Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0017730

Physical Location & Seq

Genomic Coordinates Reverse (-)

12063589 .. 12065597

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G120900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGATGATATTGTTATTAGAGCCAAAGAAGAGCTTGGTCAATGCTGGTCGGAATGATGCAACAACTATTGTAGTACCTAATTTTTGTACAACAAATTCAAATGTTCTTCTTCCACCCTACCATGACATCCCTAAATCCATTTGTTCAACCCTTGATTGGCACGGCTACAGCATTAGCTTTCATCAGGACAAGGACGCCGTTGTTACCGTGATACTAATGGGGATACATGAGAATAATTGGATCTCAGTCGGGGTGTCCAAGGACGGGATGATGGTCAGTTCGAGTGCGGTGGTAGGGTGGATGAACAACGATGGTAAATCCGGCACGGTAAAACAGTATTTTCTAAGTGGACGTATGACCAGTGAAGAAGTGATACCAGAAAAAGGTGACTTGAAATTCACCAATGTTACACCTACCATTGTTCTCAAGGACAAAATAATTTACCTGGGGTTTCAACTCCAGTTTCCCCAACGTCTCAATCGGCAGCCATTTCTATTTGCTTGCGGGTTTGGCAAACCTGGTGAGAACAATATCCTGCCGAAGCATAAATACAGAAGCGCCTTGGCAGTTGACTTCTCCAGAGGTGCTATATATCTTGGTTTTGTAGACAGCACAAGCATGAAGCTGACCCATGGAATATTGGCTATAACTGGATGGGGCATAATCATTCCATTTGGAGTTCCTATAGCCAGACATTTTAGGCAGTATGAGCCTTTATGGTACTACCTTCATTCATCAGTTCAGTTTGTGGGCTTCTTTGTTGGTCTTGCTGCTGTGGCTGTTGGAAGGACACTCTACGATCTCATCCATGCCGACTTTAATTCCCACAGAGTCCTTGGATTCGCTATCCTCGCACTCAGTGTTCTTCAGATATGCCAATTCATTGTGAGGCCATCCAGTACCAGCAAAGCCCAAGACTACTGGAACAAGATCCATCATTGGGTGGGGAGACTGGTGATTGTGCTTGCAGCTGTGAACATTTTCCTTGGGCTTTATAAAGGAAATGGAGCAAGAGGGTTGATGATAACATTTTTGTGTTTCTTTTTTACTTTTCTTTTCATCTCAATTTATTTGGAAATACGGCTGCTGCTGCAGAAAAAAAGAGAACCAAATACAAAGTTAACTGAGCCTCCTCTTTTTCAAGTACCTCCACGCAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

389

Amino Acids

43.64

Weight (kDa)

9.5

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017730)

Species	Orthologous Gene IDs
malus_domestica	MD14G1129400.v1.1
prunus_persica	Prupe.5G120900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194691
rosa_laevigata	RLG00000004181
rosa_multiflora	Rmu_sc0018264.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261150
rosa_rugosa	Rorug07G0017300
rosa_samantha	Rh7AG144800 Rh7BG144800 Rh7CG148600 Rh7DG146000
rosa_wichuraiana	Rw7G012370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	999
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	2 cut(s)	290, 507
AclWI	GGATC	2 cut(s)	251, 928
AcsI	RAATTY	2 cut(s)	97, 398
AcuI	CTGAAG	1 cut(s)	854
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	863
AfaI	GTAC	5 cut(s)	78, 91, 725, 904, 1149
AfiI	CCNNNNNNNGG	4 cut(s)	159, 267, 386, 943
AgsI	TTSAA	5 cut(s)	102, 150, 397, 458, 1145
AjnI	CCWGG	2 cut(s)	447, 520
AluBI	AGCT	4 cut(s)	36, 180, 628, 974
AluI	AGCT	4 cut(s)	36, 180, 628, 974
Alw26I	GTCTC	2 cut(s)	482, 946
AlwI	GGATC	2 cut(s)	251, 928
AoxI	GGCC	1 cut(s)	893
ApeKI	GCWGC	6 cut(s)	487, 773, 971, 1087, 1090, 1093
ApoI	RAATTY	2 cut(s)	97, 398
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	1 cut(s)	563
AsuHPI	GGTGA	4 cut(s)	394, 401, 536, 970
BarI	GAAGNNNNNNTAC	4 cut(s)	360, 392, 536, 568
BbvI	GCAGC	6 cut(s)	499, 760, 983, 1074, 1077, 1080
BccI	CCATC	5 cut(s)	268, 308, 651, 904, 945
BceAI	ACGGC	3 cut(s)	181, 185, 1100
BciT130I	CCWGG	2 cut(s)	449, 522
BciVI	GTATCC	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	482, 946
BfmI	CTRYAG	3 cut(s)	169, 687, 1094
BfoI	RGCGCY	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	6 cut(s)	488, 774, 972, 1088, 1091, 1094
BlsI	GCNGC	6 cut(s)	489, 775, 973, 1089, 1092, 1095
Bme1390I	CCNGG	2 cut(s)	449, 522
BmrFI	CCNGG	2 cut(s)	449, 522
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	2 cut(s)	446, 565
BpuEI	CTTGAG	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	6 cut(s)	261, 448, 564, 634, 838, 988
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 267, 386, 943
Bse1I	ACTGG	6 cut(s)	363, 463, 658, 900, 929, 960
BseBI	CCWGG	2 cut(s)	449, 522
BseDI	CCNNGG	6 cut(s)	261, 448, 564, 634, 838, 988
BseGI	GGATG	6 cut(s)	129, 276, 309, 662, 807, 896
BseLI	CCNNNNNNNGG	4 cut(s)	159, 267, 386, 943
BseMII	CTCAG	3 cut(s)	261, 874, 1119
BseNI	ACTGG	6 cut(s)	363, 463, 658, 900, 929, 960
BseRI	GAGGAG	1 cut(s)	1125
BseXI	GCAGC	6 cut(s)	499, 760, 983, 1074, 1077, 1080
BshFI	GGCC	1 cut(s)	895
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	4 cut(s)	159, 267, 386, 943
BsmAI	GTCTC	2 cut(s)	482, 946
BsmBI	CGTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	895
Bsp1407I	TGTACA	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	243, 802, 933
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	2 cut(s)	290, 507
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	3 cut(s)	260, 873, 1120
BspMAI	CTGCAG	1 cut(s)	1098
BspPI	GGATC	2 cut(s)	251, 928
BspQI	GCTCTTC	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	89
BsrI	ACTGG	6 cut(s)	363, 463, 658, 900, 929, 960
BssECI	CCNNGG	6 cut(s)	261, 448, 564, 634, 838, 988
BssMI	GATC	3 cut(s)	243, 802, 933
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	5 cut(s)	261, 564, 634, 838, 988
Bst2UI	CCWGG	2 cut(s)	449, 522
Bst4CI	ACNGT	3 cut(s)	211, 331, 339
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	505, 969
BstDEI	CTNAG	4 cut(s)	247, 347, 860, 1128
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	6 cut(s)	129, 276, 309, 662, 807, 896
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	3 cut(s)	246, 805, 936
BstMAI	GTCTC	2 cut(s)	482, 946
BstMBI	GATC	3 cut(s)	243, 802, 933
BstMWI	GCNNNNNNNGC	5 cut(s)	513, 712, 779, 854, 1093
BstNI	CCWGG	2 cut(s)	449, 522
BstSCI	CCNGG	2 cut(s)	447, 520
BstSFI	CTRYAG	3 cut(s)	169, 687, 1094
BstV1I	GCAGC	6 cut(s)	499, 760, 983, 1074, 1077, 1080
BstX2I	RGATCY	2 cut(s)	243, 933
BstYI	RGATCY	2 cut(s)	243, 933
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	895
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	6 cut(s)	129, 276, 309, 662, 807, 896
BtsIMutI	CAGTG	2 cut(s)	370, 868
Cac8I	GCNNGC	2 cut(s)	505, 969
CfoI	GCGC	1 cut(s)	563
CseI	GACGC	1 cut(s)	206
CsiI	ACCWGGT	1 cut(s)	520
Csp6I	GTAC	5 cut(s)	77, 90, 724, 903, 1148
CviAII	CATG	5 cut(s)	125, 230, 622, 635, 812
CviQI	GTAC	5 cut(s)	77, 90, 724, 903, 1148
DdeI	CTNAG	4 cut(s)	247, 347, 860, 1128
DpnI	GATC	3 cut(s)	245, 804, 935
DpnII	GATC	3 cut(s)	243, 802, 933
DraIII	CACNNNGTG	1 cut(s)	863
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	5 cut(s)	261, 564, 634, 838, 988
Eco57I	CTGAAG	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	447, 520
EcoT14I	CCWWGG	5 cut(s)	261, 564, 634, 838, 988
ErhI	CCWWGG	5 cut(s)	261, 564, 634, 838, 988
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	5 cut(s)	128, 233, 625, 638, 815
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	5 cut(s)	124, 229, 621, 634, 811
FauI	CCCGC	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	6 cut(s)	488, 774, 972, 1088, 1091, 1094
FokI	GGATG	6 cut(s)	116, 283, 316, 669, 794, 883
Fsp4HI	GCNGC	6 cut(s)	488, 774, 972, 1088, 1091, 1094
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	6 cut(s)	488, 774, 972, 1088, 1091, 1094
GsuI	CTGGAG	2 cut(s)	446, 565
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	1 cut(s)	895
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	563
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	5 cut(s)	128, 233, 625, 638, 815
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	2 cut(s)	574, 1125
HindII	GTYRAC	2 cut(s)	574, 1125
HinfI	GANTC	2 cut(s)	834, 843
HpaI	GTTAAC	1 cut(s)	1125
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	4 cut(s)	394, 401, 536, 970
Hpy166II	GTNNAC	5 cut(s)	353, 574, 610, 979, 1125
Hpy188I	TCNGA	2 cut(s)	54, 873
Hpy188III	TCNNGA	2 cut(s)	188, 582
Hpy8I	GTNNAC	5 cut(s)	353, 574, 610, 979, 1125
HpyAV	CCTTC	2 cut(s)	740, 783
HpyCH4III	ACNGT	3 cut(s)	211, 331, 339
HpyCH4IV	ACGT	2 cut(s)	355, 475
HpyCH4V	TGCA	3 cut(s)	62, 971, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	513, 712, 779, 854, 1093
HpyF3I	CTNAG	4 cut(s)	247, 347, 860, 1128
HpySE526I	ACGT	2 cut(s)	355, 475
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	128, 233, 625, 638, 815
HspAI	GCGC	1 cut(s)	561
KspAI	GTTAAC	1 cut(s)	1125
Kzo9I	GATC	3 cut(s)	243, 802, 933
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	1010
Lsp1109I	GCAGC	6 cut(s)	499, 760, 983, 1074, 1077, 1080
LweI	GCATC	1 cut(s)	49
MabI	ACCWGGT	1 cut(s)	520
MaeII	ACGT	2 cut(s)	355, 475
MaeIII	GTNAC	3 cut(s)	205, 389, 409
MalI	GATC	3 cut(s)	245, 804, 935
MboI	GATC	3 cut(s)	243, 802, 933
MboII	GAAGA	5 cut(s)	43, 101, 104, 380, 860
MflI	RGATCY	2 cut(s)	243, 933
MluCI	AATT	9 cut(s)	82, 97, 238, 398, 441, 823, 881, 1068, 1159
MlyI	GAGTC	1 cut(s)	843
MmeI	TCCRAC	2 cut(s)	32, 766
MnlI	CCTC	7 cut(s)	578, 863, 885, 1010, 1143, 1146, 1161
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	2 cut(s)	822, 1124
MslI	CAYNNNNRTG	2 cut(s)	620, 1036
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	449, 522
MvaI	CCWGG	2 cut(s)	449, 522
MwoI	GCNNNNNNNGC	5 cut(s)	513, 712, 779, 854, 1093
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	3 cut(s)	243, 802, 933
NlaIII	CATG	5 cut(s)	128, 233, 625, 638, 815
NmuCI	GTSAC	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	1 cut(s)	843
PkrI	GCNGC	6 cut(s)	489, 775, 973, 1089, 1092, 1095
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PsiI	TTATAA	1 cut(s)	999
Psp6I	CCWGG	2 cut(s)	447, 520
PspGI	CCWGG	2 cut(s)	447, 520
PstI	CTGCAG	1 cut(s)	1098
PsuI	RGATCY	2 cut(s)	243, 933
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	5 cut(s)	78, 91, 725, 904, 1149
RsaNI	GTAC	5 cut(s)	77, 90, 724, 903, 1148
RseI	CAYNNNNRTG	2 cut(s)	620, 1036
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	822, 1124
SatI	GCNGC	6 cut(s)	488, 774, 972, 1088, 1091, 1094
Sau3AI	GATC	3 cut(s)	243, 802, 933
SchI	GAGTC	1 cut(s)	843
ScrFI	CCNGG	2 cut(s)	449, 522
SexAI	ACCWGGT	1 cut(s)	520
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	3 cut(s)	169, 687, 1094
SmiMI	CAYNNNNRTG	2 cut(s)	620, 1036
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	9 cut(s)	82, 97, 238, 398, 441, 823, 881, 1068, 1159
SsiI	CCGC	2 cut(s)	290, 507
SspI	AATATT	1 cut(s)	642
StyD4I	CCNGG	2 cut(s)	447, 520
StyI	CCWWGG	5 cut(s)	261, 564, 634, 838, 988
TaaI	ACNGT	3 cut(s)	211, 331, 339
TaiI	ACGT	2 cut(s)	358, 478
TaqI	TCGA	1 cut(s)	284
TasI	AATT	9 cut(s)	82, 97, 238, 398, 441, 823, 881, 1068, 1159
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	843
Tru1I	TTAA	2 cut(s)	822, 1124
Tru9I	TTAA	2 cut(s)	822, 1124
TscAI	CASTG	2 cut(s)	370, 868
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	6 cut(s)	487, 773, 971, 1087, 1090, 1093
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	8 cut(s)	173, 320, 638, 722, 726, 874, 1051, 1152
TspRI	CASTG	2 cut(s)	370, 868
XapI	RAATTY	2 cut(s)	97, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.