Rroxscaffold_3G00261150

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017730
Physical Location & Seq
Reverse (-)
55491006 .. 55492760
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261150.1

Sequence Viewer

Length: 1119 bp
ATGGTGAATGCAGCGGATATGAACAATACAACTGTTGTGGTGCCTCATTTTTGTGCTACAGGTTCAACTCCTCTTCGCGAACCCTATAATGATATTCGGAAATTCATCTGTTCATCGCTTGATTGGCACGGCTACAGTATCGCCTTCTGGAAAGATGAACATGATGTTGTTACAATAGTACTATCGGGTATGTATGAAATGAACTGGATTGGAGTTGGAGTATCGCGAGATGGGAAAATGGTGGGTGCGAGTGCTGTGGTGGGATGGCTGCGAGGCAAAGACAGCAACTCCAGCGTTATAAAGCAGTACTTTTTGGAGGGTCAGTCGAGTGATCAATTCGTGCCAGATAAAGGTGATCTGGAATTCGGCAAAGCTGCTCCTACAATGCTTCTTCAAGACACAACCATTTACCTGGCATTTCAACTTCAATTTGCAAACGGTATTACTCGTCAACCTTTTATATTTGCTGCTGGAATAGGAAAGCCTGGTGACAACAACATCCTACCAAAGCACGCCTTTAATACCTCCATGACAGTTGATTTCTCTAAAGGTACGTTCACTCTTGGTTATGTAGACATCAGCAAAGTGAAGCTGAGTCATGGAATTCTGGCTATAGTTGGATGGGGCATATTCATTCCATTAGGAGTAGCATTGGCCAGGTACCTTAGGGATCTTGAACCTTTGTGGTACTATCTTCATTCATCAGTTCAGTTTGTGGGATTCTTTGTTGGCCTTGCTGCTGTGGCTGTTGGGAAGTCATTATACGATCGTATAGAAACCGACTTTTCATACCACAGAGCCATCGGCTACACTGTGCTTTCTCTCAGTGTTCTTGAGGTGTGCCAATTCGTCATGAGGCCGTCGAGTAGTTCCAGTGTTCGGTACTACTGGAATCTGGCTCATTATTGGGTGGGGAGAATTACAATCTTGCTCGGACCCGTCAACATTCTCATTGGACTCTATTGTGGAAATGGAGGTGAAAAGTTAAAGATTACATATTTATGTGTTCTTGTTTTCTTTCTTGTGGTTGCACTCCTCTTAGAAATACGGCTGCTGATGAAGAGGAAAAGAGAGGCAACTACCAATTTGACCAAGACTCCTGTTTTTCAAGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

372

Amino Acids

41.44

Weight (kDa)

8.65

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017730)

Species Orthologous Gene IDs
malus_domestica MD14G1129400.v1.1
prunus_persica Prupe.5G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194691
rosa_laevigata RLG00000004181
rosa_multiflora Rmu_sc0018264.1_g000002
rosa_roxburghii Rroxscaffold_3G00261150
rosa_rugosa Rorug07G0017300
rosa_samantha Rh7AG144800 Rh7BG144800 Rh7CG148600 Rh7DG146000
rosa_wichuraiana Rw7G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
Acc65I GGTACC 1 cut(s) 660
AccB1I GGYRCC 2 cut(s) 40, 660
AccI GTMKAC 1 cut(s) 573
AccII CGCG 2 cut(s) 78, 226
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 678
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 3 cut(s) 101, 362, 603
AfaI GTAC 6 cut(s) 180, 308, 553, 662, 689, 884
AfiI CCNNNNNNNGG 2 cut(s) 350, 879
AgsI TTSAA 6 cut(s) 66, 395, 422, 428, 677, 1109
AjnI CCWGG 3 cut(s) 411, 484, 656
AluBI AGCT 2 cut(s) 374, 592
AluI AGCT 2 cut(s) 374, 592
AlwI GGATC 1 cut(s) 678
AoxI GGCC 3 cut(s) 654, 730, 857
ApeKI GCWGC 6 cut(s) 11, 268, 374, 467, 737, 1051
ApoI RAATTY 3 cut(s) 101, 362, 603
Asp718I GGTACC 1 cut(s) 660
AspS9I GGNCC 1 cut(s) 935
AsuHPI GGTGA 4 cut(s) 16, 365, 500, 989
AvaII GGWCC 1 cut(s) 935
AxyI CCTNAGG 1 cut(s) 665
BalI TGGCCA 1 cut(s) 656
BanI GGYRCC 2 cut(s) 40, 660
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BbvI GCAGC 6 cut(s) 23, 255, 361, 454, 724, 1038
BccI CCATC 4 cut(s) 224, 258, 615, 809
BceAI ACGGC 3 cut(s) 145, 844, 1064
BciT130I CCWGG 3 cut(s) 413, 486, 658
BclI TGATCA 1 cut(s) 331
BfmI CTRYAG 3 cut(s) 57, 133, 612
BisI GCNGC 6 cut(s) 12, 269, 375, 468, 738, 1052
BlsI GCNGC 6 cut(s) 13, 270, 376, 469, 739, 1053
BmcAI AGTACT 2 cut(s) 180, 308
Bme1390I CCNGG 3 cut(s) 413, 486, 658
Bme18I GGWCC 1 cut(s) 935
BmgT120I GGNCC 1 cut(s) 935
BmiI GGNNCC 3 cut(s) 42, 662, 937
BmrFI CCNGG 3 cut(s) 413, 486, 658
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 854
BsaXI ACNNNNNCTCC 8 cut(s) 204, 234, 272, 302, 308, 338, 1081, 1111
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 879
Bse1I ACTGG 3 cut(s) 209, 873, 893
Bse21I CCTNAGG 1 cut(s) 665
BseBI CCWGG 3 cut(s) 413, 486, 658
BseGI GGATG 3 cut(s) 269, 498, 626
BseLI CCNNNNNNNGG 2 cut(s) 350, 879
BseMII CTCAG 2 cut(s) 584, 838
BseNI ACTGG 3 cut(s) 209, 873, 893
BseRI GAGGAG 2 cut(s) 60, 1025
BseXI GCAGC 6 cut(s) 23, 255, 361, 454, 724, 1038
Bsh1236I CGCG 2 cut(s) 78, 226
Bsh1285I CGRYCG 1 cut(s) 769
BshFI GGCC 3 cut(s) 656, 732, 859
BshNI GGYRCC 2 cut(s) 40, 660
BsiEI CGRYCG 1 cut(s) 769
BslI CCNNNNNNNGG 2 cut(s) 350, 879
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 656, 732, 859
Bsp143I GATC 4 cut(s) 331, 355, 670, 766
Bsp68I TCGCGA 2 cut(s) 78, 226
BspACI CCGC 1 cut(s) 14
BspANI GGCC 3 cut(s) 656, 732, 859
BspCNI CTCAG 2 cut(s) 585, 837
BspFNI CGCG 2 cut(s) 78, 226
BspHI TCATGA 1 cut(s) 852
BspLI GGNNCC 3 cut(s) 42, 662, 937
BspPI GGATC 1 cut(s) 678
BspT107I GGYRCC 2 cut(s) 40, 660
BsrI ACTGG 3 cut(s) 209, 873, 893
BssMI GATC 4 cut(s) 331, 355, 670, 766
Bst2UI CCWGG 3 cut(s) 413, 486, 658
Bst4CI ACNGT 5 cut(s) 34, 137, 440, 535, 814
Bst6I CTCTTC 2 cut(s) 78, 1055
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 4 cut(s) 593, 665, 824, 1039
BstF5I GGATG 3 cut(s) 269, 498, 626
BstFNI CGCG 2 cut(s) 78, 226
BstKTI GATC 4 cut(s) 334, 358, 673, 769
BstMBI GATC 4 cut(s) 331, 355, 670, 766
BstMCI CGRYCG 1 cut(s) 769
BstMWI GCNNNNNNNGC 4 cut(s) 124, 282, 291, 743
BstNI CCWGG 3 cut(s) 413, 486, 658
BstSCI CCNGG 3 cut(s) 411, 484, 656
BstSFI CTRYAG 3 cut(s) 57, 133, 612
BstUI CGCG 2 cut(s) 78, 226
BstV1I GCAGC 6 cut(s) 23, 255, 361, 454, 724, 1038
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 1 cut(s) 670
Bsu36I CCTNAGG 1 cut(s) 665
BsuRI GGCC 3 cut(s) 656, 732, 859
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 3 cut(s) 269, 498, 626
BtsIMutI CAGTG 3 cut(s) 810, 832, 880
BtuMI TCGCGA 2 cut(s) 78, 226
Cac8I GCNNGC 1 cut(s) 513
CciI TCATGA 1 cut(s) 852
Cfr13I GGNCC 1 cut(s) 935
Csp6I GTAC 6 cut(s) 179, 307, 552, 661, 688, 883
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 4 cut(s) 161, 529, 599, 853
CviQI GTAC 6 cut(s) 179, 307, 552, 661, 688, 883
DdeI CTNAG 4 cut(s) 593, 665, 824, 1039
DpnI GATC 4 cut(s) 333, 357, 672, 768
DpnII GATC 4 cut(s) 331, 355, 670, 766
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 2 cut(s) 78, 1055
EarI CTCTTC 2 cut(s) 78, 1055
Eco47I GGWCC 1 cut(s) 935
Eco81I CCTNAGG 1 cut(s) 665
EcoRI GAATTC 2 cut(s) 362, 603
EcoRII CCWGG 3 cut(s) 411, 484, 656
FaeI CATG 4 cut(s) 164, 532, 602, 856
FalI AAGNNNNNCTT 4 cut(s) 293, 325, 500, 532
FatI CATG 4 cut(s) 160, 528, 598, 852
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 6 cut(s) 12, 269, 375, 468, 738, 1052
FokI GGATG 3 cut(s) 276, 485, 633
Fsp4HI GCNGC 6 cut(s) 12, 269, 375, 468, 738, 1052
GluI GCNGC 6 cut(s) 12, 269, 375, 468, 738, 1052
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 3 cut(s) 656, 732, 859
Hin1II CATG 4 cut(s) 164, 532, 602, 856
HincII GTYRAC 2 cut(s) 452, 943
HindII GTYRAC 2 cut(s) 452, 943
HinfI GANTC 5 cut(s) 595, 720, 892, 957, 1096
HphI GGTGA 4 cut(s) 16, 365, 500, 989
Hpy166II GTNNAC 4 cut(s) 452, 558, 574, 943
Hpy188I TCNGA 2 cut(s) 99, 935
Hpy188III TCNNGA 8 cut(s) 77, 148, 225, 359, 395, 674, 833, 853
Hpy8I GTNNAC 4 cut(s) 452, 558, 574, 943
Hpy99I CGWCG 1 cut(s) 865
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 5 cut(s) 34, 137, 440, 535, 814
HpyCH4IV ACGT 1 cut(s) 554
HpyCH4V TGCA 3 cut(s) 11, 434, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 282, 291, 743
HpyF3I CTNAG 4 cut(s) 593, 665, 824, 1039
HpySE526I ACGT 1 cut(s) 554
Hsp92II CATG 4 cut(s) 164, 532, 602, 856
KpnI GGTACC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 4 cut(s) 331, 355, 670, 766
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 6 cut(s) 23, 255, 361, 454, 724, 1038
MaeII ACGT 1 cut(s) 554
MaeIII GTNAC 2 cut(s) 169, 488
MalI GATC 4 cut(s) 333, 357, 672, 768
MboI GATC 4 cut(s) 331, 355, 670, 766
MboII GAAGA 4 cut(s) 65, 383, 686, 1072
MflI RGATCY 1 cut(s) 670
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 8 cut(s) 101, 335, 362, 428, 603, 845, 918, 1084
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 3 cut(s) 604, 951, 1090
MmeI TCCRAC 2 cut(s) 196, 598
Mox20I TGGCCA 1 cut(s) 656
MscI TGGCCA 1 cut(s) 656
MseI TTAA 3 cut(s) 519, 986, 1117
MslI CAYNNNNRTG 2 cut(s) 51, 1000
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 413, 486, 658
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 3 cut(s) 413, 486, 658
MvnI CGCG 2 cut(s) 78, 226
MwoI GCNNNNNNNGC 4 cut(s) 124, 282, 291, 743
NdeII GATC 4 cut(s) 331, 355, 670, 766
NlaIII CATG 4 cut(s) 164, 532, 602, 856
NlaIV GGNNCC 3 cut(s) 42, 662, 937
NmuCI GTSAC 1 cut(s) 488
NruI TCGCGA 2 cut(s) 78, 226
PagI TCATGA 1 cut(s) 852
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 720, 892
PkrI GCNGC 6 cut(s) 13, 270, 376, 469, 739, 1053
Ple19I CGATCG 1 cut(s) 769
PleI GAGTC 3 cut(s) 603, 951, 1090
PpsI GAGTC 3 cut(s) 603, 951, 1090
PsiI TTATAA 1 cut(s) 299
Psp6I CCWGG 3 cut(s) 411, 484, 656
PspGI CCWGG 3 cut(s) 411, 484, 656
PspN4I GGNNCC 3 cut(s) 42, 662, 937
PspPI GGNCC 1 cut(s) 935
PsuI RGATCY 1 cut(s) 670
PvuI CGATCG 1 cut(s) 769
RruI TCGCGA 2 cut(s) 78, 226
RsaI GTAC 6 cut(s) 180, 308, 553, 662, 689, 884
RsaNI GTAC 6 cut(s) 179, 307, 552, 661, 688, 883
RseI CAYNNNNRTG 2 cut(s) 51, 1000
SaqAI TTAA 3 cut(s) 519, 986, 1117
SatI GCNGC 6 cut(s) 12, 269, 375, 468, 738, 1052
Sau3AI GATC 4 cut(s) 331, 355, 670, 766
Sau96I GGNCC 1 cut(s) 935
ScaI AGTACT 2 cut(s) 180, 308
SchI GAGTC 3 cut(s) 604, 951, 1090
ScrFI CCNGG 3 cut(s) 413, 486, 658
SfcI CTRYAG 3 cut(s) 57, 133, 612
SinI GGWCC 1 cut(s) 935
SmiMI CAYNNNNRTG 2 cut(s) 51, 1000
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 8 cut(s) 101, 335, 362, 428, 603, 845, 918, 1084
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 411, 484, 656
TaaI ACNGT 5 cut(s) 34, 137, 440, 535, 814
TaiI ACGT 1 cut(s) 557
TaqI TCGA 2 cut(s) 326, 863
TasI AATT 8 cut(s) 101, 335, 362, 428, 603, 845, 918, 1084
TatI WGTACW 2 cut(s) 178, 306
TfiI GAWTC 2 cut(s) 720, 892
Tru1I TTAA 3 cut(s) 519, 986, 1117
Tru9I TTAA 3 cut(s) 519, 986, 1117
TscAI CASTG 3 cut(s) 817, 832, 880
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 6 cut(s) 11, 268, 374, 467, 737, 1051
Tsp45I GTSAC 1 cut(s) 488
TspRI CASTG 3 cut(s) 817, 832, 880
VpaK11BI GGWCC 1 cut(s) 935
XapI RAATTY 3 cut(s) 101, 362, 603
XmiI GTMKAC 1 cut(s) 573
ZrmI AGTACT 2 cut(s) 180, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.