MD14G1175500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0022323
Physical Location & Seq
Reverse (-)
26891696 .. 26892541
846 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1175500.v1.1.491

Sequence Viewer

Length: 297 bp
ATGTGTGACCCTGATTATCTGTTGGCCCGCGCTATCGAGAAACTGCCAACTTACGGCTTCTTATTCCCTCGTCCCCGTCCTTCTCCATATCCTGTGGATCATCACCTGATCATGGCTCCTGCCCGTTTCGCCGTGGATGAGATTAACAAGGAAAAGAATGCCAACCTGCATCTTGTGAGAGTTGTTGCTGCTTTTGACCGGCGCTCATTTGAATATTTCGATTGGAGGTGCTTGATGAGGGCATGGCCAAAATTTACGGAGCAGAAGTTAAAAGAAAATCCGGCAGCAGCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.53

Weight (kDa)

9.03

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022323)

Species Orthologous Gene IDs
malus_domestica MD03G1041000.v1.1 MD14G1175500.v1.1
pyrus_communis pycom03g03170 pycom03g03180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AccII CGCG 1 cut(s) 30
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 53, 112
AgsI TTSAA 1 cut(s) 212
AlwI GGATC 1 cut(s) 105
AoxI GGCC 2 cut(s) 24, 245
ApeKI GCWGC 3 cut(s) 188, 284, 287
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 2 cut(s) 32, 204
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 95
BalI TGGCCA 1 cut(s) 247
BbvI GCAGC 1 cut(s) 175
BceAI ACGGC 2 cut(s) 70, 116
BclI TGATCA 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 189, 285, 288
BlsI GCNGC 3 cut(s) 190, 286, 289
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 112
Bse118I RCCGGY 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 53, 112
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 26, 247
BsiSI CCGG 2 cut(s) 199, 281
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 53, 112
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 2 cut(s) 26, 247
Bsp143I GATC 2 cut(s) 97, 108
BspACI CCGC 1 cut(s) 28
BspANI GGCC 2 cut(s) 26, 247
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 97, 108
BstC8I GCNNGC 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 32, 204
BstKTI GATC 2 cut(s) 100, 111
BstMBI GATC 2 cut(s) 97, 108
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 26, 247
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 2 cut(s) 32, 204
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 2 cut(s) 112, 243
CviJI RGCY 4 cut(s) 26, 57, 116, 247
CviKI_1 RGCY 4 cut(s) 26, 57, 116, 247
DpnI GATC 2 cut(s) 99, 110
DpnII GATC 2 cut(s) 97, 108
EaeI YGGCCR 1 cut(s) 245
FaeI CATG 2 cut(s) 115, 246
FaiI YATR 4 cut(s) 88, 113, 244, 295
FaqI GGGAC 1 cut(s) 57
FatI CATG 2 cut(s) 111, 242
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 189, 285, 288
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 189, 285, 288
GlaI GCGC 2 cut(s) 31, 203
GluI GCNGC 3 cut(s) 189, 285, 288
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 2 cut(s) 26, 247
HapII CCGG 2 cut(s) 199, 281
HhaI GCGC 2 cut(s) 32, 204
Hin1II CATG 2 cut(s) 115, 246
Hin6I GCGC 2 cut(s) 30, 202
HinP1I GCGC 2 cut(s) 30, 202
HpaII CCGG 2 cut(s) 199, 281
HphI GGTGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92II CATG 2 cut(s) 115, 246
HspAI GCGC 2 cut(s) 30, 202
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 97, 108
LmnI GCTCC 2 cut(s) 121, 259
LpnPI CCDG 6 cut(s) 24, 105, 119, 132, 179, 212
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 99, 110
MboI GATC 2 cut(s) 97, 108
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 247
MnlI CCTC 3 cut(s) 78, 219, 231
Mox20I TGGCCA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 247
MseI TTAA 2 cut(s) 144, 269
Msp20I TGGCCA 1 cut(s) 247
MspI CCGG 2 cut(s) 199, 281
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 2 cut(s) 97, 108
NlaIII CATG 2 cut(s) 115, 246
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 5
PctI GAATGC 1 cut(s) 163
PkrI GCNGC 3 cut(s) 190, 286, 289
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 144, 269
SatI GCNGC 3 cut(s) 189, 285, 288
Sau3AI GATC 2 cut(s) 97, 108
Sau96I GGNCC 1 cut(s) 25
SetI ASST 3 cut(s) 108, 168, 230
SfaNI GCATC 1 cut(s) 178
Sse9I AATT 1 cut(s) 251
SsiI CCGC 1 cut(s) 28
SspI AATATT 1 cut(s) 215
TaqI TCGA 2 cut(s) 36, 219
TasI AATT 1 cut(s) 251
Tru1I TTAA 2 cut(s) 144, 269
Tru9I TTAA 2 cut(s) 144, 269
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 188, 284, 287
Tsp45I GTSAC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 272
XapI RAATTY 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.