Rmu_sc0018264.1_g000002

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018264.1
OG0017730
Physical Location & Seq
Reverse (-)
23708 .. 25458
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018264.1_g000002.1.cds

Sequence Viewer

Length: 1173 bp
atggtgaatgcagcggatatgaacaatacaactgttgtggtgcctcatttttgtgctacagattcaactcctcttcacgaaccctataaggatatccggaaattcatctgttcatcgcttgattggcacggctacagtatcgccgtaagtcagattatctatctagaaatgtcctccaatatcctgtcaagcagtctgttctggaaagatgaacatgatgttgttacaatagtactatcgggtatgtatgaaatgaactggattggagttggagtatcgcgagatgggaaaatggtgggtgcgagtgctgtggtgggatggctgcgaggcaaagacagcaactccagcgttataaagaagtactttttggagggtcagtcgagtgatcaatttgtgccagataaaggtgatctggaattcggcaaagctgctcctacaatgcttcttcaagacacaaccatttacctggcatttcaacttcaatttgcaaacggtattactcgtcaaccttttatatttgctgctggaataggaaagcctggtgacaacaacatcctaccaaagtacgcctttaatacctccatgacagttgatttctctaaaggtactttcactcttggttatgtagacatcagcaaagtgaagctgagccatggaattctggctatagttggatggggcatattcattccattaggagtagcattggccaggtaccttagggatcttgaacctttgtggtactatcttcattcatcagttcagtttgtgggattctttgttggccttgctgctgtggctgttgggaagtcattatacgatcgtatagatgccgacttcttataccacagagccatcggctacaccgtgctttctcttagtgttcttgaggtgtgccaattcgtcatgaggccgtcgagtagttccaatgttcggtactactggaatctggctcattattgggtggggagaattacaatcttgctcggacccgtcaacattctcattggactctactgtggaaatggaggtgaaaacttaaagattacatatttatgtgttcttgttttctttgttgtggctgcactcctcttagaaatacggctgctgatgaagaggaaaagagaagcacctaccaatttgaccaagactcctgtttttcaagttgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

390

Amino Acids

43.43

Weight (kDa)

8.14

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017730)

Species Orthologous Gene IDs
malus_domestica MD14G1129400.v1.1
prunus_persica Prupe.5G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194691
rosa_laevigata RLG00000004181
rosa_multiflora Rmu_sc0018264.1_g000002
rosa_roxburghii Rroxscaffold_3G00261150
rosa_rugosa Rorug07G0017300
rosa_samantha Rh7AG144800 Rh7BG144800 Rh7CG148600 Rh7DG146000
rosa_wichuraiana Rw7G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 2 cut(s) 40, 714
AccI GTMKAC 1 cut(s) 627
AccII CGCG 1 cut(s) 280
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 732
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 3 cut(s) 101, 416, 657
AfaI GTAC 7 cut(s) 234, 362, 566, 607, 716, 743, 938
AfiI CCNNNNNNNGG 2 cut(s) 404, 933
AgsI TTSAA 6 cut(s) 66, 449, 476, 482, 731, 1163
AjnI CCWGG 3 cut(s) 465, 538, 710
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 2 cut(s) 428, 646
AluI AGCT 2 cut(s) 428, 646
AlwI GGATC 1 cut(s) 732
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 3 cut(s) 708, 784, 911
ApeKI GCWGC 7 cut(s) 11, 322, 428, 521, 791, 1082, 1105
ApoI RAATTY 3 cut(s) 101, 416, 657
Asp718I GGTACC 1 cut(s) 714
AspS9I GGNCC 1 cut(s) 989
AsuHPI GGTGA 4 cut(s) 16, 419, 554, 1043
AvaII GGWCC 1 cut(s) 989
AxyI CCTNAGG 1 cut(s) 719
BalI TGGCCA 1 cut(s) 710
BanI GGYRCC 2 cut(s) 40, 714
BarI GAAGNNNNNNTAC 2 cut(s) 800, 832
BbvI GCAGC 7 cut(s) 23, 309, 415, 508, 778, 1069, 1092
BccI CCATC 4 cut(s) 278, 312, 669, 863
BceAI ACGGC 4 cut(s) 128, 145, 898, 1118
BciT130I CCWGG 3 cut(s) 467, 540, 712
BclI TGATCA 1 cut(s) 385
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 3 cut(s) 57, 133, 666
BisI GCNGC 7 cut(s) 12, 323, 429, 522, 792, 1083, 1106
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 7 cut(s) 13, 324, 430, 523, 793, 1084, 1107
BmcAI AGTACT 2 cut(s) 234, 362
Bme1390I CCNGG 3 cut(s) 467, 540, 712
Bme18I GGWCC 1 cut(s) 989
BmgT120I GGNCC 1 cut(s) 989
BmiI GGNNCC 3 cut(s) 42, 716, 991
BmrFI CCNGG 3 cut(s) 467, 540, 712
BmsI GCATC 1 cut(s) 820
BpmI CTGGAG 1 cut(s) 328
Bpu1102I GCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 908
BsaJI CCNNGG 1 cut(s) 652
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 8 cut(s) 258, 288, 326, 356, 362, 392, 1135, 1165
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 933
Bse1I ACTGG 2 cut(s) 263, 947
Bse21I CCTNAGG 1 cut(s) 719
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 3 cut(s) 467, 540, 712
BseDI CCNNGG 1 cut(s) 652
BseGI GGATG 3 cut(s) 323, 552, 680
BseLI CCNNNNNNNGG 2 cut(s) 404, 933
BseMII CTCAG 1 cut(s) 638
BseNI ACTGG 2 cut(s) 263, 947
BseRI GAGGAG 2 cut(s) 60, 1079
BseXI GCAGC 7 cut(s) 23, 309, 415, 508, 778, 1069, 1092
BsgI GTGCAG 1 cut(s) 1068
Bsh1236I CGCG 1 cut(s) 280
Bsh1285I CGRYCG 1 cut(s) 823
BshFI GGCC 3 cut(s) 710, 786, 913
BshNI GGYRCC 2 cut(s) 40, 714
BsiEI CGRYCG 1 cut(s) 823
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 404, 933
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 710, 786, 913
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 4 cut(s) 385, 409, 724, 820
Bsp1720I GCTNAGC 1 cut(s) 647
Bsp19I CCATGG 1 cut(s) 652
Bsp68I TCGCGA 1 cut(s) 280
BspACI CCGC 1 cut(s) 14
BspANI GGCC 3 cut(s) 710, 786, 913
BspCNI CTCAG 1 cut(s) 639
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 3 cut(s) 42, 716, 991
BspPI GGATC 1 cut(s) 732
BspT107I GGYRCC 2 cut(s) 40, 714
BsrI ACTGG 2 cut(s) 263, 947
BssECI CCNNGG 1 cut(s) 652
BssMI GATC 4 cut(s) 385, 409, 724, 820
BssT1I CCWWGG 1 cut(s) 652
Bst2UI CCWGG 3 cut(s) 467, 540, 712
Bst4CI ACNGT 6 cut(s) 34, 137, 494, 589, 868, 1019
Bst6I CTCTTC 2 cut(s) 78, 1109
BstDEI CTNAG 4 cut(s) 647, 719, 878, 1093
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 3 cut(s) 323, 552, 680
BstFNI CGCG 1 cut(s) 280
BstKTI GATC 4 cut(s) 388, 412, 727, 823
BstMBI GATC 4 cut(s) 385, 409, 724, 820
BstMCI CGRYCG 1 cut(s) 823
BstMWI GCNNNNNNNGC 4 cut(s) 124, 336, 345, 797
BstNI CCWGG 3 cut(s) 467, 540, 712
BstSCI CCNGG 3 cut(s) 465, 538, 710
BstSFI CTRYAG 3 cut(s) 57, 133, 666
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 7 cut(s) 23, 309, 415, 508, 778, 1069, 1092
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 724
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 3 cut(s) 710, 786, 913
BtgI CCRYGG 1 cut(s) 652
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 3 cut(s) 323, 552, 680
BtuMI TCGCGA 1 cut(s) 280
CciI TCATGA 1 cut(s) 906
Cfr13I GGNCC 1 cut(s) 989
Csp6I GTAC 7 cut(s) 233, 361, 565, 606, 715, 742, 937
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 4 cut(s) 215, 583, 653, 907
CviQI GTAC 7 cut(s) 233, 361, 565, 606, 715, 742, 937
DdeI CTNAG 4 cut(s) 647, 719, 878, 1093
DpnI GATC 4 cut(s) 387, 411, 726, 822
DpnII GATC 4 cut(s) 385, 409, 724, 820
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 2 cut(s) 78, 1109
EarI CTCTTC 2 cut(s) 78, 1109
Eco130I CCWWGG 1 cut(s) 652
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 989
Eco81I CCTNAGG 1 cut(s) 719
EcoRI GAATTC 2 cut(s) 416, 657
EcoRII CCWGG 3 cut(s) 465, 538, 710
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 4 cut(s) 218, 586, 656, 910
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 554, 586
FatI CATG 4 cut(s) 214, 582, 652, 906
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 7 cut(s) 12, 323, 429, 522, 792, 1083, 1106
FokI GGATG 3 cut(s) 330, 539, 687
Fsp4HI GCNGC 7 cut(s) 12, 323, 429, 522, 792, 1083, 1106
FspBI CTAG 1 cut(s) 164
GluI GCNGC 7 cut(s) 12, 323, 429, 522, 792, 1083, 1106
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 3 cut(s) 710, 786, 913
HapII CCGG 1 cut(s) 97
Hin1II CATG 4 cut(s) 218, 586, 656, 910
HincII GTYRAC 2 cut(s) 506, 997
HindII GTYRAC 2 cut(s) 506, 997
HinfI GANTC 5 cut(s) 62, 774, 946, 1011, 1150
HpaII CCGG 1 cut(s) 97
HphI GGTGA 4 cut(s) 16, 419, 554, 1043
Hpy166II GTNNAC 3 cut(s) 506, 628, 997
Hpy188I TCNGA 2 cut(s) 153, 989
Hpy8I GTNNAC 3 cut(s) 506, 628, 997
Hpy99I CGWCG 1 cut(s) 919
HpyCH4III ACNGT 6 cut(s) 34, 137, 494, 589, 868, 1019
HpyCH4V TGCA 3 cut(s) 11, 488, 1085
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 336, 345, 797
HpyF3I CTNAG 4 cut(s) 647, 719, 878, 1093
Hsp92II CATG 4 cut(s) 218, 586, 656, 910
Kpn2I TCCGGA 1 cut(s) 96
KpnI GGTACC 1 cut(s) 718
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 4 cut(s) 385, 409, 724, 820
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 7 cut(s) 23, 309, 415, 508, 778, 1069, 1092
LweI GCATC 1 cut(s) 820
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 223, 542
MalI GATC 4 cut(s) 387, 411, 726, 822
MboI GATC 4 cut(s) 385, 409, 724, 820
MboII GAAGA 4 cut(s) 65, 437, 740, 1126
MflI RGATCY 1 cut(s) 724
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 8 cut(s) 101, 389, 416, 482, 657, 899, 972, 1138
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 2 cut(s) 1005, 1144
MmeI TCCRAC 2 cut(s) 250, 652
Mox20I TGGCCA 1 cut(s) 710
MroI TCCGGA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 710
MseI TTAA 3 cut(s) 573, 1040, 1171
MslI CAYNNNNRTG 2 cut(s) 51, 1054
Msp20I TGGCCA 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 3 cut(s) 467, 540, 712
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 3 cut(s) 467, 540, 712
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 4 cut(s) 124, 336, 345, 797
NcoI CCATGG 1 cut(s) 652
NdeII GATC 4 cut(s) 385, 409, 724, 820
NlaIII CATG 4 cut(s) 218, 586, 656, 910
NlaIV GGNNCC 3 cut(s) 42, 716, 991
NmuCI GTSAC 1 cut(s) 542
NruI TCGCGA 1 cut(s) 280
PagI TCATGA 1 cut(s) 906
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 3 cut(s) 62, 774, 946
PkrI GCNGC 7 cut(s) 13, 324, 430, 523, 793, 1084, 1107
Ple19I CGATCG 1 cut(s) 823
PleI GAGTC 2 cut(s) 1005, 1144
PpsI GAGTC 2 cut(s) 1005, 1144
PsiI TTATAA 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 465, 538, 710
PspGI CCWGG 3 cut(s) 465, 538, 710
PspN4I GGNNCC 3 cut(s) 42, 716, 991
PspPI GGNCC 1 cut(s) 989
PsuI RGATCY 1 cut(s) 724
PvuI CGATCG 1 cut(s) 823
RruI TCGCGA 1 cut(s) 280
RsaI GTAC 7 cut(s) 234, 362, 566, 607, 716, 743, 938
RsaNI GTAC 7 cut(s) 233, 361, 565, 606, 715, 742, 937
RseI CAYNNNNRTG 2 cut(s) 51, 1054
SaqAI TTAA 3 cut(s) 573, 1040, 1171
SatI GCNGC 7 cut(s) 12, 323, 429, 522, 792, 1083, 1106
Sau3AI GATC 4 cut(s) 385, 409, 724, 820
Sau96I GGNCC 1 cut(s) 989
ScaI AGTACT 2 cut(s) 234, 362
SchI GAGTC 2 cut(s) 1005, 1144
ScrFI CCNGG 3 cut(s) 467, 540, 712
SfaNI GCATC 1 cut(s) 820
SfcI CTRYAG 3 cut(s) 57, 133, 666
SinI GGWCC 1 cut(s) 989
SmiMI CAYNNNNRTG 2 cut(s) 51, 1054
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 8 cut(s) 101, 389, 416, 482, 657, 899, 972, 1138
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 465, 538, 710
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 6 cut(s) 34, 137, 494, 589, 868, 1019
TaqI TCGA 2 cut(s) 380, 917
TasI AATT 8 cut(s) 101, 389, 416, 482, 657, 899, 972, 1138
TatI WGTACW 2 cut(s) 232, 360
TfiI GAWTC 3 cut(s) 62, 774, 946
Tru1I TTAA 3 cut(s) 573, 1040, 1171
Tru9I TTAA 3 cut(s) 573, 1040, 1171
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 7 cut(s) 11, 322, 428, 521, 791, 1082, 1105
Tsp45I GTSAC 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 989
XapI RAATTY 3 cut(s) 101, 416, 657
XbaI TCTAGA 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 1 cut(s) 164
ZrmI AGTACT 2 cut(s) 234, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.