pycom03g03170

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
2516957 .. 2517217
261 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g03170.1

Sequence Viewer

Length: 261 bp
ATGTGGAGTAAGTCATCCTGTTGTTTTAACACCAATAGAAAGGCTGTTGCAAACTTGGTCAAGGGTTTTAGATTTGGTATTGCTGCCATCTACCACCACAATGGGTCAATCTCAAGGTCTCTCCGCCGCCGCGAAAAGAGTCCTCATTCGACCAAATCATTGCTCATGCAGGTATTACATTTTGAACCTGATGAACATACTACATGTAGATTTACATCTGTGCACATACCGTGTTCATCTATCTGTTTTAAGTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.95

Weight (kDa)

9.83

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022323)

Species Orthologous Gene IDs
malus_domestica MD03G1041000.v1.1 MD14G1175500.v1.1
pyrus_communis pycom03g03170 pycom03g03180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 124, 127, 130
AfaI GTAC 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 123
Alw44I GTGCAC 1 cut(s) 221
ApaLI GTGCAC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 3 cut(s) 84, 127, 130
BlsI GCNGC 3 cut(s) 85, 128, 131
BmcAI AGTACT 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 214
BseGI GGATG 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 214
BseMI GCAATG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 225
BspACI CCGC 3 cut(s) 124, 127, 130
BspFNI CGCG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 231
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 101
BtsCI GGATG 1 cut(s) 14
BveI ACCTGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 166, 204
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
CviQI GTAC 1 cut(s) 253
EciI GGCGGA 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 169, 207
FaiI YATR 4 cut(s) 167, 198, 205, 227
FatI CATG 2 cut(s) 165, 203
Fnu4HI GCNGC 3 cut(s) 84, 127, 130
Fsp4HI GCNGC 3 cut(s) 84, 127, 130
FspBI CTAG 1 cut(s) 259
GluI GCNGC 3 cut(s) 84, 127, 130
Hin1II CATG 2 cut(s) 169, 207
HinfI GANTC 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 50, 169, 223
Hsp92II CATG 2 cut(s) 169, 207
LpnPI CCDG 3 cut(s) 31, 155, 201
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 1 cut(s) 153
MseI TTAA 2 cut(s) 27, 249
MslI CAYNNNNRTG 1 cut(s) 99
MvnI CGCG 1 cut(s) 132
NlaIII CATG 2 cut(s) 169, 207
NspI RCATGY 1 cut(s) 207
PciI ACATGT 1 cut(s) 203
PkrI GCNGC 3 cut(s) 85, 128, 131
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PscI ACATGT 1 cut(s) 203
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 2 cut(s) 27, 249
SatI GCNGC 3 cut(s) 84, 127, 130
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 148
SduI GDGCHC 1 cut(s) 225
SetI ASST 3 cut(s) 119, 174, 190
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SsiI CCGC 3 cut(s) 124, 127, 130
SspMI CTAG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 149
TatI WGTACW 1 cut(s) 252
TauI GCSGC 2 cut(s) 129, 132
Tru1I TTAA 2 cut(s) 27, 249
Tru9I TTAA 2 cut(s) 27, 249
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 207, 225
VneI GTGCAC 1 cut(s) 221
XceI RCATGY 1 cut(s) 207
XspI CTAG 1 cut(s) 259
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.