Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001582.1

Orthogroup ID

OG0017089

Physical Location & Seq

Genomic Coordinates Reverse (-)

1196 .. 3484

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001582.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgtctgagatagtcaacgaggcttggagaaaataccgtatacaacttcagtcctaccctctcaggaccaaggcaattacagcaggagttttgattggggttagtgatggaatagcccagaagatctctgggatcaagaagcttcaactcagaagattgtttcttatgatgctctatgggtttgcgtatacggggccatttgggcacttcctccacaaattgatggatataatattcaagggaaagaaggacaacaaaactgttgcaaagaaggttctgctggaacagttaacttcatctccttggaacaacctgtttttcatgctgtactatggcttggtggttgaaggaagaccatggagtttagttaagacgaaagttcgaaaggactacccttctgttcagttgactgcatggaagttttggcctattgttggttgggtgaactaccagtatatgcctttgcagttccgggttttgtttcacagcttcattggttcatgctgggcaattttccttaatctgaaggctagatcagtggtgataaagcaggcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

185

Amino Acids

21.57

Weight (kDa)

10.22

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14305
fragaria_vesca	FvH4_4g04080
malus_domestica	MD13G1217400.v1.1
prunus_persica	Prupe.1G044000_v2.0.a1
pyrus_communis	pycom13g19080
rosa_chinensis	RchiOBHm_Chr4g0394471
rosa_laevigata	RLG00000009696
rosa_multiflora	Rmu_sc0001582.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339490
rosa_rugosa	Rorug03G0365900.1
rosa_samantha	Rh4AG052200
rosa_wichuraiana	Rw0G003390 Rw4G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	40, 188
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	32, 545
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	146, 238, 347
AluBI	AGCT	2 cut(s)	142, 489
AluI	AGCT	2 cut(s)	142, 489
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	194, 425
AspS9I	GGNCC	2 cut(s)	66, 194
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	454, 553
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	358
BccI	CCATC	2 cut(s)	101, 217
BcnI	CCSGG	1 cut(s)	473
BfaI	CTAG	1 cut(s)	531
BglI	GCCNNNNNGGC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	2 cut(s)	66, 194
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	69, 302, 356
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	69, 302, 356
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	76, 163
BseNI	ACTGG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	504
BshFI	GGCC	2 cut(s)	196, 427
BsiSI	CCGG	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	434
BsnI	GGCC	2 cut(s)	196, 427
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	123, 132, 533
Bsp19I	CCATGG	1 cut(s)	356
BspANI	GGCC	2 cut(s)	196, 427
BspCNI	CTCAG	2 cut(s)	75, 162
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	69, 302, 356
BssMI	GATC	3 cut(s)	123, 132, 533
BssNAI	GTATAC	2 cut(s)	41, 189
BssT1I	CCWWGG	3 cut(s)	69, 302, 356
Bst1107I	GTATAC	2 cut(s)	41, 189
Bst4CI	ACNGT	3 cut(s)	38, 262, 288
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	6, 62, 149
BstDSI	CCRYGG	1 cut(s)	356
BstKTI	GATC	3 cut(s)	126, 135, 536
BstMBI	GATC	3 cut(s)	123, 132, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 202
BstSCI	CCNGG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BstZ17I	GTATAC	2 cut(s)	41, 189
BsuRI	GGCC	2 cut(s)	196, 427
BtgI	CCRYGG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	66, 194
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	322, 357, 414, 501
CviJI	RGCY	8 cut(s)	23, 116, 142, 196, 336, 427, 489, 530
CviKI_1	RGCY	8 cut(s)	23, 116, 142, 196, 336, 427, 489, 530
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	6, 62, 149
DpnI	GATC	3 cut(s)	125, 134, 535
DpnII	GATC	3 cut(s)	123, 132, 533
Eco130I	CCWWGG	3 cut(s)	69, 302, 356
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	32, 545
EcoT14I	CCWWGG	3 cut(s)	69, 302, 356
ErhI	CCWWGG	3 cut(s)	69, 302, 356
FaeI	CATG	4 cut(s)	325, 360, 417, 504
FatI	CATG	4 cut(s)	321, 356, 413, 500
FblI	GTMKAC	2 cut(s)	40, 188
FspBI	CTAG	1 cut(s)	531
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	196, 427
HapII	CCGG	1 cut(s)	472
Hin1II	CATG	4 cut(s)	325, 360, 417, 504
HincII	GTYRAC	3 cut(s)	16, 291, 408
HindII	GTYRAC	3 cut(s)	16, 291, 408
HindIII	AAGCTT	1 cut(s)	140
HpaI	GTTAAC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	2 cut(s)	454, 553
Hpy166II	GTNNAC	6 cut(s)	16, 41, 189, 291, 408, 445
Hpy188I	TCNGA	3 cut(s)	7, 152, 525
Hpy188III	TCNNGA	2 cut(s)	64, 136
Hpy8I	GTNNAC	6 cut(s)	16, 41, 189, 291, 408, 445
HpyAV	CCTTC	5 cut(s)	241, 265, 341, 405, 520
HpyCH4III	ACNGT	3 cut(s)	38, 262, 288
HpyCH4V	TGCA	3 cut(s)	266, 413, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 202
HpyF3I	CTNAG	3 cut(s)	6, 62, 149
Hsp92II	CATG	4 cut(s)	325, 360, 417, 504
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	123, 132, 533
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	531
MalI	GATC	3 cut(s)	125, 134, 535
MboI	GATC	3 cut(s)	123, 132, 533
MboII	GAAGA	3 cut(s)	133, 165, 363
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	3 cut(s)	75, 218, 510
MnlI	CCTC	3 cut(s)	13, 69, 221
MseI	TTAA	3 cut(s)	290, 369, 519
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	80, 202
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	3 cut(s)	123, 132, 533
NlaIII	CATG	4 cut(s)	325, 360, 417, 504
NlaIV	GGNNCC	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	66, 194
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	290, 369, 519
Sau3AI	GATC	3 cut(s)	123, 132, 533
Sau96I	GGNCC	2 cut(s)	66, 194
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	4 cut(s)	144, 276, 315, 491
SfaNI	GCATC	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	3 cut(s)	75, 218, 510
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	3 cut(s)	69, 302, 356
TaaI	ACNGT	3 cut(s)	38, 262, 288
TaqI	TCGA	1 cut(s)	382
TasI	AATT	3 cut(s)	75, 218, 510
TatI	WGTACW	1 cut(s)	327
Tru1I	TTAA	3 cut(s)	290, 369, 519
Tru9I	TTAA	3 cut(s)	290, 369, 519
TscAI	CASTG	1 cut(s)	543
TspDTI	ATGAA	4 cut(s)	285, 310, 481, 489
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	40, 188
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.