Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0021136

Physical Location & Seq

Genomic Coordinates Forward (+)

26306480 .. 26307914

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAAATCTTAACCCTAGGATTGCATTTTTTGGGGAAAGTGAAAGGCGCCATCTTTGATTCTTTGCTAGAGAAAACGTTGGGAAAAGAGCAGAGCATCAAATTTGGAGTCGGAAGAAGTTGCGGGACAGCCATCCTGGAGTTCAAATGTGGGAATCCAGAGAGAGGGCGATCCATGTTTGAAAATATTTTGAGGCAAAACCCGAAGAGAACAGAACTGTGGAGTGTTATTGATCTTGATCAAGAAATTCGACTTGGAGACGCTGATCTGATTCGTGCACTGTTTGAGAGGGCAACTAGTTTGAGCCTCCCGGCTAAAAAGATGAAATTCTTGTTAAAAAAATATCTGGAATATGAGGAGTGTCACGGTAACGAAGGGAGGGCCAATTACGTGAAACAGAAGGCAATGAGTTATGTTGAGAATACAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0000462 GO:0000466 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1 Suf

Protein Analysis

145

Amino Acids

16.34

Weight (kDa)

8.97

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021136)

Species	Orthologous Gene IDs
malus_domestica	MD14G1049800.v1.1
prunus_persica	Prupe.7G085700_v2.0.a1
pyrus_communis	pycom14g04120
rosa_laevigata	RLG00000023636
rosa_multiflora	Rmu_sc0005420.1_g000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AciI	CCGC	1 cut(s)	123
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	101, 246, 326
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	145, 182
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	135
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	381
ApaLI	GTGCAC	1 cut(s)	276
ApoI	RAATTY	3 cut(s)	101, 246, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	381
AsuC2I	CCSGG	1 cut(s)	311
AvrII	CCTAGG	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	2 cut(s)	59, 140
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	3 cut(s)	17, 68, 297
BfoI	RGCGCY	1 cut(s)	51
BlnI	CCTAGG	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	137, 311
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	137, 311
BmsI	GCATC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	383
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	170, 232, 238, 265
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	4 cut(s)	170, 232, 238, 265
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	4 cut(s)	219, 282, 368, 427
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	173, 235, 241, 268
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	4 cut(s)	170, 232, 238, 265
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	135, 309
BstSLI	GKGCMC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	381
CseI	GACGC	1 cut(s)	269
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	131, 306, 314, 383, 431
CviKI_1	RGCY	5 cut(s)	131, 306, 314, 383, 431
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	4 cut(s)	172, 234, 240, 267
DpnII	GATC	4 cut(s)	170, 232, 238, 265
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	176, 354, 414
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	1 cut(s)	119
FspBI	CTAG	3 cut(s)	17, 68, 297
GlaI	GCGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	4 cut(s)	59, 108, 154, 271
HpaII	CCGG	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	113, 270
Hpy188III	TCNNGA	4 cut(s)	158, 236, 242, 347
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	368, 394
HpyCH4III	ACNGT	4 cut(s)	219, 282, 368, 427
HpyCH4IV	ACGT	2 cut(s)	77, 390
HpyCH4V	TGCA	2 cut(s)	25, 278
HpySE526I	ACGT	2 cut(s)	77, 390
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	170, 232, 238, 265
LpnPI	CCDG	5 cut(s)	122, 149, 171, 324, 332
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	3 cut(s)	17, 68, 297
MaeII	ACGT	2 cut(s)	77, 390
MaeIII	GTNAC	2 cut(s)	362, 368
MalI	GATC	4 cut(s)	172, 234, 240, 267
MboI	GATC	4 cut(s)	170, 232, 238, 265
MboII	GAAGA	2 cut(s)	126, 217
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	4 cut(s)	101, 246, 326, 385
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	158, 186, 282, 317, 349, 372
MseI	TTAA	2 cut(s)	11, 335
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	137, 311
MvaI	CCWGG	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	4 cut(s)	170, 232, 238, 265
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	59, 154, 271
PfoI	TCCNGGA	1 cut(s)	135
PleI	GAGTC	1 cut(s)	116
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	391
Psp1406I	AACGTT	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	11, 335
Sau3AI	GATC	4 cut(s)	170, 232, 238, 265
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	137, 311
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	3 cut(s)	80, 393, 433
SfaNI	GCATC	1 cut(s)	105
SfoI	GGCGCC	1 cut(s)	49
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	4 cut(s)	101, 246, 326, 385
SsiI	CCGC	1 cut(s)	123
SspDI	GGCGCC	1 cut(s)	47
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	3 cut(s)	17, 68, 297
StyD4I	CCNGG	2 cut(s)	135, 309
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	4 cut(s)	219, 282, 368, 427
TaiI	ACGT	2 cut(s)	80, 393
TaqI	TCGA	1 cut(s)	250
TasI	AATT	4 cut(s)	101, 246, 326, 385
TfiI	GAWTC	3 cut(s)	59, 154, 271
Tru1I	TTAA	2 cut(s)	11, 335
Tru9I	TTAA	2 cut(s)	11, 335
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	276
XapI	RAATTY	3 cut(s)	101, 246, 326
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 68, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.