Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011663

Physical Location & Seq

Genomic Coordinates Reverse (-)

7630491 .. 7631977

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGACTGAGGAGGCTGTGAATGAAGAGAAGATTCTTGTTTCGGTTAGGGTGAGACCATTGAATGACAAGGAAAAGGCAAAGAATGACGTTTCCGATTGGGAATGCTTCAACAACACCGTCATTTACAACAGCAACCAACCTGATCGGGCCTCGTCTCCCTCTGCTTATTCCTTTGATAGAGTATTTGGTTACGACTCTTCTACGAAGCAGGTGTATGAAGAGGCAGCTAAGGAGGTTGCTCTTTCAGTCGTCAACGGCATCAACTCAACCATTTTCGCCTATGGACAAACAAGCAGCGGAAAGACGTATACCATGAATGGGGTGACCGAATTTGCTGTTACAGATATATATGATCACATGGAGAGACAAAGTGACCGTGAATTCGTGTTGAAGTTCTCTGCCATGGAGATATATAATGAAGCTGTCAGAGATCTCCTCAGCTCCGAGAATGCTCAACTTAGGCTGCTAGATGATCCAGAGAAAGGTACAGTTGTCGAGAAACTTTCAGAGGAGGTACTGAGAGACCGGAACCACCTGGAGGAGCTTCTTTCCCTCTGCGCAGCACAAAGGAAGATAGGAGAGACCTCTTTGAATGAAACTAGTTCAAGATCTCATCAAATTTTGCGACTGACAATTGAAAGTACTGCCAAACAATTAGAAGGCCTTCAAAGTTCAGGCACTCTTGCTGCTACTGTGAATTTTGTTGATCTTGCGGGCAGCGAGCGTGTCGCTCAGGCATTATCAGCTGGTGCAAGATTGAAAGAAGGTTGTCACATAAATAGAAGTTTACTGACCCTGGGAACTGTAATACGCAAATTAAGGTTTAGTTGTTCTTCCATTTACTCAACAAAGTTCTTGGTTCATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

290

Amino Acids

32.3

Weight (kDa)

5.32

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	12 - 147	5.4e-23	Microtubule binding
Kinesin	PF00225	17 - 275	4.2e-76	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24170 AT4G24170 AT5G42490 AT5G42490
fragaria_vesca	FvH4_2g39060
malus_domestica	MD15G1017000.v1.1 MD15G1017200.v1.1
prunus_persica	Prupe.1G370500_v2.0.a1
pyrus_communis	pycom15g01480
rosa_chinensis	RchiOBHm_Chr6g0302161
rosa_laevigata	RLG00000011190
rosa_multiflora	Rmu_ssc0000160.1_g000017
rosa_roxburghii	Rroxscaffold_7G00166030
rosa_rugosa	Rorug06G0312700
rosa_samantha	Rh6AG425300 Rh6BG477200 Rh6CG438100 Rh6DG425100
rosa_wichuraiana	Rw6G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	871
AarI	CACCTGC	1 cut(s)	202
Acc16I	TGCGCA	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	311
AciI	CCGC	2 cut(s)	300, 716
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	4 cut(s)	332, 383, 621, 700
AfaI	GTAC	3 cut(s)	490, 519, 646
AfiI	CCNNNNNNNGG	3 cut(s)	321, 485, 541
AgsI	TTSAA	8 cut(s)	64, 112, 394, 595, 609, 641, 671, 763
AhlI	ACTAGT	1 cut(s)	602
AjnI	CCWGG	2 cut(s)	537, 798
AluBI	AGCT	5 cut(s)	230, 425, 444, 547, 749
AluI	AGCT	5 cut(s)	230, 425, 444, 547, 749
Alw26I	GTCTC	5 cut(s)	49, 162, 361, 519, 578
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	150, 664
ApeKI	GCWGC	6 cut(s)	227, 297, 466, 563, 689, 720
ApoI	RAATTY	4 cut(s)	332, 383, 621, 700
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	64, 337
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	6 cut(s)	239, 309, 453, 575, 676, 732
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	539, 800
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	5 cut(s)	49, 162, 361, 519, 578
BcuI	ACTAGT	1 cut(s)	602
BfaI	CTAG	2 cut(s)	470, 603
BfuAI	ACCTGC	1 cut(s)	202
BglII	AGATCT	2 cut(s)	433, 611
BisI	GCNGC	6 cut(s)	228, 298, 467, 564, 690, 721
BlsI	GCNGC	6 cut(s)	229, 299, 468, 565, 691, 722
BmcAI	AGTACT	1 cut(s)	646
Bme1390I	CCNGG	2 cut(s)	539, 800
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	533
BmrFI	CCNGG	2 cut(s)	539, 800
BmsI	GCATC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	3 cut(s)	231, 440, 735
BsaI	GGTCTC	3 cut(s)	49, 519, 578
BsaJI	CCNNGG	3 cut(s)	405, 798, 799
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 485, 541
BseBI	CCWGG	2 cut(s)	539, 800
BseDI	CCNNGG	3 cut(s)	405, 798, 799
BseLI	CCNNNNNNNGG	3 cut(s)	321, 485, 541
BseMII	CTCAG	3 cut(s)	454, 512, 749
BseRI	GAGGAG	4 cut(s)	26, 428, 527, 557
BseXI	GCAGC	6 cut(s)	239, 309, 453, 575, 676, 732
BshFI	GGCC	2 cut(s)	152, 666
BsiSI	CCGG	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	321, 485, 541
BsmAI	GTCTC	5 cut(s)	49, 162, 361, 519, 578
BsmBI	CGTCTC	1 cut(s)	162
BsmI	GAATGC	2 cut(s)	110, 457
BsnI	GGCC	2 cut(s)	152, 666
Bso31I	GGTCTC	3 cut(s)	49, 519, 578
Bsp143I	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	2 cut(s)	300, 716
BspANI	GGCC	2 cut(s)	152, 666
BspCNI	CTCAG	3 cut(s)	453, 513, 748
BspLI	GGNNCC	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	470
BspTNI	GGTCTC	3 cut(s)	49, 519, 578
BssECI	CCNNGG	3 cut(s)	405, 798, 799
BssMI	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
BssNAI	GTATAC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	405
Bst1107I	GTATAC	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	539, 800
Bst4CI	ACNGT	5 cut(s)	121, 380, 493, 697, 808
Bst6I	CTCTTC	3 cut(s)	21, 205, 216
BstC8I	GCNNGC	2 cut(s)	718, 725
BstDEI	CTNAG	6 cut(s)	9, 231, 440, 461, 521, 735
BstDSI	CCRYGG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	6 cut(s)	148, 358, 436, 478, 614, 712
BstMAI	GTCTC	5 cut(s)	49, 162, 361, 519, 578
BstMBI	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	2 cut(s)	539, 800
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	537, 798
BstV1I	GCAGC	6 cut(s)	239, 309, 453, 575, 676, 732
BstX2I	RGATCY	2 cut(s)	433, 611
BstYI	RGATCY	2 cut(s)	433, 611
BstZ17I	GTATAC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	152, 666
BtgI	CCRYGG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	718, 725
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	489, 518, 645
CviAII	CATG	3 cut(s)	316, 361, 406
CviJI	RGCY	9 cut(s)	17, 152, 230, 425, 444, 466, 547, 666, 749
CviKI_1	RGCY	9 cut(s)	17, 152, 230, 425, 444, 466, 547, 666, 749
CviQI	GTAC	3 cut(s)	489, 518, 645
DdeI	CTNAG	6 cut(s)	9, 231, 440, 461, 521, 735
DpnI	GATC	6 cut(s)	147, 357, 435, 477, 613, 711
DpnII	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
Eam1104I	CTCTTC	3 cut(s)	21, 205, 216
EarI	CTCTTC	3 cut(s)	21, 205, 216
Eco130I	CCWWGG	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	666
Eco31I	GGTCTC	3 cut(s)	49, 519, 578
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	537, 798
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	3 cut(s)	319, 364, 409
FatI	CATG	3 cut(s)	315, 360, 405
FauI	CCCGC	1 cut(s)	709
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	6 cut(s)	228, 298, 467, 564, 690, 721
Fsp4HI	GCNGC	6 cut(s)	228, 298, 467, 564, 690, 721
FspBI	CTAG	2 cut(s)	470, 603
FspI	TGCGCA	1 cut(s)	562
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	6 cut(s)	228, 298, 467, 564, 690, 721
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	152, 666
HapII	CCGG	1 cut(s)	529
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	3 cut(s)	319, 364, 409
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	34, 197
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	2 cut(s)	64, 337
Hpy166II	GTNNAC	3 cut(s)	256, 312, 791
Hpy188I	TCNGA	4 cut(s)	97, 431, 448, 511
Hpy188III	TCNNGA	3 cut(s)	479, 499, 609
Hpy8I	GTNNAC	3 cut(s)	256, 312, 791
HpyAV	CCTTC	3 cut(s)	656, 677, 761
HpyCH4III	ACNGT	5 cut(s)	121, 380, 493, 697, 808
HpyCH4IV	ACGT	2 cut(s)	90, 308
HpyCH4V	TGCA	1 cut(s)	755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	6 cut(s)	9, 231, 440, 461, 521, 735
HpySE526I	ACGT	2 cut(s)	90, 308
Hsp92II	CATG	3 cut(s)	319, 364, 409
HspAI	GCGC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
LmnI	GCTCC	2 cut(s)	449, 544
Lsp1109I	GCAGC	6 cut(s)	239, 309, 453, 575, 676, 732
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	470, 603
MaeII	ACGT	2 cut(s)	90, 308
MaeIII	GTNAC	5 cut(s)	191, 325, 340, 374, 773
MalI	GATC	6 cut(s)	147, 357, 435, 477, 613, 711
MboI	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
MboII	GAAGA	6 cut(s)	38, 43, 192, 233, 586, 828
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	2 cut(s)	433, 611
MluCI	AATT	7 cut(s)	332, 383, 621, 636, 656, 700, 818
MlyI	GAGTC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	1 cut(s)	821
MspA1I	CMGCKG	2 cut(s)	300, 749
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	2 cut(s)	539, 800
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	2 cut(s)	110, 457
MvaI	CCWGG	2 cut(s)	539, 800
MwoI	GCNNNNNNNGC	1 cut(s)	746
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
NlaIII	CATG	3 cut(s)	319, 364, 409
NlaIV	GGNNCC	1 cut(s)	533
NmuCI	GTSAC	3 cut(s)	325, 374, 773
NsbI	TGCGCA	1 cut(s)	562
PaqCI	CACCTGC	1 cut(s)	202
PasI	CCCWGGG	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	666
PctI	GAATGC	2 cut(s)	110, 457
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	6 cut(s)	229, 299, 468, 565, 691, 722
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	871
Psp6I	CCWGG	2 cut(s)	537, 798
PspEI	GGTNACC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	537, 798
PspN4I	GGNNCC	1 cut(s)	533
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	433, 611
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	490, 519, 646
RsaNI	GTAC	3 cut(s)	489, 518, 645
SaqAI	TTAA	1 cut(s)	821
SatI	GCNGC	6 cut(s)	228, 298, 467, 564, 690, 721
Sau3AI	GATC	6 cut(s)	145, 355, 433, 475, 611, 709
Sau96I	GGNCC	1 cut(s)	150
ScaI	AGTACT	1 cut(s)	646
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	539, 800
SfaNI	GCATC	1 cut(s)	270
SpeI	ACTAGT	1 cut(s)	602
Sse9I	AATT	7 cut(s)	332, 383, 621, 636, 656, 700, 818
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	2 cut(s)	300, 716
SspMI	CTAG	2 cut(s)	470, 603
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	537, 798
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	5 cut(s)	121, 380, 493, 697, 808
TaiI	ACGT	2 cut(s)	93, 311
TaqI	TCGA	1 cut(s)	498
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	7 cut(s)	332, 383, 621, 636, 656, 700, 818
TatI	WGTACW	1 cut(s)	644
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	821
Tru9I	TTAA	1 cut(s)	821
TseFI	GTSAC	3 cut(s)	325, 374, 773
TseI	GCWGC	6 cut(s)	227, 297, 466, 563, 689, 720
Tsp45I	GTSAC	3 cut(s)	325, 374, 773
TspDTI	ATGAA	6 cut(s)	39, 234, 332, 435, 612, 854
XapI	RAATTY	4 cut(s)	332, 383, 621, 700
XmiI	GTMKAC	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	2 cut(s)	470, 603
ZrmI	AGTACT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.