, 519
Tru9I	TTAA	3 cut(s)	237, 290, 519
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.