Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0021136

Physical Location & Seq

Genomic Coordinates Reverse (-)

4791030 .. 4796188

Gene Structure 5159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1049800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGCATTCTTTGAAACATCTTGGAATTATGTATCAGTCACGACGAGTCATCATACTCAAACCAAACGTGTGGAAAAGATCGAAGATCTTAATCCTAACATGGTGGTTCAGGGTTATGTGAAAAATGTCACGCCAAAAGGCTGTTTTATTTTGCTTTCGCGGAAGCTTGATGCAAAAATTCTCGTCTCCAATTTATCCGATGGATATGTTCAAGATCTCGAAAAGCAATTCCCAGCTGGAAAACTTGTAACTGGCAGGGTGTCATCTGTGGAGCCTTTATCGAAGCGAGTTGAAGTCACCTTAAAGTCATTGAACGCAAGCAGTGTGCCCCAATTTGGAAGTAATAATTTGGATAGCTTGCATGTTGGAGATATAATCTCTGGCAGGGTAAAAAGGATGGAGTCATATGGTTTATTCATCACGATTGACAACACAAACATGGTAATGGATGAGTCACATCTAGGGATGGGCAACGGTTATGGCGGGCGGGTTGGACTATGCCATATGTCTGAGCTTTCAGAAGATAAAGTTGACAATATTGAAACTAAATACGAAACAGGAGAGAGGGTGACAGCAAAAGTATTGAAGGTGGACAAAGAGAGGCATCGAGTTTCTCTTGGGATGAATGATGTTTATACCATGGCCAATAATGACCTTGAGACACCCTCAGAACAAGATCCTGATGAAACCATTGTGAAGAATGGTTTTATAGATGTTACTATGGAGCACGAAATAAGGTCTGCCGAGGAAAGACTATTGGCAAATGATATACCGAGAACTAATGAGGAATATGAGAAACTTGTGAGGACTTCTCCAAATAGCAGTTTTGTCTGGATAAAATATATGGAATTTGTGCTCTCTACAACTAATGTTGAGAAGGCACGTTCAATTGCTGAAAGGGCTTTGGCAACAATAAAGTTGGATAAAGAGACAGAGAAGGAGAAGCTCAATGTTTGGGTGGCTTATTTTAATTTGGAAAACAAATACGGAAGTCCTCCAGAGGAAGCTGTAAGGAAAGTATTTCAAAGAGCGGTACAGTGTAATGACTCCAGAATGGTTCATTTAGCACTTTTAGGACTCTATGAAAGGACTGAGCAACACAGGTTGGCTGAGGAGCTACTAAATAAAATGACAAAGAAGTTCAAGACATCCTGCAAGGATGGGATTCAGGATGTTATCAGTCGTGCTGAGAAAGTCCTTCCTAAGCATAAGCTTATCAAATTCAATTCCCAGACAGCCATCCTTGAGTTTAAATGTGGAGAACCCGAGCGAGGGCGATCTATGTTTGAGAATATTTTGCGGAATAACCCTAAGAGAACAGACTTGTGGAGCGTCTATCTTGATCAAGAAATTCGACTTGGAAATAGCGATCTGATTCATGCACTATTTGAGAGAGCAACTAGTTTGAGCCTCCCAGCAAAAAAGATGAAGTTCTTATTCAAAAAGTATCTGGCTTATGAGAAGTCTCGTGGTGATGAAGAGAAGATCGAGTCTGTGAAACGGAAGGCAATGGAGTATGTGGAGAATACAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0000462 GO:0000466 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1 Suf

Protein Analysis

513

Amino Acids

58.52

Weight (kDa)

7.63

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1_RRP5	PF23459	31 - 100	7e-08	RRP5 S1 domain
S1	PF00575	161 - 208	1.1e-09	S1 RNA binding domain
HAT_Syf1_CNRKL1_N	PF23233	252 - 348	5.6e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	254 - 347	1e-07	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	278 - 383	2.2e-07	PRP39 C-terminal HAT repeat
Suf	PF05843	411 - 509	2.1e-07	Suppressor of forked protein (Suf)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021136)

Species	Orthologous Gene IDs
malus_domestica	MD14G1049800.v1.1
prunus_persica	Prupe.7G085700_v2.0.a1
pyrus_communis	pycom14g04120
rosa_laevigata	RLG00000023636
rosa_multiflora	Rmu_sc0005420.1_g000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1031
AccII	CGCG	1 cut(s)	160
AciI	CCGC	5 cut(s)	160, 483, 487, 1031, 1300
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	4 cut(s)	177, 848, 1220, 1350
AfaI	GTAC	1 cut(s)	1035
AfiI	CCNNNNNNNGG	3 cut(s)	335, 1271, 1272
AflIII	ACRYGT	1 cut(s)	67
AhlI	ACTAGT	1 cut(s)	1400
AjuI	GAANNNNNNNTTGG	2 cut(s)	1341, 1373
AluBI	AGCT	9 cut(s)	166, 236, 357, 514, 946, 1007, 1117, 1213, 1535
AluI	AGCT	9 cut(s)	166, 236, 357, 514, 946, 1007, 1117, 1213, 1535
Alw21I	GWGCWC	2 cut(s)	729, 858
Alw26I	GTCTC	4 cut(s)	190, 653, 923, 1470
AlwI	GGATC	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	1265
AoxI	GGCC	1 cut(s)	642
ApoI	RAATTY	4 cut(s)	177, 848, 1220, 1350
AsuHPI	GGTGA	3 cut(s)	289, 580, 1484
AvaI	CYCGRG	1 cut(s)	1265
BaeGI	GKGCMC	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	644
BauI	CACGAG	1 cut(s)	1467
Bbv12I	GWGCWC	2 cut(s)	729, 858
BbvCI	CCTCAGC	1 cut(s)	1110
BccI	CCATC	5 cut(s)	194, 391, 460, 1154, 1247
BclI	TGATCA	1 cut(s)	1342
BcoDI	GTCTC	4 cut(s)	190, 653, 923, 1470
BcuI	ACTAGT	1 cut(s)	1400
BfaI	CTAG	2 cut(s)	461, 1401
BglII	AGATCT	2 cut(s)	85, 214
BmeT110I	CYCGRG	1 cut(s)	1265
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	2 cut(s)	160, 613
BplI	GAGNNNNNCTC	4 cut(s)	650, 682, 796, 828
BpmI	CTGGAG	2 cut(s)	981, 1033
Bpu10I	CCTNAGC	2 cut(s)	1110, 1203
BpuEI	CTTGAG	2 cut(s)	677, 1265
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	639, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 1271, 1272
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	1515
Bse8I	GATNNNNATC	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	639, 744
BseGI	GGATG	8 cut(s)	402, 454, 471, 627, 1148, 1165, 1177, 1239
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	335, 1271, 1272
BseMI	GCAATG	1 cut(s)	1515
BseMII	CTCAG	5 cut(s)	501, 681, 1083, 1101, 1179
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	1127
BseSI	GKGCMC	1 cut(s)	330
BseYI	CCCAGC	2 cut(s)	232, 1414
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	644
BsiHKAI	GWGCWC	2 cut(s)	729, 858
BsiHKCI	CYCGRG	1 cut(s)	1265
BslI	CCNNNNNNNGG	3 cut(s)	335, 1271, 1272
BsmAI	GTCTC	4 cut(s)	190, 653, 923, 1470
BsmBI	CGTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	1265
Bsp1286I	GDGCHC	3 cut(s)	330, 729, 858
Bsp143I	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	5 cut(s)	160, 483, 487, 1031, 1300
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	5 cut(s)	502, 680, 1084, 1102, 1180
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	1031
BsrDI	GCAATG	1 cut(s)	1515
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	639, 744
BssMI	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
BssSI	CACGAG	1 cut(s)	1467
BssT1I	CCWWGG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	1467
Bst4CI	ACNGT	3 cut(s)	476, 1038, 1531
Bst6I	CTCTTC	1 cut(s)	1473
BstC8I	GCNNGC	3 cut(s)	319, 359, 485
BstDEI	CTNAG	7 cut(s)	510, 667, 1092, 1110, 1188, 1203, 1311
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	8 cut(s)	402, 454, 471, 627, 1148, 1165, 1177, 1239
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	8 cut(s)	81, 88, 217, 679, 1280, 1345, 1372, 1488
BstMAI	GTCTC	4 cut(s)	190, 653, 923, 1470
BstMBI	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
BstMWI	GCNNNNNNNGC	1 cut(s)	899
BstNSI	RCATGY	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	160
BstX2I	RGATCY	3 cut(s)	85, 214, 676
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	3 cut(s)	85, 214, 676
BsuRI	GGCC	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	8 cut(s)	402, 454, 471, 627, 1148, 1165, 1177, 1239
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	328, 1043
Cac8I	GCNNGC	3 cut(s)	319, 359, 485
CseI	GACGC	1 cut(s)	1321
Csp6I	GTAC	1 cut(s)	1034
CviAII	CATG	5 cut(s)	100, 362, 439, 640, 1379
CviQI	GTAC	1 cut(s)	1034
DdeI	CTNAG	7 cut(s)	510, 667, 1092, 1110, 1188, 1203, 1311
DpnI	GATC	8 cut(s)	80, 87, 216, 678, 1279, 1344, 1371, 1487
DpnII	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
DraI	TTTAAA	1 cut(s)	1252
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	1 cut(s)	1473
EarI	CTCTTC	1 cut(s)	1473
Eco130I	CCWWGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	1265
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	5 cut(s)	103, 365, 442, 643, 1382
FatI	CATG	5 cut(s)	99, 361, 438, 639, 1378
FauI	CCCGC	2 cut(s)	476, 480
FauNDI	CATATG	2 cut(s)	406, 504
FbaI	TGATCA	1 cut(s)	1342
FokI	GGATG	8 cut(s)	409, 461, 478, 634, 1135, 1172, 1184, 1226
FspBI	CTAG	2 cut(s)	461, 1401
GsaI	CCCAGC	2 cut(s)	236, 1418
GsuI	CTGGAG	2 cut(s)	981, 1033
HaeIII	GGCC	1 cut(s)	644
HgaI	GACGC	1 cut(s)	1321
Hin1II	CATG	5 cut(s)	103, 365, 442, 643, 1382
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	2 cut(s)	164, 1211
HinfI	GANTC	8 cut(s)	46, 401, 452, 1046, 1077, 1165, 1375, 1490
HphI	GGTGA	3 cut(s)	289, 580, 1484
Hpy166II	GTNNAC	2 cut(s)	532, 592
Hpy188I	TCNGA	5 cut(s)	199, 511, 520, 670, 1374
Hpy8I	GTNNAC	2 cut(s)	532, 592
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	5 cut(s)	580, 871, 931, 1208, 1498
HpyCH4III	ACNGT	3 cut(s)	476, 1038, 1531
HpyCH4IV	ACGT	2 cut(s)	67, 883
HpyCH4V	TGCA	4 cut(s)	173, 361, 1155, 1382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	899
HpyF3I	CTNAG	7 cut(s)	510, 667, 1092, 1110, 1188, 1203, 1311
HpySE526I	ACGT	2 cut(s)	67, 883
Hsp92II	CATG	5 cut(s)	103, 365, 442, 643, 1382
Ksp22I	TGATCA	1 cut(s)	1342
Kzo9I	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
LmnI	GCTCC	4 cut(s)	271, 724, 1114, 1329
LweI	GCATC	2 cut(s)	160, 613
MaeI	CTAG	2 cut(s)	461, 1401
MaeII	ACGT	2 cut(s)	67, 883
MaeIII	GTNAC	7 cut(s)	37, 127, 247, 295, 453, 568, 715
MalI	GATC	8 cut(s)	80, 87, 216, 678, 1279, 1344, 1371, 1487
MbiI	CCGCTC	1 cut(s)	1031
MboI	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
MboII	GAAGA	5 cut(s)	95, 533, 709, 1490, 1495
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	3 cut(s)	85, 214, 676
MhlI	GDGCHC	3 cut(s)	330, 729, 858
MlsI	TGGCCA	1 cut(s)	644
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	6 cut(s)	55, 410, 461, 1040, 1071, 1499
MmeI	TCCRAC	3 cut(s)	346, 472, 900
Mox20I	TGGCCA	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	4 cut(s)	90, 302, 969, 1251
MslI	CAYNNNNRTG	2 cut(s)	437, 443
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	899
NcoI	CCATGG	1 cut(s)	639
NdeI	CATATG	2 cut(s)	406, 504
NdeII	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
NlaIII	CATG	5 cut(s)	103, 365, 442, 643, 1382
NlaIV	GGNNCC	1 cut(s)	273
NmeAIII	GCCGAG	1 cut(s)	769
NmuCI	GTSAC	5 cut(s)	37, 127, 295, 453, 568
NspI	RCATGY	1 cut(s)	365
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	1165, 1375
PleI	GAGTC	6 cut(s)	54, 409, 460, 1040, 1071, 1498
PpsI	GAGTC	6 cut(s)	54, 409, 460, 1040, 1071, 1498
PspFI	CCCAGC	2 cut(s)	232, 1414
PspN4I	GGNNCC	1 cut(s)	273
PsuI	RGATCY	3 cut(s)	85, 214, 676
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	1035
RsaNI	GTAC	1 cut(s)	1034
RseI	CAYNNNNRTG	2 cut(s)	437, 443
SaqAI	TTAA	4 cut(s)	90, 302, 969, 1251
Sau3AI	GATC	8 cut(s)	78, 85, 214, 676, 1277, 1342, 1369, 1485
SchI	GAGTC	6 cut(s)	55, 410, 461, 1040, 1071, 1499
SduI	GDGCHC	3 cut(s)	330, 729, 858
SfaNI	GCATC	2 cut(s)	160, 613
SmiMI	CAYNNNNRTG	2 cut(s)	437, 443
SmlI	CTYRAG	2 cut(s)	656, 1244
SmoI	CTYRAG	2 cut(s)	656, 1244
SpeI	ACTAGT	1 cut(s)	1400
SsiI	CCGC	5 cut(s)	160, 483, 487, 1031, 1300
SspI	AATATT	2 cut(s)	538, 1294
SspMI	CTAG	2 cut(s)	461, 1401
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	3 cut(s)	476, 1038, 1531
TaiI	ACGT	2 cut(s)	70, 886
TaqI	TCGA	6 cut(s)	81, 219, 281, 607, 1354, 1488
TfiI	GAWTC	2 cut(s)	1165, 1375
Tru1I	TTAA	4 cut(s)	90, 302, 969, 1251
Tru9I	TTAA	4 cut(s)	90, 302, 969, 1251
TscAI	CASTG	2 cut(s)	328, 1043
TseFI	GTSAC	5 cut(s)	37, 127, 295, 453, 568
Tsp45I	GTSAC	5 cut(s)	37, 127, 295, 453, 568
TspDTI	ATGAA	8 cut(s)	406, 638, 699, 1049, 1098, 1367, 1442, 1491
TspGWI	ACGGA	2 cut(s)	1002, 1516
TspRI	CASTG	2 cut(s)	328, 1043
XapI	RAATTY	4 cut(s)	177, 848, 1220, 1350
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	2 cut(s)	461, 1401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.