MD14G1129400.v1.1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0017730
Physical Location & Seq
Reverse (-)
20684714 .. 20687123
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1129400.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGGTGATGATGAGGAATTCATCAAATTCCTTGATAATGTTGAGCTATGTCTTCATGATCACGATGATGATATTTTTATTAAAGCCAAATAAGAGATTGGTCAATGCTGGTCAGAATGATATCGTAGTACTGCCTAATTTTTGTACAACACGTTTAAATGTTCTCCAGCCACCCTATCATGATATACCGAAATCCATCTGTTCATCCCTCGATTGGCACGGCTACCGTATTAGCTTCTTTCAGGATAATAACGCTGTTCTTACCGTTGTACTATCGGGAATGAACGAAAACAGTTGGGTCGGAGTCGGGGTGTCAAAGGACGGCATGATGGTTGGTTCGAGTGCCGTGGTGGGATGGATGAACAGAGACGGCAGATCGGGCACAGTAAAGCAATATTATTTGAAAGGACGTACGAGGAATGATGAAATCATACCAGATAAAGGTGAATTGAAATTCACAAATGTTACACCCACCATTGTTGTCAAGGACCAAATCATTTATCTAGGGTTTCAACTCCAGTTTTCCAGTCGTCTTGATCGTCAGCCCTTTCTGTTTGCTGCCGGGTATGGAAAGCCTGGTGCTAACAACATCCTACCAACGCATAAATATAGAAGCGCCTTGTTAGTTGATTTCCCTAAAGGAGTCATTCGTATAGGGTTTGTAGACAGCAGGAAAGTGAAGATGACCCATGGAATACTAACTATTATTGGATGGGGCATAATAATTCCATTCGGAGCATCAATGGCCAGATATCTTAGGGAGTATGAGCCTTTGTGGTACTACCTTCATTCATCAGTTCAGTTTATAGGTTTCTTTGTGGGGCTTTCTGGTGTGGCTGTTGGAAGGACACTATATGAACTAGTACATGCTGACTTTAACAGCCACAGATCCATAGGGTACATTGTGCTTGCACTCAGTGTTCTTCAGCTATGCCAGTTTATCATGAGGCCATCCAGGACCTCCAAGGTCAGGAAGTACTGGAACAAGAGCCATCAATGGGTGGGGAGATCGGTGGTCGTGCTTGCTCTTGTCAATATTTTCATTGGTCTCTTTTACGGAAATGGAGGGAAACCTTTTAAGACATTTTTTTTGTGCGCCTTTTCTCTTTTCGTTTTGTCCCAAATAATTTTGGAAATCCGGCACCTGCTTCAGAGTAAAAGAGCAGCTCTTGCTACTACCGCTGATGAGCCTCCTCTTTTTCAAGTTCCTCCACGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

407

Amino Acids

45.87

Weight (kDa)

9.96

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 79 - 138 1.1e-07 DOMON domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017730)

Species Orthologous Gene IDs
malus_domestica MD14G1129400.v1.1
prunus_persica Prupe.5G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194691
rosa_laevigata RLG00000004181
rosa_multiflora Rmu_sc0018264.1_g000002
rosa_roxburghii Rroxscaffold_3G00261150
rosa_rugosa Rorug07G0017300
rosa_samantha Rh7AG144800 Rh7BG144800 Rh7CG148600 Rh7DG146000
rosa_wichuraiana Rw7G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1152
Acc36I ACCTGC 1 cut(s) 1152
AccB1I GGYRCC 1 cut(s) 1140
AccI GTMKAC 1 cut(s) 663
AciI CCGC 1 cut(s) 1179
AclWI GGATC 1 cut(s) 882
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 3 cut(s) 16, 25, 452
AcuI CTGAAG 2 cut(s) 908, 1133
AdeI CACNNNGTG 1 cut(s) 917
AfaI GTAC 8 cut(s) 129, 145, 270, 412, 779, 864, 899, 977
AfiI CCNNNNNNNGG 4 cut(s) 213, 440, 969, 997
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 4 cut(s) 403, 451, 512, 1202
AhlI ACTAGT 1 cut(s) 859
AjnI CCWGG 2 cut(s) 574, 953
AluBI AGCT 4 cut(s) 45, 234, 928, 1166
AluI AGCT 4 cut(s) 45, 234, 928, 1166
Alw26I GTCTC 2 cut(s) 360, 1052
AlwI GGATC 1 cut(s) 882
AoxI GGCC 2 cut(s) 744, 947
ApeKI GCWGC 2 cut(s) 557, 1163
ApoI RAATTY 3 cut(s) 16, 25, 452
ArsI GACNNNNNNTTYG 2 cut(s) 1072, 1104
AspLEI GCGC 2 cut(s) 617, 1097
AspS9I GGNCC 2 cut(s) 487, 957
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 16, 455
AvaII GGWCC 2 cut(s) 487, 957
BaeGI GKGCMC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 746
BanI GGYRCC 1 cut(s) 1140
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 544, 1175
BccI CCATC 6 cut(s) 203, 322, 348, 705, 958, 999
BceAI ACGGC 4 cut(s) 235, 329, 337, 385
BciT130I CCWGG 2 cut(s) 576, 955
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 360, 1052
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 2 cut(s) 503, 860
BfoI RGCGCY 1 cut(s) 618
BfuAI ACCTGC 1 cut(s) 1152
BisI GCNGC 2 cut(s) 558, 1164
BlsI GCNGC 2 cut(s) 559, 1165
BmcAI AGTACT 2 cut(s) 129, 977
Bme1390I CCNGG 3 cut(s) 562, 576, 955
Bme18I GGWCC 2 cut(s) 487, 957
BmgT120I GGNCC 2 cut(s) 487, 957
BmiI GGNNCC 1 cut(s) 1142
BmrFI CCNGG 3 cut(s) 562, 576, 955
BmsI GCATC 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 149, 500
BpuMI CCSGG 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 1052
BsaJI CCNNGG 3 cut(s) 345, 688, 963
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 440, 969, 997
Bse1I ACTGG 4 cut(s) 517, 525, 934, 983
BseBI CCWGG 2 cut(s) 576, 955
BseDI CCNNGG 3 cut(s) 345, 688, 963
BseGI GGATG 6 cut(s) 203, 359, 363, 588, 716, 950
BseLI CCNNNNNNNGG 4 cut(s) 213, 440, 969, 997
BseMII CTCAG 1 cut(s) 928
BseNI ACTGG 4 cut(s) 517, 525, 934, 983
BseRI GAGGAG 1 cut(s) 1182
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 2 cut(s) 544, 1175
BshFI GGCC 2 cut(s) 746, 949
BshNI GGYRCC 1 cut(s) 1140
BsiSI CCGG 2 cut(s) 561, 1138
BsiWI CGTACG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 1102
BslI CCNNNNNNNGG 4 cut(s) 213, 440, 969, 997
BsmAI GTCTC 2 cut(s) 360, 1052
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 1102
BsnI GGCC 2 cut(s) 746, 949
Bso31I GGTCTC 1 cut(s) 1052
Bsp1286I GDGCHC 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 143
Bsp143I GATC 5 cut(s) 57, 374, 535, 887, 1007
Bsp19I CCATGG 1 cut(s) 688
BspACI CCGC 1 cut(s) 1179
BspANI GGCC 2 cut(s) 746, 949
BspCNI CTCAG 1 cut(s) 927
BspHI TCATGA 3 cut(s) 54, 178, 942
BspLI GGNNCC 1 cut(s) 1142
BspMI ACCTGC 1 cut(s) 1152
BspPI GGATC 1 cut(s) 882
BspT107I GGYRCC 1 cut(s) 1140
BspTNI GGTCTC 1 cut(s) 1052
BsrGI TGTACA 1 cut(s) 143
BsrI ACTGG 4 cut(s) 517, 525, 934, 983
BssECI CCNNGG 3 cut(s) 345, 688, 963
BssMI GATC 5 cut(s) 57, 374, 535, 887, 1007
BssT1I CCWWGG 2 cut(s) 688, 963
Bst2UI CCWGG 2 cut(s) 576, 955
Bst4CI ACNGT 4 cut(s) 227, 265, 293, 385
BstAPI GCANNNNNTGC 1 cut(s) 1169
BstAUI TGTACA 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 909, 1023
BstDEI CTNAG 3 cut(s) 755, 914, 1218
BstDSI CCRYGG 2 cut(s) 345, 688
BstF5I GGATG 6 cut(s) 203, 359, 363, 588, 716, 950
BstH2I RGCGCY 1 cut(s) 618
BstHHI GCGC 2 cut(s) 617, 1097
BstKTI GATC 5 cut(s) 60, 377, 538, 890, 1010
BstMAI GTCTC 2 cut(s) 360, 1052
BstMBI GATC 5 cut(s) 57, 374, 535, 887, 1007
BstMWI GCNNNNNNNGC 4 cut(s) 378, 743, 1169, 1178
BstNI CCWGG 2 cut(s) 576, 955
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 3 cut(s) 560, 574, 953
BstSLI GKGCMC 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 544, 1175
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
BsuRI GGCC 2 cut(s) 746, 949
BtgI CCRYGG 2 cut(s) 345, 688
BtsCI GGATG 6 cut(s) 203, 359, 363, 588, 716, 950
BtsIMutI CAGTG 1 cut(s) 922
BveI ACCTGC 1 cut(s) 1152
Cac8I GCNNGC 2 cut(s) 909, 1023
CciI TCATGA 3 cut(s) 54, 178, 942
CfoI GCGC 2 cut(s) 617, 1097
Cfr13I GGNCC 2 cut(s) 487, 957
Csp6I GTAC 8 cut(s) 128, 144, 269, 411, 778, 863, 898, 976
CspCI CAANNNNNGTGG 2 cut(s) 460, 495
CviAII CATG 6 cut(s) 55, 179, 325, 689, 866, 943
CviQI GTAC 8 cut(s) 128, 144, 269, 411, 778, 863, 898, 976
DdeI CTNAG 3 cut(s) 755, 914, 1218
DpnI GATC 5 cut(s) 59, 376, 537, 889, 1009
DpnII GATC 5 cut(s) 57, 374, 535, 887, 1007
DraI TTTAAA 1 cut(s) 156
DraIII CACNNNGTG 1 cut(s) 917
EaeI YGGCCR 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 688, 963
Eco31I GGTCTC 1 cut(s) 1052
Eco32I GATATC 2 cut(s) 121, 752
Eco47I GGWCC 2 cut(s) 487, 957
Eco57I CTGAAG 2 cut(s) 908, 1133
EcoO109I RGGNCCY 1 cut(s) 957
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 574, 953
EcoRV GATATC 2 cut(s) 121, 752
EcoT14I CCWWGG 2 cut(s) 688, 963
ErhI CCWWGG 2 cut(s) 688, 963
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 6 cut(s) 58, 182, 328, 692, 869, 946
FaqI GGGAC 1 cut(s) 1102
FatI CATG 6 cut(s) 54, 178, 324, 688, 865, 942
FbaI TGATCA 1 cut(s) 57
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 2 cut(s) 558, 1164
FokI GGATG 6 cut(s) 190, 366, 370, 575, 723, 937
Fsp4HI GCNGC 2 cut(s) 558, 1164
FspBI CTAG 2 cut(s) 503, 860
GlaI GCGC 2 cut(s) 616, 1096
GluI GCNGC 2 cut(s) 558, 1164
GsuI CTGGAG 2 cut(s) 149, 500
HaeII RGCGCY 1 cut(s) 618
HaeIII GGCC 2 cut(s) 746, 949
HapII CCGG 2 cut(s) 561, 1138
HhaI GCGC 2 cut(s) 617, 1097
Hin1II CATG 6 cut(s) 58, 182, 328, 692, 869, 946
Hin6I GCGC 2 cut(s) 615, 1095
HinP1I GCGC 2 cut(s) 615, 1095
HinfI GANTC 2 cut(s) 303, 642
HpaII CCGG 2 cut(s) 561, 1138
HphI GGTGA 2 cut(s) 16, 455
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 4 cut(s) 114, 302, 734, 1152
Hpy188III TCNNGA 8 cut(s) 55, 61, 179, 242, 276, 533, 943, 970
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 794, 837
HpyCH4III ACNGT 4 cut(s) 227, 265, 293, 385
HpyCH4IV ACGT 2 cut(s) 151, 409
HpyCH4V TGCA 1 cut(s) 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 378, 743, 1169, 1178
HpyF3I CTNAG 3 cut(s) 755, 914, 1218
HpySE526I ACGT 2 cut(s) 151, 409
Hsp92II CATG 6 cut(s) 58, 182, 328, 692, 869, 946
HspAI GCGC 2 cut(s) 615, 1095
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 5 cut(s) 57, 374, 535, 887, 1007
LmnI GCTCC 1 cut(s) 734
Lsp1109I GCAGC 2 cut(s) 544, 1175
LweI GCATC 1 cut(s) 746
MaeI CTAG 2 cut(s) 503, 860
MaeII ACGT 2 cut(s) 151, 409
MaeIII GTNAC 1 cut(s) 463
MalI GATC 5 cut(s) 59, 376, 537, 889, 1009
MboI GATC 5 cut(s) 57, 374, 535, 887, 1007
MboII GAAGA 3 cut(s) 43, 691, 914
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 7 cut(s) 16, 25, 136, 446, 452, 723, 1125
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 2 cut(s) 312, 651
MmeI TCCRAC 2 cut(s) 280, 820
MnlI CCTC 9 cut(s) 6, 218, 408, 939, 970, 1058, 1200, 1203, 1218
Mox20I TGGCCA 1 cut(s) 746
MscI TGGCCA 1 cut(s) 746
MseI TTAA 4 cut(s) 80, 155, 876, 1077
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 2 cut(s) 561, 1138
MspR9I CCNGG 3 cut(s) 562, 576, 955
MvaI CCWGG 2 cut(s) 576, 955
MwoI GCNNNNNNNGC 4 cut(s) 378, 743, 1169, 1178
NciI CCSGG 1 cut(s) 562
NcoI CCATGG 1 cut(s) 688
NdeII GATC 5 cut(s) 57, 374, 535, 887, 1007
NlaIII CATG 6 cut(s) 58, 182, 328, 692, 869, 946
NlaIV GGNNCC 1 cut(s) 1142
NspI RCATGY 1 cut(s) 869
PagI TCATGA 3 cut(s) 54, 178, 942
PaqCI CACCTGC 1 cut(s) 1152
PcsI WCGNNNNNNNCGW 1 cut(s) 535
Pfl23II CGTACG 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 953
PkrI GCNGC 2 cut(s) 559, 1165
PleI GAGTC 2 cut(s) 311, 650
PpsI GAGTC 2 cut(s) 311, 650
PpuMI RGGWCCY 1 cut(s) 957
Psp5II RGGWCCY 1 cut(s) 957
Psp6I CCWGG 2 cut(s) 574, 953
PspGI CCWGG 2 cut(s) 574, 953
PspLI CGTACG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 1142
PspPI GGNCC 2 cut(s) 487, 957
PspPPI RGGWCCY 1 cut(s) 957
PsuI RGATCY 1 cut(s) 887
RsaI GTAC 8 cut(s) 129, 145, 270, 412, 779, 864, 899, 977
RsaNI GTAC 8 cut(s) 128, 144, 269, 411, 778, 863, 898, 976
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 4 cut(s) 80, 155, 876, 1077
SatI GCNGC 2 cut(s) 558, 1164
Sau3AI GATC 5 cut(s) 57, 374, 535, 887, 1007
Sau96I GGNCC 2 cut(s) 487, 957
ScaI AGTACT 2 cut(s) 129, 977
SchI GAGTC 2 cut(s) 312, 651
ScrFI CCNGG 3 cut(s) 562, 576, 955
SduI GDGCHC 1 cut(s) 383
SfaNI GCATC 1 cut(s) 746
SinI GGWCC 2 cut(s) 487, 957
SmiMI CAYNNNNRTG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 859
Sse9I AATT 7 cut(s) 16, 25, 136, 446, 452, 723, 1125
SsiI CCGC 1 cut(s) 1179
SspI AATATT 2 cut(s) 395, 1036
SspMI CTAG 2 cut(s) 503, 860
StyD4I CCNGG 3 cut(s) 560, 574, 953
StyI CCWWGG 2 cut(s) 688, 963
TaaI ACNGT 4 cut(s) 227, 265, 293, 385
TaiI ACGT 2 cut(s) 154, 412
TaqI TCGA 2 cut(s) 210, 338
TasI AATT 7 cut(s) 16, 25, 136, 446, 452, 723, 1125
TatI WGTACW 5 cut(s) 127, 143, 268, 862, 975
Tru1I TTAA 4 cut(s) 80, 155, 876, 1077
Tru9I TTAA 4 cut(s) 80, 155, 876, 1077
TscAI CASTG 1 cut(s) 922
TseI GCWGC 2 cut(s) 557, 1163
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 1 cut(s) 922
VpaK11BI GGWCC 2 cut(s) 487, 957
XapI RAATTY 3 cut(s) 16, 25, 452
XceI RCATGY 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 2 cut(s) 503, 860
ZrmI AGTACT 2 cut(s) 129, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.