Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0021136

Physical Location & Seq

Genomic Coordinates Reverse (-)

3521517 .. 3522693

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04120.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTGCTTATAACTGTTGCCCTTGGTTCTCTAATGTGTGTGTCTGCGACTCTGCGTGAAAACAAATACGGAAGTCCTCCAGAGGAAGCTGTAAAGAAAGTATTTCAAAGAGCGGTACAGTGTAATGACTCCAAAACGGTTCATTTAGCACTTTTAGGACTCTATGAAAGGACTGAGCAAGACAGGTTGGCTGAGGAGCTACTTGATAAAATGACAAAGAAGTTCAAGACATCCTGCAAGGTAGTTGTTTCCTACATTTTTGTTCTCCTATCCCGGCATGTTTGGCTAAGGCGGGTAAAGCTGCTCTTAACGCAACAGCAGGATGGGATTCAGGATGTTATCAGTCGTGCTGAGAAAGTCCTTCCTAAGCATAAGCTTATCAAATTCAATTCCCAGACAGCCATCCTTGAGTTTAAATGTGGAGAACCCGAGAGAGGGCGATCTATGTTTGAGAATATTTTGCGGAATAACCCTAAGAGAACAGACTTGTGGAGCGTCTATCTTGATCAAGTAAATGCGTGTTTTCTAGCATTTAAATATTATTTCTTTCGTTGTGTCAAATTCAAGGCAGTAATTGACACTCTTTTTGTATCACCGTGGGAGGAAATTCGACTTGGAAATAGCGATCTGATTCATGCACTATTTGAGAGAGCAACTAGTTTGAGTCTCCCAGCTAAAAAGATGAAGGTGCGTACAATTATATTCCCCTTCAACTGCGAATGTTTCCCTTTTGTCTTTTCTGTTAGAGCTTGTACAGGTGTTTCATTTCTCAATCTGCAGTTCTTATTCAAAAAGTACCTGGCGTATGAGAGGTCTCGTGGTGATGGAGAGAAGATCGAGTGTGTGAAACGGAAGGCAATGGAGTATGTGGAGAATACAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0000462 GO:0000466 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1 Suf

Protein Analysis

296

Amino Acids

34.19

Weight (kDa)

9.43

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021136)

Species	Orthologous Gene IDs
malus_domestica	MD14G1049800.v1.1
prunus_persica	Prupe.7G085700_v2.0.a1
pyrus_communis	pycom14g04120
rosa_laevigata	RLG00000023636
rosa_multiflora	Rmu_sc0005420.1_g000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	3 cut(s)	113, 292, 463
AcsI	RAATTY	3 cut(s)	383, 560, 606
AfaI	GTAC	4 cut(s)	117, 694, 754, 797
AfiI	CCNNNNNNNGG	2 cut(s)	434, 435
AgsI	TTSAA	6 cut(s)	107, 226, 388, 565, 712, 790
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	1 cut(s)	798
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	7 cut(s)	89, 199, 301, 376, 674, 749, 884
AluI	AGCT	7 cut(s)	89, 199, 301, 376, 674, 749, 884
Alw26I	GTCTC	2 cut(s)	671, 819
Ama87I	CYCGRG	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	3 cut(s)	383, 560, 606
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	585, 833
AvaI	CYCGRG	1 cut(s)	428
BauI	CACGAG	1 cut(s)	816
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	3 cut(s)	317, 410, 818
BciT130I	CCWGG	1 cut(s)	800
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	671, 819
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	2 cut(s)	527, 657
BfmI	CTRYAG	1 cut(s)	776
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	274, 800
BmeT110I	CYCGRG	1 cut(s)	428
BmrFI	CCNGG	2 cut(s)	274, 800
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	3 cut(s)	192, 287, 366
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	819
BsaJI	CCNNGG	2 cut(s)	22, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 435
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	2 cut(s)	22, 596
BseGI	GGATG	4 cut(s)	230, 328, 340, 402
BseLI	CCNNNNNNNGG	2 cut(s)	434, 435
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	3 cut(s)	165, 183, 342
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	434, 435
BsmAI	GTCTC	2 cut(s)	671, 819
Bso31I	GGTCTC	1 cut(s)	819
BsoBI	CYCGRG	1 cut(s)	428
Bsp1407I	TGTACA	1 cut(s)	752
Bsp143I	GATC	4 cut(s)	440, 505, 625, 834
BspACI	CCGC	3 cut(s)	113, 292, 463
BspCNI	CTCAG	3 cut(s)	166, 184, 343
BspMAI	CTGCAG	1 cut(s)	780
BspTNI	GGTCTC	1 cut(s)	819
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	864
BsrGI	TGTACA	1 cut(s)	752
BssECI	CCNNGG	2 cut(s)	22, 596
BssMI	GATC	4 cut(s)	440, 505, 625, 834
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	5 cut(s)	16, 120, 139, 597, 880
BstAUI	TGTACA	1 cut(s)	752
BstDEI	CTNAG	6 cut(s)	174, 192, 287, 351, 366, 474
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	4 cut(s)	230, 328, 340, 402
BstKTI	GATC	4 cut(s)	443, 508, 628, 837
BstMAI	GTCTC	2 cut(s)	671, 819
BstMBI	GATC	4 cut(s)	440, 505, 625, 834
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 298, 310
BstNI	CCWGG	1 cut(s)	800
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	272, 798
BstSFI	CTRYAG	1 cut(s)	776
BstV1I	GCAGC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	4 cut(s)	230, 328, 340, 402
BtsIMutI	CAGTG	1 cut(s)	125
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	4 cut(s)	116, 693, 753, 796
CviAII	CATG	2 cut(s)	278, 635
CviQI	GTAC	4 cut(s)	116, 693, 753, 796
DdeI	CTNAG	6 cut(s)	174, 192, 287, 351, 366, 474
DpnI	GATC	4 cut(s)	442, 507, 627, 836
DpnII	GATC	4 cut(s)	440, 505, 625, 834
DraI	TTTAAA	2 cut(s)	415, 535
Eco130I	CCWWGG	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	819
Eco88I	CYCGRG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	2 cut(s)	281, 638
FaiI	YATR	9 cut(s)	11, 165, 279, 372, 446, 636, 701, 807, 867
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	277, 634
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	4 cut(s)	217, 335, 347, 389
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	2 cut(s)	527, 657
GluI	GCNGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	63
HapII	CCGG	1 cut(s)	274
HgaI	GACGC	1 cut(s)	484
Hin1II	CATG	2 cut(s)	281, 638
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	6 cut(s)	49, 128, 159, 328, 631, 664
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	2 cut(s)	585, 833
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	4 cut(s)	80, 226, 332, 503
HpyAV	CCTTC	4 cut(s)	371, 679, 718, 847
HpyCH4III	ACNGT	5 cut(s)	16, 120, 139, 597, 880
HpyCH4V	TGCA	3 cut(s)	237, 638, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 298, 310
HpyF3I	CTNAG	6 cut(s)	174, 192, 287, 351, 366, 474
Hsp92II	CATG	2 cut(s)	281, 638
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	440, 505, 625, 834
LmnI	GCTCC	2 cut(s)	196, 492
Lsp1109I	GCAGC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	527, 657
MalI	GATC	4 cut(s)	442, 507, 627, 836
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	4 cut(s)	440, 505, 625, 834
MboII	GAAGA	1 cut(s)	844
MluCI	AATT	6 cut(s)	383, 388, 560, 573, 606, 696
MlyI	GAGTC	4 cut(s)	43, 122, 153, 673
MnlI	CCTC	6 cut(s)	76, 87, 187, 428, 595, 804
MseI	TTAA	3 cut(s)	308, 414, 534
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	274, 800
MvaI	CCWGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	3 cut(s)	283, 298, 310
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	4 cut(s)	440, 505, 625, 834
NlaIII	CATG	2 cut(s)	281, 638
NspI	RCATGY	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	328, 631
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	4 cut(s)	43, 122, 153, 672
PpsI	GAGTC	4 cut(s)	43, 122, 153, 672
PsiI	TTATAA	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	798
PstI	CTGCAG	1 cut(s)	780
RsaI	GTAC	4 cut(s)	117, 694, 754, 797
RsaNI	GTAC	4 cut(s)	116, 693, 753, 796
SaqAI	TTAA	3 cut(s)	308, 414, 534
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	4 cut(s)	440, 505, 625, 834
SchI	GAGTC	4 cut(s)	43, 122, 153, 673
ScrFI	CCNGG	2 cut(s)	274, 800
SfcI	CTRYAG	1 cut(s)	776
SmiI	ATTTAAAT	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SpeI	ACTAGT	1 cut(s)	656
Sse9I	AATT	6 cut(s)	383, 388, 560, 573, 606, 696
SsiI	CCGC	3 cut(s)	113, 292, 463
SspI	AATATT	2 cut(s)	457, 539
SspMI	CTAG	2 cut(s)	527, 657
StyD4I	CCNGG	2 cut(s)	272, 798
StyI	CCWWGG	1 cut(s)	22
SwaI	ATTTAAAT	1 cut(s)	535
TaaI	ACNGT	5 cut(s)	16, 120, 139, 597, 880
TaqI	TCGA	2 cut(s)	610, 837
TasI	AATT	6 cut(s)	383, 388, 560, 573, 606, 696
TatI	WGTACW	1 cut(s)	752
TfiI	GAWTC	2 cut(s)	328, 631
Tru1I	TTAA	3 cut(s)	308, 414, 534
Tru9I	TTAA	3 cut(s)	308, 414, 534
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	5 cut(s)	131, 180, 623, 698, 753
TspGWI	ACGGA	2 cut(s)	84, 865
TspRI	CASTG	1 cut(s)	125
XapI	RAATTY	3 cut(s)	383, 560, 606
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	2 cut(s)	527, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.