Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011663

Physical Location & Seq

Genomic Coordinates Reverse (-)

989818 .. 992519

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1017200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCTGTGGAGGAGAAAATCCTCGTTTCGGTTCGGCTGAGGCCATTGAACGACAAGGAGAAGGCCAAGAACGATGTTTCGGATTGGTGCGTCAAGAACAACACCGTCATGTACAACAACAGCCATCCTGATCGCCCCATGTCTCCCTCTGCTTATGGTTTTGACAGAGTATTTGGGTGGGACTGTCCCACGACGAAGGTGTATGATGAGGGAGCTAAAGAGGTTGTGCTTTCAGTCATCAACGGCATCAACTCAACCATTTTTGCCTATGGACAAACAAGCAGTGGAAAAACATACACTATGAAAGGAATCACAGATTATGCAGTTGCAGACATCTATGACTACATTGAGAAACATAGTGATAGGGAATTTGTGTTGAAGTTCTCCGCCATGGAGATCTACAACGAAGCTGTCAGAGACCTCCTCAGCTCCGAGGGTGCTCAACTTAGGCTCCTAGACGATCCTGAGAAAGGAACTGTTGTCGAGAAACTTTCAGAAGAGATTTTGAGAGACCGGAACCACCTAGAGGAACTTCTTTCCGTCTGTGAAGAGGAAGATCGGAGAGACCTCTCTGAACGAAAACTAGCTCAAGATCACATCAGATTTTGCGACTGTTCCGCTCGAGAATATCTAGGCATTCAAAGTTCAAGCAAACTTGCAGCTACTGTGAATTTTGTTGATCTTGCGGGCAGTGAGCGTGTTTCTCAAGCGTTATCAGCTGGTACGAGATTGAAAGAAGGTTGCCACATAAATCGAAGCTTACTGACCCTGGGAACTGTAATTCGCAAATTAAGCAAGGGAAAGAATGGACACGTACCTTACAGAGATTCGAAGCTAACACGGATACTGCAAAACTCGTTGGGAGGCAATGCCAGGACAGCCATCATTTGCACTACTGAGCCCTGCACGAAGTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

307

Amino Acids

34.29

Weight (kDa)

6.13

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	7 - 142	1.3e-19	Microtubule binding
Kinesin	PF00225	12 - 305	1.4e-79	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24170 AT4G24170 AT5G42490 AT5G42490
fragaria_vesca	FvH4_2g39060
malus_domestica	MD15G1017000.v1.1 MD15G1017200.v1.1
prunus_persica	Prupe.1G370500_v2.0.a1
pyrus_communis	pycom15g01480
rosa_chinensis	RchiOBHm_Chr6g0302161
rosa_laevigata	RLG00000011190
rosa_multiflora	Rmu_ssc0000160.1_g000017
rosa_roxburghii	Rroxscaffold_7G00166030
rosa_rugosa	Rorug06G0312700
rosa_samantha	Rh6AG425300 Rh6BG477200 Rh6CG438100 Rh6DG425100
rosa_wichuraiana	Rw6G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	620
AciI	CCGC	3 cut(s)	387, 618, 686
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	368, 670
AfaI	GTAC	3 cut(s)	113, 724, 816
AfiI	CCNNNNNNNGG	3 cut(s)	28, 470, 526
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	5 cut(s)	49, 379, 641, 648, 733
AjnI	CCWGG	2 cut(s)	768, 872
AluBI	AGCT	8 cut(s)	215, 410, 429, 587, 662, 719, 759, 835
AluI	AGCT	8 cut(s)	215, 410, 429, 587, 662, 719, 759, 835
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	4 cut(s)	147, 411, 504, 558
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	2 cut(s)	41, 63
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	368, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AsuII	TTCGAA	1 cut(s)	830
AvaI	CYCGRG	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	442
BbvCI	CCTCAGC	2 cut(s)	38, 425
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	2 cut(s)	132, 890
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	770, 874
BciVI	GTATCC	1 cut(s)	837
BcoDI	GTCTC	4 cut(s)	147, 411, 504, 558
BfaI	CTAG	4 cut(s)	455, 524, 584, 632
BfuI	GTATCC	1 cut(s)	837
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	2 cut(s)	770, 874
BmeT110I	CYCGRG	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	452, 518
BmrFI	CCNGG	2 cut(s)	770, 874
BmsI	GCATC	1 cut(s)	255
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
Bpu10I	CCTNAGC	2 cut(s)	38, 425
Bpu14I	TTCGAA	1 cut(s)	830
BpuEI	CTTGAG	2 cut(s)	573, 690
BsaAI	YACGTR	1 cut(s)	814
BsaI	GGTCTC	3 cut(s)	411, 504, 558
BsaJI	CCNNGG	4 cut(s)	390, 432, 768, 769
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 470, 526
Bse3DI	GCAATG	1 cut(s)	874
BseBI	CCWGG	2 cut(s)	770, 874
BseDI	CCNNGG	4 cut(s)	390, 432, 768, 769
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	28, 470, 526
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	4 cut(s)	29, 439, 456, 888
BseRI	GAGGAG	2 cut(s)	26, 413
BseXI	GCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	889
BshFI	GGCC	2 cut(s)	43, 65
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	171, 194
BslI	CCNNNNNNNGG	3 cut(s)	28, 470, 526
BsmAI	GTCTC	4 cut(s)	147, 411, 504, 558
BsmFI	GGGAC	2 cut(s)	171, 194
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	43, 65
Bso31I	GGTCTC	3 cut(s)	411, 504, 558
BsoBI	CYCGRG	1 cut(s)	621
Bsp119I	TTCGAA	1 cut(s)	830
Bsp1286I	GDGCHC	2 cut(s)	442, 903
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	3 cut(s)	387, 618, 686
BspANI	GGCC	2 cut(s)	43, 65
BspCNI	CTCAG	4 cut(s)	30, 438, 457, 889
BspLI	GGNNCC	2 cut(s)	452, 518
BspPI	GGATC	1 cut(s)	455
BspT104I	TTCGAA	1 cut(s)	830
BspTNI	GGTCTC	3 cut(s)	411, 504, 558
BsrBI	CCGCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	874
BsrGI	TGTACA	1 cut(s)	111
BssECI	CCNNGG	4 cut(s)	390, 432, 768, 769
BssMI	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	770, 874
Bst4CI	ACNGT	6 cut(s)	106, 185, 478, 614, 667, 778
Bst6I	CTCTTC	2 cut(s)	492, 543
BstAUI	TGTACA	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	814
BstBI	TTCGAA	1 cut(s)	830
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	5 cut(s)	38, 425, 446, 465, 897
BstDSI	CCRYGG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	6 cut(s)	133, 399, 463, 559, 595, 682
BstMAI	GTCTC	4 cut(s)	147, 411, 504, 558
BstMBI	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	716, 792, 878
BstNI	CCWGG	2 cut(s)	770, 874
BstSCI	CCNGG	2 cut(s)	768, 872
BstV1I	GCAGC	1 cut(s)	671
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	837
BsuRI	GGCC	2 cut(s)	43, 65
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	2 cut(s)	289, 697
BtsIMutI	CAGTG	2 cut(s)	289, 697
Cac8I	GCNNGC	1 cut(s)	688
CaiI	CAGNNNCTG	1 cut(s)	665
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	112, 723, 815
CviAII	CATG	4 cut(s)	109, 139, 391, 915
CviQI	GTAC	3 cut(s)	112, 723, 815
DdeI	CTNAG	5 cut(s)	38, 425, 446, 465, 897
DpnI	GATC	6 cut(s)	132, 398, 462, 558, 594, 681
DpnII	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
Eam1104I	CTCTTC	2 cut(s)	492, 543
EarI	CTCTTC	2 cut(s)	492, 543
EciI	GGCGGA	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	903
Eco31I	GGTCTC	3 cut(s)	411, 504, 558
Eco88I	CYCGRG	1 cut(s)	621
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	768, 872
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	112, 142, 394, 918
FaqI	GGGAC	2 cut(s)	171, 194
FatI	CATG	4 cut(s)	108, 138, 390, 914
FauI	CCCGC	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	4 cut(s)	455, 524, 584, 632
GluI	GCNGC	1 cut(s)	660
HaeIII	GGCC	2 cut(s)	43, 65
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	4 cut(s)	112, 142, 394, 918
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	2 cut(s)	309, 827
HpaII	CCGG	1 cut(s)	514
Hpy188I	TCNGA	7 cut(s)	82, 416, 433, 496, 561, 574, 602
Hpy188III	TCNNGA	6 cut(s)	94, 128, 464, 484, 590, 623
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	55, 190, 731
HpyCH4III	ACNGT	6 cut(s)	106, 185, 478, 614, 667, 778
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	6 cut(s)	323, 329, 659, 850, 891, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	716, 792, 878
HpyF3I	CTNAG	5 cut(s)	38, 425, 446, 465, 897
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	4 cut(s)	112, 142, 394, 918
Kzo9I	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
LmnI	GCTCC	3 cut(s)	212, 434, 456
LpnPI	CCDG	9 cut(s)	141, 477, 527, 705, 755, 782, 859, 886, 916
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	4 cut(s)	455, 524, 584, 632
MaeII	ACGT	1 cut(s)	813
MalI	GATC	6 cut(s)	132, 398, 462, 558, 594, 681
MbiI	CCGCTC	1 cut(s)	620
MboI	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
MboII	GAAGA	3 cut(s)	509, 560, 566
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	442, 903
MluCI	AATT	4 cut(s)	368, 670, 780, 788
MseI	TTAA	1 cut(s)	791
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	770, 874
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	2 cut(s)	770, 874
MwoI	GCNNNNNNNGC	3 cut(s)	716, 792, 878
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
NlaIII	CATG	4 cut(s)	112, 142, 394, 918
NlaIV	GGNNCC	2 cut(s)	452, 518
NspV	TTCGAA	1 cut(s)	830
PaeR7I	CTCGAG	1 cut(s)	621
PasI	CCCWGGG	1 cut(s)	769
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	309, 827
PkrI	GCNGC	1 cut(s)	661
Ppu21I	YACGTR	1 cut(s)	814
Psp6I	CCWGG	2 cut(s)	768, 872
PspGI	CCWGG	2 cut(s)	768, 872
PspN4I	GGNNCC	2 cut(s)	452, 518
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	113, 724, 816
RsaNI	GTAC	3 cut(s)	112, 723, 815
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	6 cut(s)	130, 396, 460, 556, 592, 679
ScrFI	CCNGG	2 cut(s)	770, 874
SduI	GDGCHC	2 cut(s)	442, 903
SfaNI	GCATC	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	621
SfuI	TTCGAA	1 cut(s)	830
SlaI	CTCGAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	3 cut(s)	588, 621, 705
SmoI	CTYRAG	3 cut(s)	588, 621, 705
Sse9I	AATT	4 cut(s)	368, 670, 780, 788
SsiI	CCGC	3 cut(s)	387, 618, 686
SspMI	CTAG	4 cut(s)	455, 524, 584, 632
StyD4I	CCNGG	2 cut(s)	768, 872
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	6 cut(s)	106, 185, 478, 614, 667, 778
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	4 cut(s)	483, 622, 754, 830
TasI	AATT	4 cut(s)	368, 670, 780, 788
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	309, 827
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	2 cut(s)	289, 697
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	2 cut(s)	529, 856
TspRI	CASTG	2 cut(s)	289, 697
XagI	CCTNNNNNAGG	1 cut(s)	468
XapI	RAATTY	2 cut(s)	368, 670
XhoI	CTCGAG	1 cut(s)	621
XspI	CTAG	4 cut(s)	455, 524, 584, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.