MD14G1003200.v1.1

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
405900 .. 410064
4165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1003200.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGAGGGAGATAATAAGCATACACATCGGACAGGCAGGGATCCAAGTTGGGAATGCGTGCTGGGAGCTCTACTGCCTTGAACATGGCATTCAGCCCGATGGTATGATGCCCAGTGACACCTCTGTCGGCGCTGCAACCGATTCTTTTAACACCTTCTTCAGCGAAACTGGTTCTGGAAATCATGTGCCCAGAGCCATATTTGTTGATCTTGAACCGACGGTTATTGATGAAGTCAGGACTGGGACTTACAGACAACTTTTTCATCCCGAGCAACTTATTTCTGGCAAAGAAGATGCTGCAAACAATTTTGCCCGAGGACACTACACAGTGGGGAAGGACATTGTGGACCTATGCCTTGACAGGGTAAGAAAATTAGCCGATAATTGCACTGGCCTGCAAGGGTTTTTGGTATTTAATGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCCTTACTTCTCGAACGATTGTCTGTTGATTATGGAAAGAAGTCAAAGCTCGGTTTCACGATTTATCCTTCTCCTCAGGTCTCCACTGCTGTGGTAGAACCTTATAATAGCGTGCTTTCCACGCATTCTCTCCTTGAACATACAGACGTGGCTGTGCTTCTGGACAATGAAGCCATTTATGATATCTGTAGGAGATCTTTAGACATTGAAAGGCCAACGTACACCAACTTGAATCGTTTAATATCCCAAACGATATCTTCTTTGACAACTTCGTTGAGGTTTGACGGTGCCATTAATGTGGACATTACGGAGTTTCAAACTAATCTGGTTCCATATCCTCGTATCCACTTTATGCTCTCATCTTATGCCCCTGTAATCTCCGCTGCAAAGGCCTACCATGAGCAACTGTCAGTTCCTGAGATCACAAGTTCTGTATTTGAGCCCTCAAGTATGATGGCCAAGTGTGATCCTAGGCATGGGAAGTACATGGCATGCTGCTTGATGTACCGTGGTGATGTTGTACCGAAGGATGTAAATGCTGCTGTAGCTACCATTAAGACAAAGAGGACAGTTCAGTTTGTGGACTGGTGCCCAACTGGTTTCAAATGTGGTATTAACTACCAGCCCCCGACAGTTGTACCAGGTGGTGATCTTGCCAAGGTGCAACGTGCAGTTTGTATGATAAGCAACAACACTGCAGTAGCTGAGGTCTTCTCCCGAATTGACCATAAATTTGACCTTATGTATTCCAAGCGGGCATTTGTGCATTGGTATGTAGGTGAAGGGATGGAGGAAGGTGAATTCTCAGAAGCCCGTGAGGATCTTGCTGCTCTTGAAAAAGACTACGAGGAAGTTGGGGCAGAAGGCGCTGATGATGAAGAGGAAGGGGAAGATTACTGA

Protein Analysis

450

Amino Acids

49.5

Weight (kDa)

4.9

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 213 1.3e-62 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 263 - 392 8.6e-52 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64740
malus_domestica MD12G1004700.v1.1 MD14G1003200.v1.1
prunus_persica Prupe.7G005100_v2.0.a1
pyrus_communis pycom12g00380 pycom14g00110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 737, 1038
AciI CCGC 2 cut(s) 831, 1204
AclWI GGATC 4 cut(s) 34, 47, 911, 1278
AcoI YGGCCR 1 cut(s) 906
AcsI RAATTY 2 cut(s) 1181, 1250
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 5 cut(s) 671, 935, 956, 972, 1089
AfiI CCNNNNNNNGG 2 cut(s) 361, 926
AgsI TTSAA 8 cut(s) 80, 212, 587, 659, 682, 767, 1054, 1286
AjiI CACGTC 1 cut(s) 598
AjnI CCWGG 1 cut(s) 1090
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 4 cut(s) 67, 499, 998, 1154
AluI AGCT 4 cut(s) 67, 499, 998, 1154
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 4 cut(s) 34, 47, 911, 1278
AlwNI CAGNNNCTG 2 cut(s) 866, 1154
Ama87I CYCGRG 2 cut(s) 266, 312
AoxI GGCC 4 cut(s) 391, 662, 840, 906
ApeKI GCWGC 6 cut(s) 131, 296, 833, 945, 989, 1277
ApoI RAATTY 2 cut(s) 1181, 1250
ArsI GACNNNNNNTTYG 2 cut(s) 1166, 1198
AseI ATTAAT 1 cut(s) 744
AspA2I CCTAGG 1 cut(s) 920
AspLEI GCGC 2 cut(s) 131, 1319
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 4 cut(s) 974, 1109, 1241, 1259
AvaI CYCGRG 2 cut(s) 266, 312
AvaII GGWCC 1 cut(s) 346
AvrII CCTAGG 1 cut(s) 920
AxyI CCTNAGG 1 cut(s) 525
BaeGI GKGCMC 2 cut(s) 189, 1043
BaeI ACNNNNGTAYC 2 cut(s) 1071, 1104
BalI TGGCCA 1 cut(s) 908
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 2 cut(s) 737, 1038
BanII GRGCYC 2 cut(s) 69, 894
BbsI GAAGAC 1 cut(s) 1153
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 1155
BbvI GCAGC 6 cut(s) 118, 283, 820, 932, 976, 1264
BccI CCATC 3 cut(s) 92, 898, 1231
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 1092
BciVI GTATCC 1 cut(s) 803
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 1 cut(s) 921
BfmI CTRYAG 3 cut(s) 637, 993, 1146
BfoI RGCGCY 2 cut(s) 132, 1320
BfuI GTATCC 1 cut(s) 803
BglII AGATCT 1 cut(s) 644
BisI GCNGC 6 cut(s) 132, 297, 834, 946, 990, 1278
BlnI CCTAGG 1 cut(s) 920
BlsI GCNGC 6 cut(s) 133, 298, 835, 947, 991, 1279
Bme1390I CCNGG 1 cut(s) 1092
Bme18I GGWCC 1 cut(s) 346
BmeT110I CYCGRG 2 cut(s) 266, 312
BmgBI CACGTC 1 cut(s) 598
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 5 cut(s) 41, 451, 739, 780, 1040
BmrFI CCNGG 1 cut(s) 1092
BmrI ACTGGG 2 cut(s) 105, 249
BmsI GCATC 2 cut(s) 96, 283
BmuI ACTGGG 2 cut(s) 105, 249
BpiI GAAGAC 1 cut(s) 1153
BplI GAGNNNNNCTC 2 cut(s) 1148, 1180
Bpu10I CCTNAGC 1 cut(s) 1155
BpuEI CTTGAG 1 cut(s) 880
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 4 cut(s) 313, 920, 958, 1107
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 926
Bse1I ACTGG 7 cut(s) 111, 172, 244, 394, 439, 1040, 1051
Bse21I CCTNAGG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 4 cut(s) 313, 920, 958, 1107
BseGI GGATG 3 cut(s) 262, 985, 1242
BseLI CCNNNNNNNGG 2 cut(s) 361, 926
BseMII CTCAG 4 cut(s) 539, 858, 1146, 1269
BseNI ACTGG 7 cut(s) 111, 172, 244, 394, 439, 1040, 1051
BseRI GAGGAG 1 cut(s) 513
BseSI GKGCMC 2 cut(s) 189, 1043
BseXI GCAGC 6 cut(s) 118, 283, 820, 932, 976, 1264
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 1140
BshFI GGCC 4 cut(s) 393, 664, 842, 908
BshNI GGYRCC 2 cut(s) 737, 1038
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 2 cut(s) 266, 312
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 361, 926
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 3 cut(s) 58, 87, 574
BsnI GGCC 4 cut(s) 393, 664, 842, 908
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 2 cut(s) 266, 312
Bsp1286I GDGCHC 4 cut(s) 69, 189, 894, 1043
Bsp143I GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
BspACI CCGC 2 cut(s) 831, 1204
BspANI GGCC 4 cut(s) 393, 664, 842, 908
BspCNI CTCAG 4 cut(s) 538, 859, 1147, 1268
BspLI GGNNCC 5 cut(s) 41, 451, 739, 780, 1040
BspMAI CTGCAG 1 cut(s) 1150
BspPI GGATC 4 cut(s) 34, 47, 911, 1278
BspT107I GGYRCC 2 cut(s) 737, 1038
BspTNI GGTCTC 1 cut(s) 535
BsrI ACTGG 7 cut(s) 111, 172, 244, 394, 439, 1040, 1051
BssECI CCNNGG 4 cut(s) 313, 920, 958, 1107
BssMI GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
BssT1I CCWWGG 2 cut(s) 920, 1107
Bst2UI CCWGG 1 cut(s) 1092
Bst4CI ACNGT 7 cut(s) 220, 328, 737, 858, 959, 1021, 1084
Bst6I CTCTTC 1 cut(s) 1323
BstC8I GCNNGC 5 cut(s) 58, 395, 563, 943, 1206
BstDEI CTNAG 4 cut(s) 525, 867, 1155, 1255
BstDSI CCRYGG 1 cut(s) 958
BstF5I GGATG 3 cut(s) 262, 985, 1242
BstH2I RGCGCY 2 cut(s) 132, 1320
BstHHI GCGC 2 cut(s) 131, 1319
BstKTI GATC 7 cut(s) 42, 208, 647, 873, 919, 1102, 1273
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 571, 839, 995, 1316
BstNI CCWGG 1 cut(s) 1092
BstNSI RCATGY 1 cut(s) 945
BstSCI CCNGG 1 cut(s) 1090
BstSFI CTRYAG 3 cut(s) 637, 993, 1146
BstSLI GKGCMC 2 cut(s) 189, 1043
BstV1I GCAGC 6 cut(s) 118, 283, 820, 932, 976, 1264
BstV2I GAAGAC 1 cut(s) 1153
BstX2I RGATCY 3 cut(s) 39, 644, 1270
BstXI CCANNNNNNTGG 2 cut(s) 541, 748
BstYI RGATCY 3 cut(s) 39, 644, 1270
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 4 cut(s) 393, 664, 842, 908
BtgI CCRYGG 1 cut(s) 958
BtrI CACGTC 1 cut(s) 598
BtsCI GGATG 3 cut(s) 262, 985, 1242
BtsI GCAGTG 2 cut(s) 534, 1143
BtsIMutI CAGTG 6 cut(s) 118, 333, 387, 432, 534, 1143
Cac8I GCNNGC 5 cut(s) 58, 395, 563, 943, 1206
CaiI CAGNNNCTG 2 cut(s) 866, 1154
CfoI GCGC 2 cut(s) 131, 1319
Cfr13I GGNCC 1 cut(s) 346
CsiI ACCWGGT 1 cut(s) 1090
Csp6I GTAC 5 cut(s) 670, 934, 955, 971, 1088
CviAII CATG 6 cut(s) 83, 182, 848, 926, 937, 942
CviQI GTAC 5 cut(s) 670, 934, 955, 971, 1088
DdeI CTNAG 4 cut(s) 525, 867, 1155, 1255
DpnI GATC 7 cut(s) 41, 207, 646, 872, 918, 1101, 1272
DpnII GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 906
Eam1104I CTCTTC 1 cut(s) 1323
EarI CTCTTC 1 cut(s) 1323
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 920, 1107
Eco147I AGGCCT 1 cut(s) 842
Eco24I GRGCYC 2 cut(s) 69, 894
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 2 cut(s) 634, 705
Eco47I GGWCC 1 cut(s) 346
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 2 cut(s) 266, 312
EcoICRI GAGCTC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 1 cut(s) 1090
EcoRV GATATC 2 cut(s) 634, 705
EcoT14I CCWWGG 2 cut(s) 920, 1107
EcoT38I GRGCYC 2 cut(s) 69, 894
ErhI CCWWGG 2 cut(s) 920, 1107
FaeI CATG 6 cut(s) 86, 185, 851, 929, 940, 945
FaqI GGGAC 1 cut(s) 256
FatI CATG 6 cut(s) 82, 181, 847, 925, 936, 941
FauI CCCGC 1 cut(s) 1197
Fnu4HI GCNGC 6 cut(s) 132, 297, 834, 946, 990, 1278
FokI GGATG 3 cut(s) 249, 992, 1249
FriOI GRGCYC 2 cut(s) 69, 894
Fsp4HI GCNGC 6 cut(s) 132, 297, 834, 946, 990, 1278
FspBI CTAG 1 cut(s) 921
GlaI GCGC 2 cut(s) 130, 1318
GluI GCNGC 6 cut(s) 132, 297, 834, 946, 990, 1278
GsaI CCCAGC 1 cut(s) 64
HaeII RGCGCY 2 cut(s) 132, 1320
HaeIII GGCC 4 cut(s) 393, 664, 842, 908
HhaI GCGC 2 cut(s) 131, 1319
Hin1II CATG 6 cut(s) 86, 185, 851, 929, 940, 945
Hin6I GCGC 2 cut(s) 129, 1317
HinP1I GCGC 2 cut(s) 129, 1317
HinfI GANTC 2 cut(s) 140, 682
HphI GGTGA 4 cut(s) 974, 1109, 1241, 1259
Hpy166II GTNNAC 4 cut(s) 346, 672, 751, 1033
Hpy188I TCNGA 2 cut(s) 29, 1258
Hpy8I GTNNAC 4 cut(s) 346, 672, 751, 1033
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 8 cut(s) 163, 328, 528, 970, 1226, 1238, 1307, 1328
HpyCH4III ACNGT 7 cut(s) 220, 328, 737, 858, 959, 1021, 1084
HpyCH4IV ACGT 3 cut(s) 597, 668, 1117
HpyCH4V TGCA 9 cut(s) 134, 299, 387, 397, 836, 1114, 1121, 1148, 1216
HpyF10VI GCNNNNNNNGC 4 cut(s) 571, 839, 995, 1316
HpyF3I CTNAG 4 cut(s) 525, 867, 1155, 1255
HpySE526I ACGT 3 cut(s) 597, 668, 1117
Hsp92II CATG 6 cut(s) 86, 185, 851, 929, 940, 945
HspAI GCGC 2 cut(s) 129, 1317
Kzo9I GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 6 cut(s) 118, 283, 820, 932, 976, 1264
LweI GCATC 2 cut(s) 96, 283
MabI ACCWGGT 1 cut(s) 1090
MaeI CTAG 1 cut(s) 921
MaeII ACGT 3 cut(s) 597, 668, 1117
MaeIII GTNAC 1 cut(s) 113
MalI GATC 7 cut(s) 41, 207, 646, 872, 918, 1101, 1272
MboI GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
MboII GAAGA 5 cut(s) 148, 302, 699, 1153, 1340
MflI RGATCY 3 cut(s) 39, 644, 1270
MhlI GDGCHC 4 cut(s) 69, 189, 894, 1043
MlsI TGGCCA 1 cut(s) 908
MluCI AATT 6 cut(s) 304, 371, 382, 1170, 1181, 1250
MluNI TGGCCA 1 cut(s) 908
Mox20I TGGCCA 1 cut(s) 908
MscI TGGCCA 1 cut(s) 908
MseI TTAA 6 cut(s) 147, 414, 689, 744, 1005, 1065
MslI CAYNNNNRTG 3 cut(s) 539, 746, 1221
Msp20I TGGCCA 1 cut(s) 908
MspA1I CMGCKG 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 1092
Mva1269I GAATGC 3 cut(s) 58, 87, 574
MvaI CCWGG 1 cut(s) 1092
MwoI GCNNNNNNNGC 4 cut(s) 571, 839, 995, 1316
NdeII GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
NlaIII CATG 6 cut(s) 86, 185, 851, 929, 940, 945
NlaIV GGNNCC 5 cut(s) 41, 451, 739, 780, 1040
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 945
OliI CACNNNNGTG 1 cut(s) 539
PaeI GCATGC 1 cut(s) 945
PceI AGGCCT 1 cut(s) 842
PctI GAATGC 3 cut(s) 58, 87, 574
PfeI GAWTC 2 cut(s) 140, 682
PkrI GCNGC 6 cut(s) 133, 298, 835, 947, 991, 1279
PshBI ATTAAT 1 cut(s) 744
PsiI TTATAA 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 1090
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 5 cut(s) 41, 451, 739, 780, 1040
PspPI GGNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 1150
PstNI CAGNNNCTG 2 cut(s) 866, 1154
PsuI RGATCY 3 cut(s) 39, 644, 1270
RsaI GTAC 5 cut(s) 671, 935, 956, 972, 1089
RsaNI GTAC 5 cut(s) 670, 934, 955, 971, 1088
RseI CAYNNNNRTG 3 cut(s) 539, 746, 1221
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 6 cut(s) 147, 414, 689, 744, 1005, 1065
SatI GCNGC 6 cut(s) 132, 297, 834, 946, 990, 1278
Sau3AI GATC 7 cut(s) 39, 205, 644, 870, 916, 1099, 1270
Sau96I GGNCC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 1092
SduI GDGCHC 4 cut(s) 69, 189, 894, 1043
SexAI ACCWGGT 1 cut(s) 1090
SfaNI GCATC 2 cut(s) 96, 283
SfcI CTRYAG 3 cut(s) 637, 993, 1146
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 3 cut(s) 539, 746, 1221
SmlI CTYRAG 1 cut(s) 895
SmoI CTYRAG 1 cut(s) 895
SphI GCATGC 1 cut(s) 945
Sse9I AATT 6 cut(s) 304, 371, 382, 1170, 1181, 1250
SseBI AGGCCT 1 cut(s) 842
SsiI CCGC 2 cut(s) 831, 1204
SspMI CTAG 1 cut(s) 921
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 1 cut(s) 1090
StyI CCWWGG 2 cut(s) 920, 1107
TaaI ACNGT 7 cut(s) 220, 328, 737, 858, 959, 1021, 1084
TaiI ACGT 3 cut(s) 600, 671, 1120
TaqI TCGA 1 cut(s) 462
TasI AATT 6 cut(s) 304, 371, 382, 1170, 1181, 1250
TatI WGTACW 1 cut(s) 933
TfiI GAWTC 2 cut(s) 140, 682
Tru1I TTAA 6 cut(s) 147, 414, 689, 744, 1005, 1065
Tru9I TTAA 6 cut(s) 147, 414, 689, 744, 1005, 1065
TscAI CASTG 6 cut(s) 118, 333, 394, 439, 541, 1150
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 6 cut(s) 131, 296, 833, 945, 989, 1277
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 4 cut(s) 243, 251, 633, 1341
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 6 cut(s) 118, 333, 394, 439, 541, 1150
VpaK11BI GGWCC 1 cut(s) 346
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 2 cut(s) 1181, 1250
XceI RCATGY 1 cut(s) 945
XmaJI CCTAGG 1 cut(s) 920
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.