Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010771

Physical Location & Seq

Genomic Coordinates Reverse (-)

18819327 .. 18820009

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1115800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTATCACTGGCAATATGGCACGCAGAAGAAGTATTTGTATGACTTGCATAACGAGGTTTCAATGCTCACGCTGGGTCCCAGTCTTGGCATTGTTAGGGTCTCTAGAATCAGCCTCATCTACACTGAGTTGTCTACCGGAGTCCCAGAATCATTTACTCATTTCTTAACCAACCTACTGGCGCTTTTACCAAGTGATTGCCTTTGTTTGCGGTATCTTGTTGGTCGTATTGGACCCAAATCTTATGGGATGTATCGCTGTATGGCAGTTGTAAAGACATATGGGAAGTTTGGCACGGTGTTGGTTATGGCACAAACATCTGGCCTTGGAGAGAGCAGCTGTTCAAGTTCTGCAGCCATTGTGAGCAGCGCCAAGTGTCCTGCGCTGCAGAACTTGCAGGCCATCTATGAGCAAGAAGCGCACTCAACTACTAGGCAGGCGTATGGATTCATGCAAAATGCAAGGACTCAAAGGAACAGCTCCGGGCCTGGAATCATGAAAAAAAGGAGCAAAAACGAGAGTTCAGAGTCAAATCAAGAAAGCAGGACATCATTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0031090 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

187

Amino Acids

20.61

Weight (kDa)

9.34

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23640
fragaria_vesca	FvH4_5g03590 FvH4_5g03590 FvH4_5g03590 FvH4_5g03590
malus_domestica	MD06G1095800.v1.1 MD14G1115800.v1.1 MD14G1115900.v1.1
prunus_persica	Prupe.5G110400_v2.0.a1
pyrus_communis	pycom06g09210
rosa_chinensis	RchiOBHm_Chr7g0196121
rosa_laevigata	RLG00000004062
rosa_multiflora	Rmu_sc0003017.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259760
rosa_rugosa	Rorug07G0030800
rosa_samantha	Rh7AG156700 Rh7BG158400 Rh7CG162200 Rh7DG157500
rosa_wichuraiana	Rw7G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	63, 345
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	2 cut(s)	339, 480
AluI	AGCT	2 cut(s)	339, 480
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	3 cut(s)	322, 399, 485
ApeKI	GCWGC	4 cut(s)	336, 353, 366, 385
AspLEI	GCGC	4 cut(s)	184, 371, 385, 421
AspS9I	GGNCC	3 cut(s)	77, 233, 485
AsuC2I	CCSGG	1 cut(s)	484
AvaII	GGWCC	2 cut(s)	77, 233
BbvI	GCAGC	4 cut(s)	348, 365, 372, 378
BccI	CCATC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	105, 432
BfmI	CTRYAG	2 cut(s)	351, 386
BfoI	RGCGCY	2 cut(s)	185, 372
BisI	GCNGC	4 cut(s)	337, 354, 367, 386
BlsI	GCNGC	4 cut(s)	338, 355, 368, 387
Bme1390I	CCNGG	2 cut(s)	484, 489
Bme18I	GGWCC	2 cut(s)	77, 233
BmgT120I	GGNCC	3 cut(s)	77, 233, 485
BmiI	GGNNCC	3 cut(s)	78, 79, 235
BmrFI	CCNGG	2 cut(s)	484, 489
BmrI	ACTGGG	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	14, 81, 183
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	3 cut(s)	14, 81, 183
BseXI	GCAGC	4 cut(s)	348, 365, 372, 378
BseYI	CCCAGC	1 cut(s)	73
BshFI	GGCC	3 cut(s)	324, 401, 487
BsiSI	CCGG	2 cut(s)	138, 483
BslFI	GGGAC	2 cut(s)	63, 128
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	63, 128
BsnI	GGCC	3 cut(s)	324, 401, 487
Bso31I	GGTCTC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	3 cut(s)	324, 401, 487
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	3 cut(s)	78, 79, 235
BspMAI	CTGCAG	2 cut(s)	355, 390
BspTNI	GGTCTC	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	14, 81, 183
BssECI	CCNNGG	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstC8I	GCNNGC	3 cut(s)	23, 399, 438
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	255
BstH2I	RGCGCY	2 cut(s)	185, 372
BstHHI	GCGC	4 cut(s)	184, 371, 385, 421
BstMAI	GTCTC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 418
BstNI	CCWGG	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	482, 487
BstSFI	CTRYAG	2 cut(s)	351, 386
BstV1I	GCAGC	4 cut(s)	348, 365, 372, 378
BstXI	CCANNNNNNTGG	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	324, 401, 487
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	7, 123
Cac8I	GCNNGC	3 cut(s)	23, 399, 438
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	4 cut(s)	184, 371, 385, 421
Cfr13I	GGNCC	3 cut(s)	77, 233, 485
CviAII	CATG	2 cut(s)	451, 496
CviJI	RGCY	7 cut(s)	114, 324, 339, 356, 401, 480, 487
CviKI_1	RGCY	7 cut(s)	114, 324, 339, 356, 401, 480, 487
DdeI	CTNAG	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	77, 233
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	454, 499
FaqI	GGGAC	2 cut(s)	63, 128
FatI	CATG	2 cut(s)	450, 495
FauNDI	CATATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	4 cut(s)	337, 354, 367, 386
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	4 cut(s)	337, 354, 367, 386
FspBI	CTAG	2 cut(s)	105, 432
GlaI	GCGC	4 cut(s)	183, 370, 384, 420
GluI	GCNGC	4 cut(s)	337, 354, 367, 386
GsaI	CCCAGC	1 cut(s)	77
HaeII	RGCGCY	2 cut(s)	185, 372
HaeIII	GGCC	3 cut(s)	324, 401, 487
HapII	CCGG	2 cut(s)	138, 483
HhaI	GCGC	4 cut(s)	184, 371, 385, 421
Hin1II	CATG	2 cut(s)	454, 499
Hin6I	GCGC	4 cut(s)	182, 369, 383, 419
HinP1I	GCGC	4 cut(s)	182, 369, 383, 419
HinfI	GANTC	7 cut(s)	108, 141, 149, 447, 466, 492, 527
HpaII	CCGG	2 cut(s)	138, 483
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	3 cut(s)	105, 496, 536
Hpy8I	GTNNAC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	6 cut(s)	49, 353, 388, 397, 454, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 418
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	454, 499
HspAI	GCGC	4 cut(s)	182, 369, 383, 419
KflI	GGGWCCC	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	485, 507
Lsp1109I	GCAGC	4 cut(s)	348, 365, 372, 378
MaeI	CTAG	2 cut(s)	105, 432
MboII	GAAGA	1 cut(s)	40
MlyI	GAGTC	3 cut(s)	150, 460, 536
MnlI	CCTC	2 cut(s)	49, 125
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	2 cut(s)	138, 483
MspR9I	CCNGG	2 cut(s)	484, 489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	394, 418
NciI	CCSGG	1 cut(s)	484
NdeI	CATATG	1 cut(s)	280
NlaIII	CATG	2 cut(s)	454, 499
NlaIV	GGNNCC	3 cut(s)	78, 79, 235
PagI	TCATGA	1 cut(s)	495
PfeI	GAWTC	4 cut(s)	108, 149, 447, 492
PkrI	GCNGC	4 cut(s)	338, 355, 368, 387
PleI	GAGTC	3 cut(s)	149, 460, 535
PpsI	GAGTC	3 cut(s)	149, 460, 535
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	3 cut(s)	78, 79, 235
PspPI	GGNCC	3 cut(s)	77, 233, 485
PspPPI	RGGWCCY	1 cut(s)	77
PstI	CTGCAG	2 cut(s)	355, 390
PvuII	CAGCTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	4 cut(s)	337, 354, 367, 386
Sau96I	GGNCC	3 cut(s)	77, 233, 485
SchI	GAGTC	3 cut(s)	150, 460, 536
ScrFI	CCNGG	2 cut(s)	484, 489
SetI	ASST	4 cut(s)	60, 177, 341, 482
SfcI	CTRYAG	2 cut(s)	351, 386
SinI	GGWCC	2 cut(s)	77, 233
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	2 cut(s)	105, 432
StyD4I	CCNGG	2 cut(s)	482, 487
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	298
TfiI	GAWTC	4 cut(s)	108, 149, 447, 492
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	2 cut(s)	14, 130
TseI	GCWGC	4 cut(s)	336, 353, 366, 385
TspDTI	ATGAA	2 cut(s)	439, 512
TspRI	CASTG	2 cut(s)	14, 130
VpaK11BI	GGWCC	2 cut(s)	77, 233
XbaI	TCTAGA	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	2 cut(s)	105, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.