Rh4AG052200

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017089
Physical Location & Seq
Forward (+)
10992632 .. 10994920
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG052200.1

Sequence Viewer

Length: 558 bp
ATGTCTGAGATAGTCAACGAGGCTTGGAGAAAATACCGTATACAACTTCAGTCCTACCCTCTCAGGACCAAGGCAATTACAGCAGGAGTTTTGATTGGGGTTAGTGATGGAATAGCCCAGAAGATCTCTGGGATCAAGAAGCTTCAACTCAGAAGATTGTTTCTTATGATGCTCTATGGGTTTGCGTATACGGGGCCATTTGGGCACTTCCTCCACAAATTGATGGATATAATATTCAAGGGAAAGAAGGACAACAAAACTGTTGCAAAGAAGGTTCTGCTGGAACAGTTAACTTCATCTCCTTGGAACAACCTGTTTTTCATGCTGTACTATGGCTTGGTGGTTGAAGGAAGACCATGGAGTTTAGTTAAGACAAAAGTTCGAAAGGACTACCCTTCTGTTCAGTTGACTGCATGGAAGTTTTGGCCTATTGTTGGTTGGGTGAACTACCAGTATATGCCTTTGCAGTTCCGGGTTTTGTTTCACAGCTTCATTGGTTCATGCTGGGCAATTTTCCTTAATCTGAAGGCTAGATCAGTGGTGATAAAGCAGGCGTAG

Protein Analysis

185

Amino Acids

21.57

Weight (kDa)

10.22

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 114 - 174 1.7e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14305
fragaria_vesca FvH4_4g04080
malus_domestica MD13G1217400.v1.1
prunus_persica Prupe.1G044000_v2.0.a1
pyrus_communis pycom13g19080
rosa_chinensis RchiOBHm_Chr4g0394471
rosa_laevigata RLG00000009696
rosa_multiflora Rmu_sc0001582.1_g000001
rosa_roxburghii Rroxscaffold_5G00339490
rosa_rugosa Rorug03G0365900.1
rosa_samantha Rh4AG052200
rosa_wichuraiana Rw0G003390 Rw4G004210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 40, 188
AclWI GGATC 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 32, 545
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 3 cut(s) 146, 238, 347
AluBI AGCT 2 cut(s) 142, 489
AluI AGCT 2 cut(s) 142, 489
AlwI GGATC 1 cut(s) 140
AoxI GGCC 2 cut(s) 194, 425
AspS9I GGNCC 2 cut(s) 66, 194
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 454, 553
AsuII TTCGAA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 358
BccI CCATC 2 cut(s) 101, 217
BcnI CCSGG 1 cut(s) 473
BfaI CTAG 1 cut(s) 531
BglI GCCNNNNNGGC 1 cut(s) 202
BglII AGATCT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 66, 194
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 358
Bpu14I TTCGAA 1 cut(s) 382
BpuMI CCSGG 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 69, 302, 356
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 69, 302, 356
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 76, 163
BseNI ACTGG 1 cut(s) 451
BseSI GKGCMC 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 504
BshFI GGCC 2 cut(s) 196, 427
BsiSI CCGG 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 434
BsnI GGCC 2 cut(s) 196, 427
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 123, 132, 533
Bsp19I CCATGG 1 cut(s) 356
BspANI GGCC 2 cut(s) 196, 427
BspCNI CTCAG 2 cut(s) 75, 162
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 69, 302, 356
BssMI GATC 3 cut(s) 123, 132, 533
BssNAI GTATAC 2 cut(s) 41, 189
BssT1I CCWWGG 3 cut(s) 69, 302, 356
Bst1107I GTATAC 2 cut(s) 41, 189
Bst4CI ACNGT 3 cut(s) 38, 262, 288
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 3 cut(s) 6, 62, 149
BstDSI CCRYGG 1 cut(s) 356
BstKTI GATC 3 cut(s) 126, 135, 536
BstMBI GATC 3 cut(s) 123, 132, 533
BstMWI GCNNNNNNNGC 2 cut(s) 80, 202
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 2 cut(s) 41, 189
BsuRI GGCC 2 cut(s) 196, 427
BtgI CCRYGG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 552
Cfr13I GGNCC 2 cut(s) 66, 194
Csp6I GTAC 1 cut(s) 328
CviAII CATG 4 cut(s) 322, 357, 414, 501
CviJI RGCY 8 cut(s) 23, 116, 142, 196, 336, 427, 489, 530
CviKI_1 RGCY 8 cut(s) 23, 116, 142, 196, 336, 427, 489, 530
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 6, 62, 149
DpnI GATC 3 cut(s) 125, 134, 535
DpnII GATC 3 cut(s) 123, 132, 533
Eco130I CCWWGG 3 cut(s) 69, 302, 356
Eco47I GGWCC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 32, 545
EcoT14I CCWWGG 3 cut(s) 69, 302, 356
ErhI CCWWGG 3 cut(s) 69, 302, 356
FaeI CATG 4 cut(s) 325, 360, 417, 504
FatI CATG 4 cut(s) 321, 356, 413, 500
FblI GTMKAC 2 cut(s) 40, 188
FspBI CTAG 1 cut(s) 531
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 2 cut(s) 196, 427
HapII CCGG 1 cut(s) 472
Hin1II CATG 4 cut(s) 325, 360, 417, 504
HincII GTYRAC 3 cut(s) 16, 291, 408
HindII GTYRAC 3 cut(s) 16, 291, 408
HindIII AAGCTT 1 cut(s) 140
HpaI GTTAAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 472
HphI GGTGA 2 cut(s) 454, 553
Hpy166II GTNNAC 6 cut(s) 16, 41, 189, 291, 408, 445
Hpy188I TCNGA 3 cut(s) 7, 152, 525
Hpy188III TCNNGA 2 cut(s) 64, 136
Hpy8I GTNNAC 6 cut(s) 16, 41, 189, 291, 408, 445
HpyAV CCTTC 5 cut(s) 241, 265, 341, 405, 520
HpyCH4III ACNGT 3 cut(s) 38, 262, 288
HpyCH4V TGCA 3 cut(s) 266, 413, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 202
HpyF3I CTNAG 3 cut(s) 6, 62, 149
Hsp92II CATG 4 cut(s) 325, 360, 417, 504
KspAI GTTAAC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 123, 132, 533
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 531
MalI GATC 3 cut(s) 125, 134, 535
MboI GATC 3 cut(s) 123, 132, 533
MboII GAAGA 3 cut(s) 133, 165, 363
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 75, 218, 510
MnlI CCTC 3 cut(s) 13, 69, 221
MseI TTAA 3 cut(s) 290, 369, 519
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 80, 202
NciI CCSGG 1 cut(s) 473
NcoI CCATGG 1 cut(s) 356
NdeII GATC 3 cut(s) 123, 132, 533
NlaIII CATG 4 cut(s) 325, 360, 417, 504
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 504
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 2 cut(s) 66, 194
PsuI RGATCY 1 cut(s) 123
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 3 cut(s) 290, 369, 519
Sau3AI GATC 3 cut(s) 123, 132, 533
Sau96I GGNCC 2 cut(s) 66, 194
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 144, 276, 315, 491
SfaNI GCATC 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 382
SinI GGWCC 1 cut(s) 66
Sse9I AATT 3 cut(s) 75, 218, 510
SspI AATATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 3 cut(s) 69, 302, 356
TaaI ACNGT 3 cut(s) 38, 262, 288
TaqI TCGA 1 cut(s) 382
TasI AATT 3 cut(s) 75, 218, 510
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 3 cut(s) 290, 369, 519
Tru9I TTAA 3 cut(s) 290, 369, 519
TscAI CASTG 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 285, 310, 481, 489
TspRI CASTG 1 cut(s) 543
VpaK11BI GGWCC 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 40, 188
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.