Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0022323

Physical Location & Seq

Genomic Coordinates Reverse (-)

2521038 .. 2523552

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03180.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTGGAGTAAATCATCATGTTTTCTTCACACCAATAAAATAGCTGCTGCAAAATTGGTCGGAGGTTTTAGATTCGCTACCGCTGCCGTTAACCACTACAATGGTTCAACCTCAAGGTCTCTCTTTGGTCATGGCTATTTCTTTCGCTGCCAGGAAAAAATTCCTCCCAATACTATCAAATATAGGCAGACGCAGGGCCAAACCTACGGACAATGCTTCGGGTTAGACCAACGTGGCCATCCATCTCCTTATTCTATAGGTCATCCCAAGAATATGGCTCCGGCCCTTTTTGCCGTGGAAGAGTATAACAAGAAAAAGAATGCCAAACTTCATTTTGTGAGAGTTGTCTACGCTAGGCAGATGCTTTATCATGGTGAATTCATTCAAAATGTATACTTTGATGCGATTGATGGGGGTGTGACCGAAATGTACAATGCAAGAGTTCAGAGCAGATTCGGCTGCAATATGAAGCTGATATCATTTAACGGAGGCTTAATTATTGGTATGCCCATTTACCGTCTCTCAAATCTCATTTTGCCTTTGGAAACTCATCTTGTCACACTTTTGCCATCTCGCATTTATCCCTATTCCTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

200

Amino Acids

22.63

Weight (kDa)

9.74

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022323)

Species	Orthologous Gene IDs
malus_domestica	MD03G1041000.v1.1 MD14G1175500.v1.1
pyrus_communis	pycom03g03170 pycom03g03180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	348, 393
AciI	CCGC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	159, 377
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	108, 386, 595
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	44, 472
AluI	AGCT	2 cut(s)	44, 472
Alw26I	GTCTC	2 cut(s)	123, 524
AoxI	GGCC	3 cut(s)	196, 235, 282
ApeKI	GCWGC	5 cut(s)	44, 47, 83, 147, 459
ApoI	RAATTY	2 cut(s)	159, 377
Asp700I	GAANNNNTTC	2 cut(s)	159, 381
AspS9I	GGNCC	2 cut(s)	196, 283
AsuHPI	GGTGA	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	31, 34, 70, 134, 446
BccI	CCATC	4 cut(s)	246, 250, 404, 577
BceAI	ACGGC	2 cut(s)	71, 278
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	123, 524
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	5 cut(s)	45, 48, 84, 148, 460
BlsI	GCNGC	5 cut(s)	46, 49, 85, 149, 461
Bme1390I	CCNGG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	196, 283
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	351, 391
BpuEI	CTTGAG	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	238, 262
BseXI	GCAGC	5 cut(s)	31, 34, 70, 134, 446
BshFI	GGCC	3 cut(s)	198, 237, 284
BsiSI	CCGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	123, 524
BsmBI	CGTCTC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	198, 237, 284
Bso31I	GGTCTC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	429
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	198, 237, 284
BspLI	GGNNCC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	294
BssNAI	GTATAC	1 cut(s)	394
Bst1107I	GTATAC	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	238, 262
BstMAI	GTCTC	2 cut(s)	123, 524
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 290, 456
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	5 cut(s)	31, 34, 70, 134, 446
BstXI	CCANNNNNNTGG	2 cut(s)	101, 274
BstZ17I	GTATAC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	198, 237, 284
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	238, 262
Cfr13I	GGNCC	2 cut(s)	196, 283
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	18, 131, 371
CviJI	RGCY	9 cut(s)	44, 135, 198, 237, 278, 284, 459, 472, 492
CviKI_1	RGCY	9 cut(s)	44, 135, 198, 237, 278, 284, 459, 472, 492
CviQI	GTAC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	3 cut(s)	21, 134, 374
FatI	CATG	3 cut(s)	17, 130, 370
FblI	GTMKAC	2 cut(s)	348, 393
Fnu4HI	GCNGC	5 cut(s)	45, 48, 84, 148, 460
FokI	GGATG	2 cut(s)	225, 249
Fsp4HI	GCNGC	5 cut(s)	45, 48, 84, 148, 460
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	5 cut(s)	45, 48, 84, 148, 460
HaeIII	GGCC	3 cut(s)	198, 237, 284
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	21, 134, 374
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	72, 453
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	91, 349, 394
Hpy188I	TCNGA	2 cut(s)	62, 447
Hpy8I	GTNNAC	3 cut(s)	91, 349, 394
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	50, 437, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 290, 456
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	21, 134, 374
KspAI	GTTAAC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	137, 164, 179, 294
Lsp1109I	GCAGC	5 cut(s)	31, 34, 70, 134, 446
LweI	GCATC	2 cut(s)	351, 391
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	418, 556
MboII	GAAGA	2 cut(s)	17, 311
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	4 cut(s)	53, 159, 377, 495
MluNI	TGGCCA	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	4 cut(s)	56, 121, 174, 482
Mox20I	TGGCCA	1 cut(s)	237
MroXI	GAANNNNTTC	2 cut(s)	159, 381
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	3 cut(s)	90, 483, 494
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	83, 290, 456
NlaIII	CATG	3 cut(s)	21, 134, 374
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	418, 556
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	2 cut(s)	159, 381
PfeI	GAWTC	2 cut(s)	72, 453
PkrI	GCNGC	5 cut(s)	46, 49, 85, 149, 461
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	196, 283
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	90, 483, 494
SatI	GCNGC	5 cut(s)	45, 48, 84, 148, 460
Sau96I	GGNCC	2 cut(s)	196, 283
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	8 cut(s)	46, 67, 113, 119, 206, 235, 262, 474
SfaNI	GCATC	2 cut(s)	351, 391
SfcI	CTRYAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	4 cut(s)	53, 159, 377, 495
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	235
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	4 cut(s)	53, 159, 377, 495
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	72, 453
Tru1I	TTAA	3 cut(s)	90, 483, 494
Tru9I	TTAA	3 cut(s)	90, 483, 494
TseFI	GTSAC	2 cut(s)	418, 556
TseI	GCWGC	5 cut(s)	44, 47, 83, 147, 459
Tsp45I	GTSAC	2 cut(s)	418, 556
TspDTI	ATGAA	3 cut(s)	320, 370, 482
TspGWI	ACGGA	2 cut(s)	222, 501
XapI	RAATTY	2 cut(s)	159, 377
XmiI	GTMKAC	2 cut(s)	348, 393
XmnI	GAANNNNTTC	2 cut(s)	159, 381
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.