Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013920

Physical Location & Seq

Genomic Coordinates Reverse (-)

1311139 .. 1313543

Gene Structure 2405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1022600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCGACGCAAGTGGAGCCTCCGAACGGGATCGGGTCGAAAGGGAAGCATTACTACTCGATGTGGCAGACGCTGTTTGAGATCGACACCAAGTACGTGCCGATCAAGCCGATCGGGCGGGGAGCGTACGGCATCGTTTGCTCGTCGGTGAACAGGGAGACGAACGAGAAGGTGGCGATCAAGAAGATCAACAATGCGTTCGAGAACCGAATCGACGCACTGCGGACGCTGCGGGAGCTGAAGCTGCTGCAGCACCTCCGGCACGAGAATGTGATTGCTTTGAAGGATGTGATGATGCCGATTCAGAGGAAGAGCTTTAAAGATGTTTACTTGGTGTATGAGCTCATGGATACGGATCTCCACCAGATTATTAAGTCTTCGCAACCGCTTTCGAATGATCACTGCCAGTATTTCCTCTTTCAGCTGCTTCGAGGCCTAAAGTATCTTCATTCTGCAAACATTCTCCATCGTGATTTGAAGCCTGGGAACCTTCTTGTCAATGCCAACTGTGACTTAAAAATATGTGATTTTGGGCTAGCTCGTACCAGCACAGGAAAGGGGCAGTTTATGACTGAGTATGTTGTCACTCGTTGGTACCGTGCCCCTGAGCTCCTGCTCTGCTGTGACAACTATGGAACGTCGATTGATGTGTGGTCTGTTGGGTGCATCTTTGCTGAGCTTCTTGGCCGGAAACCTATCTTCCCTGGTACAGAATGCCTCAACCAGCTCAAACTCATAATTAACATCCTTGGAAGCCAGAGGGAGGAGGATCTCCAATTTATAGACAATCTGAAGGCGAAGAAATACATAAAATCGTTGCCATATTCTATGGGGACCCCCTTTACCCGCCTTTACCCTGATGCTCATCCTCTGGCAATTGATCTACTGCAAAAGATGCTTGTTTTTGATCCATCAAAGAGGATTAGCGTCGCTGAAGCACTCCAACACCCCTACATGTCCCCATTGTATGATCCCAATAATAACCCTCCAGCCGAGGTACCTATTGATCTTGACATAGACGAGGATTTAGGAGAAGAGACGATAAGGGAGATGATGTGGAGGGAAATGCTTCTTTACCATCCCGAAGCTGCTACAGGCAATGCCGCAGTGTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

373

Amino Acids

42.59

Weight (kDa)

6.56

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 319	9.6e-70	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 229	1.6e-31	Protein tyrosine and serine/threonine kinase
Kdo	PF06293	56 - 171	1.9e-07	Lipopolysaccharide kinase (Kdo/WaaP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10210 AT1G10210 AT1G10210 AT1G59580 AT1G59580
fragaria_vesca	FvH4_2g39360
malus_domestica	MD08G1025900.v1.1 MD15G1022600.v1.1
prunus_persica	Prupe.1G374600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301651
rosa_laevigata	RLG00000011236
rosa_multiflora	Rmu_ssc0000452.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166570
rosa_rugosa	Rorug06G0307600
rosa_samantha	Rh6AG420400 Rh6CG433400
rosa_wichuraiana	Rw6G036350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	594, 997
AccB1I	GGYRCC	2 cut(s)	594, 997
AciI	CCGC	6 cut(s)	118, 223, 232, 386, 847, 1104
AclWI	GGATC	5 cut(s)	38, 363, 777, 902, 965
AcoI	YGGCCR	1 cut(s)	685
AcuI	CTGAAG	3 cut(s)	260, 812, 954
AfaI	GTAC	6 cut(s)	95, 128, 544, 596, 709, 999
AfiI	CCNNNNNNNGG	2 cut(s)	26, 763
AflIII	ACRYGT	1 cut(s)	954
AgsI	TTSAA	2 cut(s)	283, 478
AjnI	CCWGG	2 cut(s)	481, 703
Alw21I	GWGCWC	2 cut(s)	345, 612
Alw26I	GTCTC	2 cut(s)	152, 1031
AlwI	GGATC	5 cut(s)	38, 363, 777, 902, 965
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	433, 685
ApeKI	GCWGC	6 cut(s)	229, 244, 247, 250, 424, 1088
Asp700I	GAANNNNTTC	1 cut(s)	1068
Asp718I	GGTACC	2 cut(s)	594, 997
AspS9I	GGNCC	1 cut(s)	834
AsuHPI	GGTGA	1 cut(s)	160
AsuII	TTCGAA	1 cut(s)	392
AsuNHI	GCTAGC	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	834
BaeGI	GKGCMC	1 cut(s)	604
BanI	GGYRCC	2 cut(s)	594, 997
BanII	GRGCYC	2 cut(s)	345, 612
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	345, 612
BbvI	GCAGC	6 cut(s)	216, 231, 234, 262, 411, 1075
BccI	CCATC	3 cut(s)	474, 919, 1086
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	483, 705
BciVI	GTATCC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	152, 1031
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	2 cut(s)	248, 1092
BfuI	GTATCC	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	7 cut(s)	230, 245, 248, 251, 425, 1089, 1104
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	7 cut(s)	231, 246, 249, 252, 426, 1090, 1105
Bme1390I	CCNGG	2 cut(s)	483, 705
Bme18I	GGWCC	1 cut(s)	834
BmgT120I	GGNCC	1 cut(s)	834
BmiI	GGNNCC	6 cut(s)	18, 488, 596, 835, 836, 999
BmrFI	CCNGG	2 cut(s)	483, 705
BmsI	GCATC	5 cut(s)	141, 285, 675, 850, 885
BmtI	GCTAGC	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	972
Bpu10I	CCTNAGC	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	2 cut(s)	354, 864
BsaJI	CCNNGG	4 cut(s)	482, 703, 748, 993
BsaXI	ACNNNNNCTCC	2 cut(s)	1040, 1070
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 763
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	1105
Bse8I	GATNNNNATC	2 cut(s)	354, 864
BseBI	CCWGG	2 cut(s)	483, 705
BseDI	CCNNGG	4 cut(s)	482, 703, 748, 993
BseGI	GGATG	4 cut(s)	292, 744, 865, 1078
BseJI	GATNNNNATC	2 cut(s)	354, 864
BseLI	CCNNNNNNNGG	2 cut(s)	26, 763
BseMI	GCAATG	1 cut(s)	1105
BseMII	CTCAG	3 cut(s)	564, 597, 666
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	779
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	6 cut(s)	216, 231, 234, 262, 411, 1075
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	435, 687
BshNI	GGYRCC	2 cut(s)	594, 997
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	345, 612
BsiSI	CCGG	2 cut(s)	259, 688
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	847, 943
BslI	CCNNNNNNNGG	2 cut(s)	26, 763
BsmAI	GTCTC	2 cut(s)	152, 1031
BsmBI	CGTCTC	2 cut(s)	152, 1031
BsmFI	GGGAC	2 cut(s)	847, 943
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	435, 687
Bsp119I	TTCGAA	1 cut(s)	392
Bsp1286I	GDGCHC	3 cut(s)	345, 604, 612
Bsp1720I	GCTNAGC	1 cut(s)	675
BspACI	CCGC	6 cut(s)	118, 223, 232, 386, 847, 1104
BspANI	GGCC	2 cut(s)	435, 687
BspCNI	CTCAG	3 cut(s)	565, 598, 667
BspLI	GGNNCC	6 cut(s)	18, 488, 596, 835, 836, 999
BspMAI	CTGCAG	1 cut(s)	252
BspOI	GCTAGC	1 cut(s)	539
BspPI	GGATC	5 cut(s)	38, 363, 777, 902, 965
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	392
BspT107I	GGYRCC	2 cut(s)	594, 997
BsrDI	GCAATG	1 cut(s)	1105
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	4 cut(s)	482, 703, 748, 993
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	748
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	483, 705
Bst4CI	ACNGT	2 cut(s)	509, 599
Bst6I	CTCTTC	2 cut(s)	305, 1029
BstAPI	GCANNNNNTGC	2 cut(s)	138, 895
BstBAI	YACGTR	1 cut(s)	97
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	3 cut(s)	573, 606, 675
BstF5I	GGATG	4 cut(s)	292, 744, 865, 1078
BstMAI	GTCTC	2 cut(s)	152, 1031
BstMCI	CGRYCG	1 cut(s)	114
BstNI	CCWGG	2 cut(s)	483, 705
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	2 cut(s)	481, 703
BstSFI	CTRYAG	2 cut(s)	248, 1092
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	6 cut(s)	216, 231, 234, 262, 411, 1075
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	355, 769
BstYI	RGATCY	2 cut(s)	355, 769
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	435, 687
BtsCI	GGATG	4 cut(s)	292, 744, 865, 1078
BtsI	GCAGTG	3 cut(s)	218, 400, 1113
BtsIMutI	CAGTG	3 cut(s)	218, 400, 1113
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	834
CseI	GACGC	5 cut(s)	16, 79, 224, 235, 916
Csp6I	GTAC	6 cut(s)	94, 127, 543, 595, 708, 998
CviAII	CATG	2 cut(s)	346, 955
CviQI	GTAC	6 cut(s)	94, 127, 543, 595, 708, 998
DdeI	CTNAG	3 cut(s)	573, 606, 675
DraI	TTTAAA	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	2 cut(s)	305, 1029
EarI	CTCTTC	2 cut(s)	305, 1029
Ecl136II	GAGCTC	2 cut(s)	343, 610
Eco130I	CCWWGG	1 cut(s)	748
Eco147I	AGGCCT	1 cut(s)	435
Eco24I	GRGCYC	2 cut(s)	345, 612
Eco47I	GGWCC	1 cut(s)	834
Eco53kI	GAGCTC	2 cut(s)	343, 610
Eco57I	CTGAAG	3 cut(s)	260, 812, 954
EcoICRI	GAGCTC	2 cut(s)	343, 610
EcoO109I	RGGNCCY	1 cut(s)	834
EcoRII	CCWGG	2 cut(s)	481, 703
EcoT14I	CCWWGG	1 cut(s)	748
EcoT38I	GRGCYC	2 cut(s)	345, 612
ErhI	CCWWGG	1 cut(s)	748
Esp3I	CGTCTC	2 cut(s)	152, 1031
FaeI	CATG	2 cut(s)	349, 958
FaqI	GGGAC	2 cut(s)	847, 943
FatI	CATG	2 cut(s)	345, 954
FauI	CCCGC	3 cut(s)	111, 225, 854
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	7 cut(s)	230, 245, 248, 251, 425, 1089, 1104
FokI	GGATG	4 cut(s)	299, 731, 852, 1065
FriOI	GRGCYC	2 cut(s)	345, 612
Fsp4HI	GCNGC	7 cut(s)	230, 245, 248, 251, 425, 1089, 1104
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	7 cut(s)	230, 245, 248, 251, 425, 1089, 1104
GsuI	CTGGAG	1 cut(s)	972
HaeIII	GGCC	2 cut(s)	435, 687
HapII	CCGG	2 cut(s)	259, 688
HgaI	GACGC	5 cut(s)	16, 79, 224, 235, 916
Hin1II	CATG	2 cut(s)	349, 958
HinfI	GANTC	2 cut(s)	210, 301
HpaII	CCGG	2 cut(s)	259, 688
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	151, 328
Hpy188I	TCNGA	3 cut(s)	24, 306, 792
Hpy188III	TCNNGA	6 cut(s)	181, 202, 470, 1010, 1082, 1116
Hpy8I	GTNNAC	2 cut(s)	151, 328
Hpy99I	CGWCG	5 cut(s)	10, 148, 218, 643, 932
HpyAV	CCTTC	4 cut(s)	163, 277, 500, 787
HpyCH4III	ACNGT	2 cut(s)	509, 599
HpyCH4IV	ACGT	2 cut(s)	96, 638
HpyCH4V	TGCA	4 cut(s)	250, 455, 666, 889
HpyF3I	CTNAG	3 cut(s)	573, 606, 675
HpySE526I	ACGT	2 cut(s)	96, 638
Hsp92II	CATG	2 cut(s)	349, 958
KflI	GGGWCCC	1 cut(s)	834
KpnI	GGTACC	2 cut(s)	598, 1001
Ksp22I	TGATCA	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	4 cut(s)	16, 122, 235, 615
Lsp1109I	GCAGC	6 cut(s)	216, 231, 234, 262, 411, 1075
LweI	GCATC	5 cut(s)	141, 285, 675, 850, 885
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	2 cut(s)	96, 638
MaeIII	GTNAC	3 cut(s)	509, 583, 623
MboII	GAAGA	7 cut(s)	196, 322, 369, 437, 691, 811, 1046
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	2 cut(s)	355, 769
MhlI	GDGCHC	3 cut(s)	345, 604, 612
MluCI	AATT	3 cut(s)	738, 776, 876
MmeI	TCCRAC	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	1068
MseI	TTAA	4 cut(s)	318, 372, 515, 741
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	2 cut(s)	259, 688
MspR9I	CCNGG	2 cut(s)	483, 705
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	483, 705
NheI	GCTAGC	1 cut(s)	535
NlaIII	CATG	2 cut(s)	349, 958
NlaIV	GGNNCC	6 cut(s)	18, 488, 596, 835, 836, 999
NmeAIII	GCCGAG	1 cut(s)	1018
NmuCI	GTSAC	3 cut(s)	509, 583, 623
NspI	RCATGY	1 cut(s)	958
NspV	TTCGAA	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	435
PciI	ACATGT	1 cut(s)	954
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	595
PctI	GAATGC	1 cut(s)	719
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	2 cut(s)	210, 301
Pfl23II	CGTACG	1 cut(s)	126
PkrI	GCNGC	7 cut(s)	231, 246, 249, 252, 426, 1090, 1105
Ple19I	CGATCG	1 cut(s)	114
Ppu21I	YACGTR	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	834
PscI	ACATGT	1 cut(s)	954
Psp124BI	GAGCTC	2 cut(s)	345, 612
Psp5II	RGGWCCY	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	481, 703
PspGI	CCWGG	2 cut(s)	481, 703
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	6 cut(s)	18, 488, 596, 835, 836, 999
PspPI	GGNCC	1 cut(s)	834
PspPPI	RGGWCCY	1 cut(s)	834
PstI	CTGCAG	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	355, 769
PvuI	CGATCG	1 cut(s)	114
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	6 cut(s)	95, 128, 544, 596, 709, 999
RsaNI	GTAC	6 cut(s)	94, 127, 543, 595, 708, 998
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	2 cut(s)	345, 612
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	318, 372, 515, 741
SatI	GCNGC	7 cut(s)	230, 245, 248, 251, 425, 1089, 1104
Sau96I	GGNCC	1 cut(s)	834
ScrFI	CCNGG	2 cut(s)	483, 705
SduI	GDGCHC	3 cut(s)	345, 604, 612
SfaNI	GCATC	5 cut(s)	141, 285, 675, 850, 885
SfcI	CTRYAG	2 cut(s)	248, 1092
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	3 cut(s)	738, 776, 876
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	6 cut(s)	118, 223, 232, 386, 847, 1104
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	2 cut(s)	345, 612
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	481, 703
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	509, 599
TaiI	ACGT	2 cut(s)	99, 641
TaqI	TCGA	8 cut(s)	38, 59, 84, 201, 213, 392, 430, 641
TasI	AATT	3 cut(s)	738, 776, 876
TauI	GCSGC	1 cut(s)	1106
TfiI	GAWTC	2 cut(s)	210, 301
Tru1I	TTAA	4 cut(s)	318, 372, 515, 741
Tru9I	TTAA	4 cut(s)	318, 372, 515, 741
TscAI	CASTG	3 cut(s)	225, 407, 1113
TseFI	GTSAC	3 cut(s)	509, 583, 623
TseI	GCWGC	6 cut(s)	229, 244, 247, 250, 424, 1088
Tsp45I	GTSAC	3 cut(s)	509, 583, 623
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	3 cut(s)	225, 407, 1113
VpaK11BI	GGWCC	1 cut(s)	834
XceI	RCATGY	1 cut(s)	958
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.