Prupe.7G091400_v2.0.a1
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0022329
Physical Location & Seq
Reverse (-)
12449057 .. 12449704
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G091400.1

Sequence Viewer

Length: 648 bp
ATGTCAGACGATTCTAGTAGCACTGTTACAAAACAAAAAAGCACCATGGGCCGCAAAAAGATTGATATCAAGAAAATACAGAAAACAAGCTCCCTCCAGGTCACGTTTTCCAAGCGAAGAAACGGCCTTTTCAGGAAGGCCAGCCAACTCGGTGCCCTCTGCGGCGCTGAGGTGGCCATCCTAGTCTTTTCTCCCCACGGCAGGCCGTTTGTCTTCGGCCACCCCTCCGTGGACTCCGTCATCTCCCGCCTTGCAAGCACAAGCACCAACGCTGAGTGCATGCATACTAGTGGTGATGACGAGGACACGCATAGCAGTATAGTCCAGTCCAATCCTTCCCACTCTGGTACAACGCACCAAACAAGTCCAGATAAAGAAAGCCTCTCCTTGCGATTGCGAATTGGTGGCGGCGGAAGCATGGGACTAGTGAAGGAGGAGACACAGGAGGTGGCGGAGGCGTGGAGCGGAGGCTGTGGGTTTTGGTGGGACAAGCCGACTGAGAAGATGAAATTGCGTGAACTCAAGCAGTTCAAGACATCCCTAGAAGATCTGAGGGCTAAGGTGGGCATGCAGTTGGATGACATGTCGAGGCGTAAATTGGCTGCGAGGGATTTTCTGGGTGTAAATCGTAATGGCAGCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

216

Amino Acids

23.49

Weight (kDa)

9.46

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022329)

Species Orthologous Gene IDs
malus_domestica MD12G1043500.v1.1 MD12G1043700.v1.1 MD14G1042500.v1.1
prunus_persica Prupe.7G091400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 465
AciI CCGC 7 cut(s) 52, 162, 247, 408, 411, 452, 465
AcoI YGGCCR 2 cut(s) 174, 217
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 2 cut(s) 201, 229
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 1 cut(s) 532
AhlI ACTAGT 2 cut(s) 287, 424
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 90, 639
AluI AGCT 2 cut(s) 90, 639
Alw26I GTCTC 1 cut(s) 431
AoxI GGCC 6 cut(s) 49, 124, 138, 174, 203, 217
ApeKI GCWGC 2 cut(s) 602, 636
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 589
BccI CCATC 1 cut(s) 185
BceAI ACGGC 3 cut(s) 139, 190, 214
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 431
BcuI ACTAGT 2 cut(s) 287, 424
BfaI CTAG 5 cut(s) 15, 182, 288, 425, 542
BfoI RGCGCY 1 cut(s) 168
BglII AGATCT 1 cut(s) 547
BisI GCNGC 5 cut(s) 52, 163, 409, 603, 637
BlsI GCNGC 5 cut(s) 53, 164, 410, 604, 638
Bme1390I CCNGG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 2 cut(s) 168, 558
BpuEI CTTGAG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 45, 196, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 229
Bse1I ACTGG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 45, 196, 228
BseGI GGATG 3 cut(s) 177, 536, 583
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 201, 229
BseMII CTCAG 4 cut(s) 159, 264, 489, 542
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 589
BshFI GGCC 6 cut(s) 51, 126, 140, 176, 205, 219
BshNI GGYRCC 1 cut(s) 152
BslFI GGGAC 2 cut(s) 435, 500
BslI CCNNNNNNNGG 2 cut(s) 201, 229
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 2 cut(s) 435, 500
BsnI GGCC 6 cut(s) 51, 126, 140, 176, 205, 219
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 547
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 7 cut(s) 52, 162, 247, 408, 411, 452, 465
BspANI GGCC 6 cut(s) 51, 126, 140, 176, 205, 219
BspCNI CTCAG 4 cut(s) 160, 265, 490, 543
BspLI GGNNCC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 465
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 45, 196, 228
BssMI GATC 1 cut(s) 547
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 5 cut(s) 142, 203, 256, 281, 569
BstDEI CTNAG 5 cut(s) 168, 273, 498, 551, 558
BstDSI CCRYGG 3 cut(s) 45, 196, 228
BstF5I GGATG 3 cut(s) 177, 536, 583
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 550
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 4 cut(s) 48, 173, 255, 414
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 3 cut(s) 283, 571, 586
BstSCI CCNGG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 6 cut(s) 51, 126, 140, 176, 205, 219
BtgI CCRYGG 3 cut(s) 45, 196, 228
BtsCI GGATG 3 cut(s) 177, 536, 583
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 5 cut(s) 142, 203, 256, 281, 569
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 348
CviAII CATG 5 cut(s) 46, 280, 418, 568, 583
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 5 cut(s) 168, 273, 498, 551, 558
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
EaeI YGGCCR 2 cut(s) 174, 217
EciI GGCGGA 2 cut(s) 426, 467
Eco130I CCWWGG 1 cut(s) 45
Eco32I GATATC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 96
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 49, 283, 421, 571, 586
FaiI YATR 8 cut(s) 47, 281, 285, 312, 320, 419, 569, 584
FaqI GGGAC 2 cut(s) 435, 500
FatI CATG 5 cut(s) 45, 279, 417, 567, 582
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 5 cut(s) 52, 163, 409, 603, 637
FokI GGATG 3 cut(s) 164, 523, 590
Fsp4HI GCNGC 5 cut(s) 52, 163, 409, 603, 637
FspBI CTAG 5 cut(s) 15, 182, 288, 425, 542
GlaI GCGC 1 cut(s) 166
GluI GCNGC 5 cut(s) 52, 163, 409, 603, 637
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 6 cut(s) 51, 126, 140, 176, 205, 219
HhaI GCGC 1 cut(s) 167
Hin1II CATG 5 cut(s) 49, 283, 421, 571, 586
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 2 cut(s) 11, 233
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 232, 518
Hpy188I TCNGA 2 cut(s) 7, 552
Hpy188III TCNNGA 4 cut(s) 70, 133, 368, 532
Hpy8I GTNNAC 2 cut(s) 232, 518
HpyAV CCTTC 3 cut(s) 130, 345, 424
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 254, 279, 283, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 173, 255, 414
HpyF3I CTNAG 5 cut(s) 168, 273, 498, 551, 558
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 5 cut(s) 49, 283, 421, 571, 586
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 547
LmnI GCTCC 2 cut(s) 95, 462
Lsp1109I GCAGC 1 cut(s) 589
MaeI CTAG 5 cut(s) 15, 182, 288, 425, 542
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 25, 100
MalI GATC 1 cut(s) 549
MbiI CCGCTC 1 cut(s) 465
MboI GATC 1 cut(s) 547
MboII GAAGA 4 cut(s) 129, 205, 514, 557
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 157
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 3 cut(s) 399, 509, 596
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 555
Mox20I TGGCCA 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 285
MscI TGGCCA 1 cut(s) 176
MseI TTAA 1 cut(s) 646
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 639
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 48, 173, 255, 414
NcoI CCATGG 1 cut(s) 45
NdeII GATC 1 cut(s) 547
NlaIII CATG 5 cut(s) 49, 283, 421, 571, 586
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 3 cut(s) 283, 571, 586
PaeI GCATGC 2 cut(s) 283, 571
PciI ACATGT 1 cut(s) 582
PfeI GAWTC 1 cut(s) 11
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 5 cut(s) 53, 164, 410, 604, 638
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 547
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 639
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 646
SatI GCNGC 5 cut(s) 52, 163, 409, 603, 637
Sau3AI GATC 1 cut(s) 547
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 157
SetI ASST 7 cut(s) 92, 102, 107, 174, 450, 564, 641
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
SpeI ACTAGT 2 cut(s) 287, 424
SphI GCATGC 2 cut(s) 283, 571
Sse9I AATT 3 cut(s) 399, 509, 596
SsiI CCGC 7 cut(s) 52, 162, 247, 408, 411, 452, 465
SspMI CTAG 5 cut(s) 15, 182, 288, 425, 542
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 587
TasI AATT 3 cut(s) 399, 509, 596
TauI GCSGC 3 cut(s) 54, 165, 411
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 646
Tru9I TTAA 1 cut(s) 646
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 602, 636
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 521
TspGWI ACGGA 2 cut(s) 217, 226
TspRI CASTG 1 cut(s) 28
Tth111I GACNNNGTC 1 cut(s) 236
XceI RCATGY 3 cut(s) 283, 571, 586
XspI CTAG 5 cut(s) 15, 182, 288, 425, 542
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.