MD14G1042500.v1.1
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0022329
Physical Location & Seq
Forward (+)
4042540 .. 4042857
318 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1042500.v1.1.491

Sequence Viewer

Length: 318 bp
ATGTCAGACATCAGACGTAGCACTCTTACCCTCACAAAGCAGAAACCTAAACCTAGAAAGATTGAAATCAAGAAAATAGAGAATTCAGGCTCACTATATGTCACGTTTTCGAAGCAGAAAGTTGGACTTTTCAGGAAGGCCTCCACGCTCAGTGCTCTGTATGGCGCTGAGGTAGCCGTCATTATCTTCTCCCCCCATGGCAAGACGTATGTCTTCGGCCACTCTTCGGTGGATTCTGTCCTCTCTCGCCTTGAAAGTACAGACACTCCCTTACATGGCTGCCAACAAAATGTGTCTATGCATGCAAGGGTCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04013 ko04022 ko04111 ko04371 ko05418 map04011 map04013 map04022 map04111 map04371 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

10.07

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 25 - 72 4.9e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022329)

Species Orthologous Gene IDs
malus_domestica MD12G1043500.v1.1 MD12G1043700.v1.1 MD14G1042500.v1.1
prunus_persica Prupe.7G091400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 2 cut(s) 226, 275
AgsI TTSAA 2 cut(s) 65, 254
Alw21I GWGCWC 1 cut(s) 157
AoxI GGCC 2 cut(s) 138, 217
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 1 cut(s) 82
AspLEI GCGC 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 161
BfaI CTAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BoxI GACNNNNGTC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 275
Bse8I GATNNNNATC 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 226, 275
BseMII CTCAG 2 cut(s) 159, 163
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 2 cut(s) 140, 219
BsiHKAI GWGCWC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 226, 275
BsnI GGCC 2 cut(s) 140, 219
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 196
BspANI GGCC 2 cut(s) 140, 219
BspCNI CTCAG 2 cut(s) 160, 162
BspT104I TTCGAA 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 149, 168
BstDSI CCRYGG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 305
BstPAI GACNNNNGTC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 140, 219
BtgI CCRYGG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 258
CviAII CATG 3 cut(s) 197, 275, 302
CviJI RGCY 5 cut(s) 90, 140, 176, 219, 279
CviKI_1 RGCY 5 cut(s) 90, 140, 176, 219, 279
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 2 cut(s) 149, 168
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 3 cut(s) 200, 278, 305
FaiI YATR 9 cut(s) 97, 99, 162, 198, 210, 276, 299, 303, 316
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 3 cut(s) 196, 274, 301
Fnu4HI GCNGC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 2 cut(s) 140, 219
HhaI GCGC 1 cut(s) 167
Hin1II CATG 3 cut(s) 200, 278, 305
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 7, 14
Hpy188III TCNNGA 2 cut(s) 70, 133
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 3 cut(s) 16, 104, 206
HpyCH4V TGCA 2 cut(s) 301, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 149, 168
HpySE526I ACGT 3 cut(s) 16, 104, 206
Hsp92II CATG 3 cut(s) 200, 278, 305
HspAI GCGC 1 cut(s) 165
LpnPI CCDG 2 cut(s) 72, 118
Lsp1109I GCAGC 1 cut(s) 266
MaeI CTAG 1 cut(s) 54
MaeII ACGT 3 cut(s) 16, 104, 206
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 3 cut(s) 178, 205, 216
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 4 cut(s) 41, 151, 163, 251
Mph1103I ATGCAT 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 173
NcoI CCATGG 1 cut(s) 196
NlaIII CATG 3 cut(s) 200, 278, 305
NmuCI GTSAC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 1 cut(s) 305
NspV TTCGAA 1 cut(s) 110
PaeI GCATGC 1 cut(s) 305
PceI AGGCCT 1 cut(s) 140
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 209
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SatI GCNGC 1 cut(s) 280
SduI GDGCHC 1 cut(s) 157
SetI ASST 6 cut(s) 19, 49, 55, 107, 174, 209
SfuI TTCGAA 1 cut(s) 110
SphI GCATGC 1 cut(s) 305
Sse9I AATT 1 cut(s) 82
SseBI AGGCCT 1 cut(s) 140
SspMI CTAG 1 cut(s) 54
StuI AGGCCT 1 cut(s) 140
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 3 cut(s) 19, 107, 209
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 279
Tsp45I GTSAC 1 cut(s) 100
TspRI CASTG 1 cut(s) 157
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 305
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.