MD14G1199700.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
28906456 .. 28908387
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1199700.v1.1.491

Sequence Viewer

Length: 1932 bp
ATGAACACGGCGGAGCAGCTCTGCGTGTCTCTTCTGAGCAAGTGCAAGACCCTCAAAGCCGTGAAGCAAGTTCACGCCTTTGCATCCAAGACGGGCCTCGACGCCCATTCCTTTGTCTTTGGCAAGCTCCTCCTCCACTGCGCCGTCACAATCTCCGACGGTCTCCACTACGGTCGCCGCCTCTTCCTTCATTTTCGAAACCCAGATGCCTTCATGTACAATACTCTCATTCGCGGGCTGGCCGAATCGGATACTCCGCATAATGCGCTTGTTGTGTTTGCTGAAATGCGTCGGAAATTGACTGACCCGATTGATAGCTTCTCTTTCGCGTTCGTACTCAAGGCGGCGGCGAATTGCGGGGATTTGAGAGATGGGATGCGGCTGCATTGTCAAGCTTTGGTTTGTGGGCTTGATACCCATCTTTTTGTTGGGACAACTCTGATTAGTATGTATGCTGAATGTGGGCGTGTTAAGTTTGCTCGACAAGTGTTTGAGGAAATGCGTGAACCAAATGTGGTCGCGTGGAATGCGATTCTTACCGCGTGTTTTCGGTGTGGGGATGCGAAGGGTGCGGAGGCGATGTTTGGCTGGATGCCTTTGAGGAATTTGACGTCTTGGAACATTTTGCTTTCAGGGTATGTGAAAATGGATGAGCTTGAGCTTGCCAAGAAGGCATTTTTGAGGATGCCGATGAAAGATGATGTGTCTTGGAGTACTATGATTGTTGGGTTTGCTCAGAGTGGTTGGTTTGATGAGGCTTTTGGGTTTTTCAGGGAACTACAGCGGGAGGGAATTAGACCAAATGAGGCGAGCTTGACCGGGGTACTCTCTGCGTGTGCACAAGCTGGCGCATTTGAGTTTGGTAAAATTTTACATGGTTTAGTAGAGAAGGCTGGATTACACTGGATGATATCAGTCAATAATGCGCTCCTGGATACCTACTCTAAATCTGGAAATATGGACATGGCTAGGTTGGTCTTTGAAAGAATGCCGGAGAAGAAGAGTATTATTTCTTGGACTTCAATGATAGCAGCGCTTGCAATGCATGGTTATGGCCAAGAAGCAATACAAATTTTCCGTAAGATGGAAATGTCTGGAACTAAGCCTGATGGTATCACCTTCATTTCAGTCTTGTATGCTTGTAGTCATGCTGGTTTGGTTGACGAAGGATGTGAGTATTTCTCTAAGATGAGAGATTTGTATGATATAGAACCAGCTATTGAACATTACGGTTGTATGGTAGATCTATATGGTCGAGCTGGTAAACTGCAGAAGGCCTACGATTTTGTACATGAACTGCCAATATCTCCCAATGCTGTTATTTGGCGCACTCTTCTTGGGGCTTGCAGCATTCATGGTAATGTTGAGTTGGCAGAACAAGTGAAGGAAGCTCTTTCCAAACTTGACCCCGACAATTCTGGTGATCACGTTCTCCTGTCAAATGTATATGCTGTTGCAGGGAAGTGGAAGGATGTTGCTGCTCTAAGAAGATCAATGGCTGACCAGAGGATTAAGAAAGCTCCAGGATGGAGTGTGATTGAAGTTGAACGGGTCATGTATAGTTTTATGGCTGGTAAACAATCAAATAAAATTACAGAAGAGGCTTATGAGAAGCTACGGGGGATAATGTTAAAACTTAGGGTTGAAGGAGGCTATGTTCCAGAGGTTAGGAGTGTTTTGCATGACATAGAAGAAGAGGATAAAGAAGATTCAGTTTTCAGGCACAGTGAGAAACTTGCTGTAGCTTTTGGGTTGGCAAGACAGCGTGAAGGGCAGATTATAAGGATTGTGAAGAATTTACGGGTCTGTAGGGACTGTCATACGGTGATGAAGCTGATTTCTAAGGTTTATGGAGTGGAGATAGTGGTGAGAGATAGAAGCCGTTTTCACTCCTTCAAGGATGGCTCTTGTTCATGCAAAGATTACTGGTGA

Protein Analysis

644

Amino Acids

72.31

Weight (kDa)

8.17

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 233 - 280 4e-08 PPR repeat family
PPR PF01535 235 - 265 3.5e-07 PPR repeat
PPR_2 PF13041 335 - 382 3.3e-08 PPR repeat family
PPR PF01535 337 - 366 5.5e-06 PPR repeat
E_motif PF20431 452 - 514 2.9e-18 E motif
DYW_deaminase PF14432 551 - 643 1.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74630 AT1G74630
fragaria_vesca FvH4_5g14980
malus_domestica MD14G1199700.v1.1
prunus_persica Prupe.5G193000_v2.0.a1
pyrus_communis pycom14g16550
rosa_chinensis RchiOBHm_Chr7g0181341
rosa_laevigata RLG00000005197
rosa_rugosa Rorug06G0440400
rosa_samantha Rh7AG042300 Rh7BG041200 Rh7CG043600
rosa_wichuraiana Rw7G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1781
AatII GACGTC 1 cut(s) 614
AccII CGCG 4 cut(s) 234, 329, 521, 542
AcoI YGGCCR 2 cut(s) 240, 1054
AcsI RAATTY 4 cut(s) 604, 867, 1071, 1795
AcyI GRCGYC 2 cut(s) 102, 611
AfaI GTAC 5 cut(s) 218, 336, 715, 825, 1290
AfeI AGCGCT 1 cut(s) 1035
AfiI CCNNNNNNNGG 1 cut(s) 1084
AgsI TTSAA 7 cut(s) 983, 1023, 1223, 1541, 1547, 1646, 1897
AjnI CCWGG 2 cut(s) 930, 1522
AloI GAACNNNNNNTCC 2 cut(s) 1641, 1673
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 2 cut(s) 33, 167
Alw44I GTGCAC 1 cut(s) 837
Aor51HI AGCGCT 1 cut(s) 1035
AoxI GGCC 4 cut(s) 94, 240, 1054, 1275
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 5 cut(s) 16, 382, 1031, 1347, 1478
ApoI RAATTY 4 cut(s) 604, 867, 1071, 1795
AspLEI GCGC 6 cut(s) 143, 268, 851, 928, 1036, 1329
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 4 cut(s) 1108, 1433, 1837, 1879
AsuII TTCGAA 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 841
BalI TGGCCA 1 cut(s) 1056
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 5 cut(s) 28, 369, 1043, 1359, 1465
BccI CCATC 6 cut(s) 365, 426, 1078, 1103, 1521, 1895
BceAI ACGGC 4 cut(s) 24, 44, 128, 1866
BciT130I CCWGG 2 cut(s) 932, 1524
BciVI GTATCC 2 cut(s) 244, 928
BclI TGATCA 1 cut(s) 1423
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 33, 167
BfaI CTAG 1 cut(s) 969
BfmI CTRYAG 4 cut(s) 779, 1268, 1740, 1807
BfoI RGCGCY 1 cut(s) 1037
BfuI GTATCC 2 cut(s) 244, 928
BglI GCCNNNNNGGC 1 cut(s) 671
BglII AGATCT 1 cut(s) 1243
BisI GCNGC 9 cut(s) 17, 178, 345, 348, 380, 383, 1032, 1348, 1479
BlsI GCNGC 9 cut(s) 18, 179, 346, 349, 381, 384, 1033, 1349, 1480
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 3 cut(s) 820, 932, 1524
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 3 cut(s) 820, 932, 1524
BmsI GCATC 6 cut(s) 92, 196, 366, 550, 582, 675
BplI GAGNNNNNCTC 2 cut(s) 1166, 1198
BpmI CTGGAG 1 cut(s) 1506
Bpu14I TTCGAA 1 cut(s) 196
BpuEI CTTGAG 2 cut(s) 323, 677
BpuMI CCSGG 1 cut(s) 820
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 2 cut(s) 102, 611
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 819
BsaXI ACNNNNNCTCC 4 cut(s) 566, 596, 1641, 1671
Bsc4I CCNNNNNNNGG 1 cut(s) 1084
Bse1I ACTGG 2 cut(s) 908, 1931
Bse3DI GCAATG 1 cut(s) 1047
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 932, 1524
BseDI CCNNGG 1 cut(s) 819
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 1084
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 2 cut(s) 26, 749
BseNI ACTGG 2 cut(s) 908, 1931
BseRI GAGGAG 2 cut(s) 119, 122
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 5 cut(s) 28, 369, 1043, 1359, 1465
Bsh1236I CGCG 4 cut(s) 234, 329, 521, 542
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 4 cut(s) 96, 242, 1056, 1277
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 841
BsiSI CCGG 2 cut(s) 819, 992
BslFI GGGAC 2 cut(s) 445, 1826
BslI CCNNNNNNNGG 1 cut(s) 1084
BsmAI GTCTC 2 cut(s) 33, 167
BsmFI GGGAC 2 cut(s) 445, 1826
BsmI GAATGC 3 cut(s) 532, 993, 1350
BsnI GGCC 4 cut(s) 96, 242, 1056, 1277
Bso31I GGTCTC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 841
Bsp1407I TGTACA 2 cut(s) 216, 1288
Bsp143I GATC 3 cut(s) 1243, 1423, 1490
BspANI GGCC 4 cut(s) 96, 242, 1056, 1277
BspCNI CTCAG 2 cut(s) 27, 748
BspFNI CGCG 4 cut(s) 234, 329, 521, 542
BspMAI CTGCAG 1 cut(s) 1272
BspT104I TTCGAA 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 1047
BsrGI TGTACA 2 cut(s) 216, 1288
BsrI ACTGG 2 cut(s) 908, 1931
BssECI CCNNGG 1 cut(s) 819
BssMI GATC 3 cut(s) 1243, 1423, 1490
BssNI GRCGYC 2 cut(s) 102, 611
Bst2UI CCWGG 2 cut(s) 932, 1524
Bst4CI ACNGT 6 cut(s) 161, 173, 1232, 1727, 1817, 1825
Bst6I CTCTTC 6 cut(s) 36, 188, 995, 1338, 1593, 1689
BstACI GRCGYC 2 cut(s) 102, 611
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstAUI TGTACA 2 cut(s) 216, 1288
BstBI TTCGAA 1 cut(s) 196
BstC8I GCNNGC 8 cut(s) 125, 236, 240, 663, 811, 847, 1038, 1345
BstDEI CTNAG 7 cut(s) 35, 735, 1101, 1185, 1484, 1637, 1842
BstFNI CGCG 4 cut(s) 234, 329, 521, 542
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 6 cut(s) 143, 268, 851, 928, 1036, 1329
BstKTI GATC 3 cut(s) 1246, 1426, 1493
BstMAI GTCTC 2 cut(s) 33, 167
BstMBI GATC 3 cut(s) 1243, 1423, 1490
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 7 cut(s) 265, 527, 569, 671, 1037, 1042, 1771
BstNI CCWGG 2 cut(s) 932, 1524
BstSCI CCNGG 3 cut(s) 818, 930, 1522
BstSFI CTRYAG 4 cut(s) 779, 1268, 1740, 1807
BstSLI GKGCMC 1 cut(s) 841
BstUI CGCG 4 cut(s) 234, 329, 521, 542
BstV1I GCAGC 5 cut(s) 28, 369, 1043, 1359, 1465
BstX2I RGATCY 1 cut(s) 1243
BstYI RGATCY 1 cut(s) 1243
BsuI GTATCC 2 cut(s) 244, 928
BsuRI GGCC 4 cut(s) 96, 242, 1056, 1277
BtgZI GCGATG 1 cut(s) 593
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 136, 901, 1732
Cac8I GCNNGC 8 cut(s) 125, 236, 240, 663, 811, 847, 1038, 1345
CfoI GCGC 6 cut(s) 143, 268, 851, 928, 1036, 1329
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 2 cut(s) 110, 278
Csp6I GTAC 5 cut(s) 217, 335, 714, 824, 1289
CviQI GTAC 5 cut(s) 217, 335, 714, 824, 1289
DdeI CTNAG 7 cut(s) 35, 735, 1101, 1185, 1484, 1637, 1842
DpnI GATC 3 cut(s) 1245, 1425, 1492
DpnII GATC 3 cut(s) 1243, 1423, 1490
EaeI YGGCCR 2 cut(s) 240, 1054
Eam1104I CTCTTC 6 cut(s) 36, 188, 995, 1338, 1593, 1689
EarI CTCTTC 6 cut(s) 36, 188, 995, 1338, 1593, 1689
EciI GGCGGA 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 1277
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 912
Eco47III AGCGCT 1 cut(s) 1035
EcoRII CCWGG 2 cut(s) 930, 1522
EcoRV GATATC 1 cut(s) 912
EcoT22I ATGCAT 1 cut(s) 1047
FaqI GGGAC 2 cut(s) 445, 1826
FauI CCCGC 3 cut(s) 227, 350, 777
FbaI TGATCA 1 cut(s) 1423
Fnu4HI GCNGC 9 cut(s) 17, 178, 345, 348, 380, 383, 1032, 1348, 1479
Fsp4HI GCNGC 9 cut(s) 17, 178, 345, 348, 380, 383, 1032, 1348, 1479
FspBI CTAG 1 cut(s) 969
GlaI GCGC 6 cut(s) 142, 267, 850, 927, 1035, 1328
GluI GCNGC 9 cut(s) 17, 178, 345, 348, 380, 383, 1032, 1348, 1479
GsuI CTGGAG 1 cut(s) 1506
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 4 cut(s) 96, 242, 1056, 1277
HapII CCGG 2 cut(s) 819, 992
HgaI GACGC 2 cut(s) 110, 278
HhaI GCGC 6 cut(s) 143, 268, 851, 928, 1036, 1329
Hin1I GRCGYC 2 cut(s) 102, 611
Hin6I GCGC 6 cut(s) 141, 266, 849, 926, 1034, 1327
HinP1I GCGC 6 cut(s) 141, 266, 849, 926, 1034, 1327
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 3 cut(s) 245, 532, 1709
HpaII CCGG 2 cut(s) 819, 992
HphI GGTGA 4 cut(s) 1108, 1433, 1837, 1879
Hpy166II GTNNAC 6 cut(s) 73, 506, 839, 1162, 1265, 1577
Hpy188I TCNGA 6 cut(s) 36, 157, 250, 294, 441, 738
Hpy188III TCNNGA 3 cut(s) 951, 1095, 1661
Hpy8I GTNNAC 6 cut(s) 73, 506, 839, 1162, 1265, 1577
Hpy99I CGWCG 3 cut(s) 104, 161, 294
HpyCH4III ACNGT 6 cut(s) 161, 173, 1232, 1727, 1817, 1825
HpyCH4IV ACGT 2 cut(s) 611, 1428
HpyF10VI GCNNNNNNNGC 7 cut(s) 265, 527, 569, 671, 1037, 1042, 1771
HpyF3I CTNAG 7 cut(s) 35, 735, 1101, 1185, 1484, 1637, 1842
HpySE526I ACGT 2 cut(s) 611, 1428
Hsp92I GRCGYC 2 cut(s) 102, 611
HspAI GCGC 6 cut(s) 141, 266, 849, 926, 1034, 1327
Ksp22I TGATCA 1 cut(s) 1423
Kzo9I GATC 3 cut(s) 1243, 1423, 1490
LmnI GCTCC 4 cut(s) 13, 132, 933, 1525
Lsp1109I GCAGC 5 cut(s) 28, 369, 1043, 1359, 1465
LweI GCATC 6 cut(s) 92, 196, 366, 550, 582, 675
MaeI CTAG 1 cut(s) 969
MaeII ACGT 2 cut(s) 611, 1428
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 1245, 1425, 1492
MboI GATC 3 cut(s) 1243, 1423, 1490
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 1 cut(s) 841
MlsI TGGCCA 1 cut(s) 1056
MluCI AATT 9 cut(s) 296, 352, 604, 792, 867, 1071, 1414, 1590, 1795
MluNI TGGCCA 1 cut(s) 1056
MmeI TCCRAC 2 cut(s) 180, 272
Mox20I TGGCCA 1 cut(s) 1056
Mph1103I ATGCAT 1 cut(s) 1047
MscI TGGCCA 1 cut(s) 1056
MseI TTAA 3 cut(s) 471, 1512, 1631
MslI CAYNNNNRTG 2 cut(s) 1050, 1359
Msp20I TGGCCA 1 cut(s) 1056
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 2 cut(s) 819, 992
MspR9I CCNGG 3 cut(s) 820, 932, 1524
Mva1269I GAATGC 3 cut(s) 532, 993, 1350
MvaI CCWGG 2 cut(s) 932, 1524
MvnI CGCG 4 cut(s) 234, 329, 521, 542
MwoI GCNNNNNNNGC 7 cut(s) 265, 527, 569, 671, 1037, 1042, 1771
NciI CCSGG 1 cut(s) 820
NdeII GATC 3 cut(s) 1243, 1423, 1490
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 1047
NspV TTCGAA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 1277
PctI GAATGC 3 cut(s) 532, 993, 1350
PfeI GAWTC 3 cut(s) 245, 532, 1709
PfoI TCCNGGA 2 cut(s) 930, 1522
PkrI GCNGC 9 cut(s) 18, 179, 346, 349, 381, 384, 1033, 1349, 1480
PsiI TTATAA 1 cut(s) 1781
Psp6I CCWGG 2 cut(s) 930, 1522
PspGI CCWGG 2 cut(s) 930, 1522
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 1272
PsuI RGATCY 1 cut(s) 1243
RsaI GTAC 5 cut(s) 218, 336, 715, 825, 1290
RsaNI GTAC 5 cut(s) 217, 335, 714, 824, 1289
RseI CAYNNNNRTG 2 cut(s) 1050, 1359
SaqAI TTAA 3 cut(s) 471, 1512, 1631
SatI GCNGC 9 cut(s) 17, 178, 345, 348, 380, 383, 1032, 1348, 1479
Sau3AI GATC 3 cut(s) 1243, 1423, 1490
Sau96I GGNCC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 715
ScrFI CCNGG 3 cut(s) 820, 932, 1524
SduI GDGCHC 1 cut(s) 841
SfaNI GCATC 6 cut(s) 92, 196, 366, 550, 582, 675
SfcI CTRYAG 4 cut(s) 779, 1268, 1740, 1807
SfuI TTCGAA 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 1050, 1359
SmlI CTYRAG 2 cut(s) 338, 656
SmoI CTYRAG 2 cut(s) 338, 656
Sse9I AATT 9 cut(s) 296, 352, 604, 792, 867, 1071, 1414, 1590, 1795
SseBI AGGCCT 1 cut(s) 1277
SspMI CTAG 1 cut(s) 969
StuI AGGCCT 1 cut(s) 1277
StyD4I CCNGG 3 cut(s) 818, 930, 1522
TaaI ACNGT 6 cut(s) 161, 173, 1232, 1727, 1817, 1825
TaiI ACGT 2 cut(s) 614, 1431
TaqI TCGA 4 cut(s) 99, 196, 481, 1255
TasI AATT 9 cut(s) 296, 352, 604, 792, 867, 1071, 1414, 1590, 1795
TatI WGTACW 3 cut(s) 216, 713, 1288
TauI GCSGC 4 cut(s) 180, 347, 350, 382
TfiI GAWTC 3 cut(s) 245, 532, 1709
Tru1I TTAA 3 cut(s) 471, 1512, 1631
Tru9I TTAA 3 cut(s) 471, 1512, 1631
TscAI CASTG 3 cut(s) 143, 908, 1732
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 5 cut(s) 16, 382, 1031, 1347, 1478
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 9 cut(s) 17, 179, 202, 707, 1111, 1308, 1343, 1844, 1902
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 3 cut(s) 143, 908, 1732
VneI GTGCAC 1 cut(s) 837
XapI RAATTY 4 cut(s) 604, 867, 1071, 1795
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 1 cut(s) 969
ZraI GACGTC 1 cut(s) 612
ZrmI AGTACT 1 cut(s) 715
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.