Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G74630 AT1G74630 |
| fragaria_vesca | FvH4_5g14980 |
| malus_domestica | MD14G1199700.v1.1 |
| prunus_persica | Prupe.5G193000_v2.0.a1 |
| pyrus_communis | pycom14g16550 |
| rosa_chinensis | RchiOBHm_Chr7g0181341 |
| rosa_laevigata | RLG00000005197 |
| rosa_rugosa | Rorug06G0440400 |
| rosa_samantha | Rh7AG042300 Rh7BG041200 Rh7CG043600 |
| rosa_wichuraiana | Rw7G003490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 112, 1084 |
| AccBSI | CCGCTC | 1 cut(s) | 572 |
| AccII | CGCG | 3 cut(s) | 143, 329, 542 |
| AccIII | TCCGGA | 1 cut(s) | 1660 |
| AclWI | GGATC | 2 cut(s) | 500, 1121 |
| AcoI | YGGCCR | 1 cut(s) | 348 |
| AcsI | RAATTY | 4 cut(s) | 604, 867, 1414, 1795 |
| AfaI | GTAC | 3 cut(s) | 218, 715, 941 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 112, 142, 357, 1084, 1667 |
| AgsI | TTSAA | 6 cut(s) | 284, 1023, 1223, 1419, 1541, 1897 |
| AjnI | CCWGG | 3 cut(s) | 96, 930, 1522 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1641, 1673 |
| Alw21I | GWGCWC | 2 cut(s) | 841, 1395 |
| Alw26I | GTCTC | 4 cut(s) | 33, 121, 1311, 1866 |
| Alw44I | GTGCAC | 1 cut(s) | 837 |
| AlwI | GGATC | 2 cut(s) | 500, 1121 |
| Aor13HI | TCCGGA | 1 cut(s) | 1660 |
| AoxI | GGCC | 4 cut(s) | 94, 348, 1103, 1275 |
| ApaLI | GTGCAC | 1 cut(s) | 837 |
| ApeKI | GCWGC | 4 cut(s) | 379, 382, 1347, 1478 |
| ApoI | RAATTY | 4 cut(s) | 604, 867, 1414, 1795 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 251, 283 |
| AseI | ATTAAT | 1 cut(s) | 299 |
| AspLEI | GCGC | 3 cut(s) | 143, 161, 291 |
| AsuC2I | CCSGG | 1 cut(s) | 257 |
| AsuHPI | GGTGA | 3 cut(s) | 820, 1108, 1586 |
| AsuII | TTCGAA | 1 cut(s) | 196 |
| BaeGI | GKGCMC | 1 cut(s) | 841 |
| BauI | CACGAG | 1 cut(s) | 613 |
| Bbv12I | GWGCWC | 2 cut(s) | 841, 1395 |
| BbvI | GCAGC | 4 cut(s) | 369, 391, 1359, 1465 |
| BccI | CCATC | 6 cut(s) | 114, 365, 426, 1103, 1521, 1640 |
| BceAI | ACGGC | 4 cut(s) | 162, 1584, 1866, 1918 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1460, 1494 |
| BciT130I | CCWGG | 3 cut(s) | 98, 932, 1524 |
| BcnI | CCSGG | 1 cut(s) | 257 |
| BcoDI | GTCTC | 4 cut(s) | 33, 121, 1311, 1866 |
| BfmI | CTRYAG | 3 cut(s) | 779, 1740, 1807 |
| BfoI | RGCGCY | 1 cut(s) | 162 |
| BglII | AGATCT | 1 cut(s) | 1243 |
| BisI | GCNGC | 6 cut(s) | 345, 348, 380, 383, 1348, 1479 |
| BlsI | GCNGC | 6 cut(s) | 346, 349, 381, 384, 1349, 1480 |
| BmcAI | AGTACT | 1 cut(s) | 715 |
| Bme1390I | CCNGG | 4 cut(s) | 98, 257, 932, 1524 |
| BmrFI | CCNGG | 4 cut(s) | 98, 257, 932, 1524 |
| BmrI | ACTGGG | 1 cut(s) | 828 |
| BmsI | GCATC | 7 cut(s) | 91, 196, 366, 675, 925, 978, 1100 |
| BmuI | ACTGGG | 1 cut(s) | 828 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1166, 1198 |
| BpmI | CTGGAG | 1 cut(s) | 1506 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1616 |
| Bpu14I | TTCGAA | 1 cut(s) | 196 |
| BpuEI | CTTGAG | 3 cut(s) | 323, 677, 1424 |
| BpuMI | CCSGG | 1 cut(s) | 257 |
| Bsa29I | ATCGAT | 1 cut(s) | 1161 |
| BsaBI | GATNNNNATC | 2 cut(s) | 105, 417 |
| BsaI | GGTCTC | 1 cut(s) | 121 |
| BsaJI | CCNNGG | 1 cut(s) | 255 |
| BsaWI | WCCGGW | 1 cut(s) | 1660 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 117, 147, 1613, 1641, 1643, 1671 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 112, 142, 357, 1084, 1667 |
| Bse118I | RCCGGY | 2 cut(s) | 92, 357 |
| Bse1I | ACTGG | 2 cut(s) | 823, 1931 |
| Bse3DI | GCAATG | 1 cut(s) | 1047 |
| Bse8I | GATNNNNATC | 2 cut(s) | 105, 417 |
| BseAI | TCCGGA | 1 cut(s) | 1660 |
| BseBI | CCWGG | 3 cut(s) | 98, 932, 1524 |
| BseCI | ATCGAT | 1 cut(s) | 1161 |
| BseDI | CCNNGG | 1 cut(s) | 255 |
| BseJI | GATNNNNATC | 2 cut(s) | 105, 417 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 112, 142, 357, 1084, 1667 |
| BseMI | GCAATG | 1 cut(s) | 1047 |
| BseMII | CTCAG | 1 cut(s) | 749 |
| BseNI | ACTGG | 2 cut(s) | 823, 1931 |
| BseRI | GAGGAG | 3 cut(s) | 119, 122, 509 |
| BseSI | GKGCMC | 1 cut(s) | 841 |
| BseXI | GCAGC | 4 cut(s) | 369, 391, 1359, 1465 |
| BseYI | CCCAGC | 1 cut(s) | 845 |
| Bsh1236I | CGCG | 3 cut(s) | 143, 329, 542 |
| BshFI | GGCC | 4 cut(s) | 96, 350, 1105, 1277 |
| BshVI | ATCGAT | 1 cut(s) | 1161 |
| BsiHKAI | GWGCWC | 2 cut(s) | 841, 1395 |
| BsiSI | CCGG | 6 cut(s) | 93, 257, 292, 358, 992, 1661 |
| BslFI | GGGAC | 2 cut(s) | 445, 1826 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 112, 142, 357, 1084, 1667 |
| BsmAI | GTCTC | 4 cut(s) | 33, 121, 1311, 1866 |
| BsmFI | GGGAC | 2 cut(s) | 445, 1826 |
| BsmI | GAATGC | 2 cut(s) | 532, 1350 |
| BsnI | GGCC | 4 cut(s) | 96, 350, 1105, 1277 |
| Bso31I | GGTCTC | 1 cut(s) | 121 |
| Bsp119I | TTCGAA | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 2 cut(s) | 841, 1395 |
| Bsp13I | TCCGGA | 1 cut(s) | 1660 |
| Bsp1407I | TGTACA | 1 cut(s) | 216 |
| Bsp143I | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| BspANI | GGCC | 4 cut(s) | 96, 350, 1105, 1277 |
| BspCNI | CTCAG | 1 cut(s) | 748 |
| BspDI | ATCGAT | 1 cut(s) | 1161 |
| BspEI | TCCGGA | 1 cut(s) | 1660 |
| BspFNI | CGCG | 3 cut(s) | 143, 329, 542 |
| BspPI | GGATC | 2 cut(s) | 500, 1121 |
| BspT104I | TTCGAA | 1 cut(s) | 196 |
| BspTNI | GGTCTC | 1 cut(s) | 121 |
| BsrBI | CCGCTC | 1 cut(s) | 572 |
| BsrDI | GCAATG | 1 cut(s) | 1047 |
| BsrFI | RCCGGY | 2 cut(s) | 92, 357 |
| BsrGI | TGTACA | 1 cut(s) | 216 |
| BsrI | ACTGG | 2 cut(s) | 823, 1931 |
| BssAI | RCCGGY | 2 cut(s) | 92, 357 |
| BssECI | CCNNGG | 1 cut(s) | 255 |
| BssMI | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| BssSI | CACGAG | 1 cut(s) | 613 |
| Bst2BI | CACGAG | 1 cut(s) | 613 |
| Bst2UI | CCWGG | 3 cut(s) | 98, 932, 1524 |
| Bst4CI | ACNGT | 5 cut(s) | 61, 1232, 1727, 1817, 1825 |
| Bst6I | CTCTTC | 3 cut(s) | 1338, 1593, 1689 |
| BstAUI | TGTACA | 1 cut(s) | 216 |
| BstBI | TTCGAA | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 6 cut(s) | 85, 175, 481, 630, 663, 1345 |
| BstDEI | CTNAG | 5 cut(s) | 666, 735, 1185, 1616, 1842 |
| BstFNI | CGCG | 3 cut(s) | 143, 329, 542 |
| BstH2I | RGCGCY | 1 cut(s) | 162 |
| BstHHI | GCGC | 3 cut(s) | 143, 161, 291 |
| BstKTI | GATC | 7 cut(s) | 508, 589, 1116, 1161, 1246, 1493, 1863 |
| BstMAI | GTCTC | 4 cut(s) | 33, 121, 1311, 1866 |
| BstMBI | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 93, 480, 527, 671, 1037 |
| BstNI | CCWGG | 3 cut(s) | 98, 932, 1524 |
| BstSCI | CCNGG | 4 cut(s) | 96, 255, 930, 1522 |
| BstSFI | CTRYAG | 3 cut(s) | 779, 1740, 1807 |
| BstSLI | GKGCMC | 1 cut(s) | 841 |
| BstUI | CGCG | 3 cut(s) | 143, 329, 542 |
| BstV1I | GCAGC | 4 cut(s) | 369, 391, 1359, 1465 |
| BstX2I | RGATCY | 1 cut(s) | 1243 |
| BstYI | RGATCY | 1 cut(s) | 1243 |
| Bsu15I | ATCGAT | 1 cut(s) | 1161 |
| BsuRI | GGCC | 4 cut(s) | 96, 350, 1105, 1277 |
| BsuTUI | ATCGAT | 1 cut(s) | 1161 |
| BtsI | GCAGTG | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 4 cut(s) | 136, 1719, 1732, 1830 |
| Cac8I | GCNNGC | 6 cut(s) | 85, 175, 481, 630, 663, 1345 |
| CfoI | GCGC | 3 cut(s) | 143, 161, 291 |
| Cfr10I | RCCGGY | 2 cut(s) | 92, 357 |
| ClaI | ATCGAT | 1 cut(s) | 1161 |
| Csp6I | GTAC | 3 cut(s) | 217, 714, 940 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 498, 533 |
| CviAII | CATG | 9 cut(s) | 214, 404, 875, 964, 1046, 1079, 1148, 1355, 1682 |
| CviQI | GTAC | 3 cut(s) | 217, 714, 940 |
| DdeI | CTNAG | 5 cut(s) | 666, 735, 1185, 1616, 1842 |
| DpnI | GATC | 7 cut(s) | 507, 588, 1115, 1160, 1245, 1492, 1862 |
| DpnII | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| DraI | TTTAAA | 1 cut(s) | 982 |
| EaeI | YGGCCR | 1 cut(s) | 348 |
| Eam1104I | CTCTTC | 3 cut(s) | 1338, 1593, 1689 |
| EarI | CTCTTC | 3 cut(s) | 1338, 1593, 1689 |
| Eco147I | AGGCCT | 2 cut(s) | 1105, 1277 |
| Eco31I | GGTCTC | 1 cut(s) | 121 |
| EcoRII | CCWGG | 3 cut(s) | 96, 930, 1522 |
| EcoT22I | ATGCAT | 1 cut(s) | 1047 |
| FaeI | CATG | 9 cut(s) | 217, 407, 878, 967, 1049, 1082, 1151, 1358, 1685 |
| FaqI | GGGAC | 2 cut(s) | 445, 1826 |
| FatI | CATG | 9 cut(s) | 213, 403, 874, 963, 1045, 1078, 1147, 1354, 1681 |
| FauI | CCCGC | 3 cut(s) | 315, 1024, 1758 |
| Fnu4HI | GCNGC | 6 cut(s) | 345, 348, 380, 383, 1348, 1479 |
| Fsp4HI | GCNGC | 6 cut(s) | 345, 348, 380, 383, 1348, 1479 |
| GlaI | GCGC | 3 cut(s) | 142, 160, 290 |
| GluI | GCNGC | 6 cut(s) | 345, 348, 380, 383, 1348, 1479 |
| GsaI | CCCAGC | 1 cut(s) | 849 |
| GsuI | CTGGAG | 1 cut(s) | 1506 |
| HaeII | RGCGCY | 1 cut(s) | 162 |
| HaeIII | GGCC | 4 cut(s) | 96, 350, 1105, 1277 |
| HapII | CCGG | 6 cut(s) | 93, 257, 292, 358, 992, 1661 |
| HhaI | GCGC | 3 cut(s) | 143, 161, 291 |
| Hin1II | CATG | 9 cut(s) | 217, 407, 878, 967, 1049, 1082, 1151, 1358, 1685 |
| Hin6I | GCGC | 3 cut(s) | 141, 159, 289 |
| HinP1I | GCGC | 3 cut(s) | 141, 159, 289 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 5 cut(s) | 245, 400, 532, 1709, 1803 |
| HpaII | CCGG | 6 cut(s) | 93, 257, 292, 358, 992, 1661 |
| HphI | GGTGA | 3 cut(s) | 820, 1108, 1586 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 839, 961, 1265 |
| Hpy188I | TCNGA | 3 cut(s) | 250, 505, 738 |
| Hpy188III | TCNNGA | 4 cut(s) | 164, 951, 1095, 1661 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 839, 961, 1265 |
| HpyAV | CCTTC | 7 cut(s) | 197, 664, 883, 1129, 1160, 1378, 1903 |
| HpyCH4III | ACNGT | 5 cut(s) | 61, 1232, 1727, 1817, 1825 |
| HpyCH4IV | ACGT | 1 cut(s) | 1428 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 93, 480, 527, 671, 1037 |
| HpyF3I | CTNAG | 5 cut(s) | 666, 735, 1185, 1616, 1842 |
| HpySE526I | ACGT | 1 cut(s) | 1428 |
| Hsp92II | CATG | 9 cut(s) | 217, 407, 878, 967, 1049, 1082, 1151, 1358, 1685 |
| HspAI | GCGC | 3 cut(s) | 141, 159, 289 |
| Kpn2I | TCCGGA | 1 cut(s) | 1660 |
| Kzo9I | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| LmnI | GCTCC | 2 cut(s) | 189, 569 |
| Lsp1109I | GCAGC | 4 cut(s) | 369, 391, 1359, 1465 |
| LweI | GCATC | 7 cut(s) | 91, 196, 366, 675, 925, 978, 1100 |
| MaeII | ACGT | 1 cut(s) | 1428 |
| MaeIII | GTNAC | 2 cut(s) | 145, 1421 |
| MalI | GATC | 7 cut(s) | 507, 588, 1115, 1160, 1245, 1492, 1862 |
| MbiI | CCGCTC | 1 cut(s) | 572 |
| MboI | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| MboII | GAAGA | 7 cut(s) | 1325, 1500, 1610, 1703, 1706, 1718, 1804 |
| MfeI | CAATTG | 2 cut(s) | 352, 1295 |
| MflI | RGATCY | 1 cut(s) | 1243 |
| MhlI | GDGCHC | 2 cut(s) | 841, 1395 |
| MluCI | AATT | 9 cut(s) | 296, 352, 604, 792, 867, 1098, 1295, 1414, 1795 |
| MlyI | GAGTC | 2 cut(s) | 394, 1812 |
| Mph1103I | ATGCAT | 1 cut(s) | 1047 |
| MroI | TCCGGA | 1 cut(s) | 1660 |
| MseI | TTAA | 4 cut(s) | 299, 981, 1512, 1631 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1050, 1359 |
| MspA1I | CMGCKG | 1 cut(s) | 382 |
| MspI | CCGG | 6 cut(s) | 93, 257, 292, 358, 992, 1661 |
| MspR9I | CCNGG | 4 cut(s) | 98, 257, 932, 1524 |
| MunI | CAATTG | 2 cut(s) | 352, 1295 |
| Mva1269I | GAATGC | 2 cut(s) | 532, 1350 |
| MvaI | CCWGG | 3 cut(s) | 98, 932, 1524 |
| MvnI | CGCG | 3 cut(s) | 143, 329, 542 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 93, 480, 527, 671, 1037 |
| NciI | CCSGG | 1 cut(s) | 257 |
| NdeII | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| NlaIII | CATG | 9 cut(s) | 217, 407, 878, 967, 1049, 1082, 1151, 1358, 1685 |
| NmuCI | GTSAC | 2 cut(s) | 145, 1421 |
| NsiI | ATGCAT | 1 cut(s) | 1047 |
| NspV | TTCGAA | 1 cut(s) | 196 |
| PceI | AGGCCT | 2 cut(s) | 1105, 1277 |
| PctI | GAATGC | 2 cut(s) | 532, 1350 |
| PfeI | GAWTC | 3 cut(s) | 245, 532, 1709 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 112, 1084 |
| PfoI | TCCNGGA | 2 cut(s) | 930, 1522 |
| PkrI | GCNGC | 6 cut(s) | 346, 349, 381, 384, 1349, 1480 |
| PleI | GAGTC | 2 cut(s) | 394, 1811 |
| PpsI | GAGTC | 2 cut(s) | 394, 1811 |
| PshBI | ATTAAT | 1 cut(s) | 299 |
| Psp6I | CCWGG | 3 cut(s) | 96, 930, 1522 |
| PspFI | CCCAGC | 1 cut(s) | 845 |
| PspGI | CCWGG | 3 cut(s) | 96, 930, 1522 |
| PsuI | RGATCY | 1 cut(s) | 1243 |
| PvuII | CAGCTG | 1 cut(s) | 382 |
| RsaI | GTAC | 3 cut(s) | 218, 715, 941 |
| RsaNI | GTAC | 3 cut(s) | 217, 714, 940 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1050, 1359 |
| SaqAI | TTAA | 4 cut(s) | 299, 981, 1512, 1631 |
| SatI | GCNGC | 6 cut(s) | 345, 348, 380, 383, 1348, 1479 |
| Sau3AI | GATC | 7 cut(s) | 505, 586, 1113, 1158, 1243, 1490, 1860 |
| ScaI | AGTACT | 1 cut(s) | 715 |
| SchI | GAGTC | 2 cut(s) | 394, 1812 |
| ScrFI | CCNGG | 4 cut(s) | 98, 257, 932, 1524 |
| SduI | GDGCHC | 2 cut(s) | 841, 1395 |
| SfaNI | GCATC | 7 cut(s) | 91, 196, 366, 675, 925, 978, 1100 |
| SfcI | CTRYAG | 3 cut(s) | 779, 1740, 1807 |
| SfuI | TTCGAA | 1 cut(s) | 196 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1050, 1359 |
| SmlI | CTYRAG | 3 cut(s) | 338, 656, 1403 |
| SmoI | CTYRAG | 3 cut(s) | 338, 656, 1403 |
| Sse9I | AATT | 9 cut(s) | 296, 352, 604, 792, 867, 1098, 1295, 1414, 1795 |
| SseBI | AGGCCT | 2 cut(s) | 1105, 1277 |
| StuI | AGGCCT | 2 cut(s) | 1105, 1277 |
| StyD4I | CCNGG | 4 cut(s) | 96, 255, 930, 1522 |
| TaaI | ACNGT | 5 cut(s) | 61, 1232, 1727, 1817, 1825 |
| TaiI | ACGT | 1 cut(s) | 1431 |
| TaqI | TCGA | 5 cut(s) | 165, 196, 303, 1161, 1255 |
| TasI | AATT | 9 cut(s) | 296, 352, 604, 792, 867, 1098, 1295, 1414, 1795 |
| TatI | WGTACW | 2 cut(s) | 216, 713 |
| TauI | GCSGC | 2 cut(s) | 347, 350 |
| TfiI | GAWTC | 3 cut(s) | 245, 532, 1709 |
| Tru1I | TTAA | 4 cut(s) | 299, 981, 1512, 1631 |
| Tru9I | TTAA | 4 cut(s) | 299, 981, 1512, 1631 |
| TscAI | CASTG | 4 cut(s) | 143, 1719, 1732, 1830 |
| TseFI | GTSAC | 2 cut(s) | 145, 1421 |
| TseI | GCWGC | 4 cut(s) | 379, 382, 1347, 1478 |
| Tsp45I | GTSAC | 2 cut(s) | 145, 1421 |
| TspDTI | ATGAA | 9 cut(s) | 17, 179, 202, 707, 1111, 1179, 1343, 1790, 1844 |
| TspRI | CASTG | 4 cut(s) | 143, 1719, 1732, 1830 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 112, 1084 |
| VneI | GTGCAC | 1 cut(s) | 837 |
| VspI | ATTAAT | 1 cut(s) | 299 |
| XapI | RAATTY | 4 cut(s) | 604, 867, 1414, 1795 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 425 |
| ZrmI | AGTACT | 1 cut(s) | 715 |
| Zsp2I | ATGCAT | 1 cut(s) | 1047 |