MD15G1031700.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
1922816 .. 1925131
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1031700.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGGCGATTACATTTCTTCATACATTAGCACTTTTCGTTTTATCCATTAACCTCGCAAATTGCCAATCATTTATCGGTGTAAACTACGGCCAAGTTGCCGACAACCTACCGCCACCGTCGTCCACCACGAAGCTGCTCCAGTCAACTTCAATCCAGAAGGTTCGGCTTTACGGTTCCGACCCGGCCATAATCAAAGCCCTGGCGAACACCGGCTTGGGTATCGTCATCGGAGCGTCGAACGGCGACATCCCGGGTCTCGCATCCGACCCCAGTTTCGCCAAGAGCTGGGTTGGAGCTAACGTGTCCCCTTTCTACCCGGCGAGCAACATCATCCTCATCACCGTCGGCAACGAGGTCTTGACTTACGGCGACCAGGGCCTGATTTCTCAGCTGGTCCCGGCGATTAAGAATGTTCAAGACGCCCTCACTTCCCTGTCTCTTGGCGGGAAAATCAAGGTCTCCACCGTACACTCCATGGCGATGCTCAAGCATTCCGAGCCGCCGTCCTCCGCAAGGTTCGACCCGGGTTTTGGTGACGTCATAAAGGAGTTGCTTGGGTTTAATAACGCCACCGGTTCGCCTTTCGCTATCAACCCGTACCCGTATTTCGCGTACCGGAGTGACCCGAGACCCGAGACACTGGCTTTTTGCCTATTTCAGCCGAATAATGGGCGGTTCGACTCCAACACAAATATTAAGTACATGAACATGTTCGATGCTCAGGTGGATGCAATAAGATCGGCATTGGACTCTATAGGCTTCAAGGGGGTGGAAATTGTGGTGGCGGAGACCGGATGGCCGTACAAAGGGGACGACAATGAGGTTGGTCCAAGTGTCCAGAACGCGAAAGCTTATAACGGAAACCTGATTGCGCACCTTCGATCAATGGTTGGGACGCCATTGATGCCGGGAAAGTCTGTGGACACTTACCTCTTTGCACTCTACGATGAGAACTTGAAGCCTGGCCCCGTGTCAGAGAGAGCATTTGGTCTCTTCAAGCCTGACCTCACCATGAATTATGATGTTGGTCTCTCTAAGAGCAGCCAGACCCCTACCACGCCCGCCACGCCATCTACGCCCACCACGCCATCCACGCCCCCCACGCCAGCGAATCCATCGGGGCCAAAGCCAAAGAAAGGATCATATTGTGTGCCCAAGGCCGGCGTATCAGACTCTCAGTTACAGGCTAATATAGATTATGTTTGTGGACATGGTTTTGATTGCACTCCAATTCAACCCGGAGGGTCTTGTTTTGAACCAAACACAGTAAAATCCCATGCTACTTACGCCATGAATCTCCTATATCAAACCGCTGGCAGAAATCCTTGGAACTGCGATTTCTCGCAAACCGCCACACTGACGTCCAACAACCCTAGCTATGATAGCTGCAACTACCCAGGTGGGAGTACTAAAGATGTATGA

Protein Analysis

474

Amino Acids

50.36

Weight (kDa)

6.08

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 342 8e-76 Glycosyl hydrolases family 17
X8 PF07983 382 - 452 3.7e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011759)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
AatII GACGTC 2 cut(s) 540, 1364
Acc16I TGCGCA 1 cut(s) 873
AccB7I CCANNNNNTGG 1 cut(s) 285
AccII CGCG 2 cut(s) 611, 845
AciI CCGC 9 cut(s) 110, 444, 500, 510, 673, 785, 1062, 1311, 1350
AclWI GGATC 1 cut(s) 1147
AcoI YGGCCR 3 cut(s) 88, 183, 797
AcyI GRCGYC 4 cut(s) 420, 537, 896, 1361
AfaI GTAC 6 cut(s) 468, 599, 614, 701, 803, 1408
AfiI CCNNNNNNNGG 7 cut(s) 285, 513, 530, 668, 806, 1136, 1160
AflIII ACRYGT 2 cut(s) 300, 708
AgeI ACCGGT 1 cut(s) 572
AgsI TTSAA 7 cut(s) 150, 416, 763, 958, 997, 1235, 1256
AjnI CCWGG 4 cut(s) 198, 372, 961, 1396
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 7 cut(s) 133, 285, 296, 391, 851, 1377, 1386
AluI AGCT 7 cut(s) 133, 285, 296, 391, 851, 1377, 1386
Alw26I GTCTC 8 cut(s) 260, 441, 463, 622, 629, 782, 995, 1034
AlwI GGATC 1 cut(s) 1147
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 4 cut(s) 250, 523, 625, 632
AoxI GGCC 7 cut(s) 88, 183, 376, 797, 964, 1121, 1158
ApeKI GCWGC 3 cut(s) 133, 1041, 1386
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 512, 544
AsiGI ACCGGT 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 1 cut(s) 874
AspS9I GGNCC 5 cut(s) 376, 394, 827, 965, 1121
AsuC2I CCSGG 9 cut(s) 182, 251, 252, 317, 398, 524, 525, 909, 1239
AsuHPI GGTGA 3 cut(s) 331, 545, 1000
AvaI CYCGRG 4 cut(s) 250, 523, 625, 632
AvaII GGWCC 2 cut(s) 394, 827
BaeGI GKGCMC 1 cut(s) 1155
BbvI GCAGC 3 cut(s) 120, 1053, 1373
BccI CCATC 4 cut(s) 789, 1078, 1096, 1123
BceAI ACGGC 5 cut(s) 103, 256, 382, 487, 784
BcgI CGANNNNNNTGC 2 cut(s) 720, 754
BciT130I CCWGG 4 cut(s) 200, 374, 963, 1398
BcnI CCSGG 9 cut(s) 182, 251, 252, 317, 398, 524, 525, 909, 1239
BcoDI GTCTC 8 cut(s) 260, 441, 463, 622, 629, 782, 995, 1034
BfaI CTAG 1 cut(s) 1374
BfmI CTRYAG 1 cut(s) 753
BisI GCNGC 4 cut(s) 134, 500, 1042, 1387
BlsI GCNGC 4 cut(s) 135, 501, 1043, 1388
BmcAI AGTACT 1 cut(s) 1408
Bme18I GGWCC 2 cut(s) 394, 827
BmeT110I CYCGRG 4 cut(s) 250, 523, 625, 632
BmgT120I GGNCC 5 cut(s) 376, 394, 827, 965, 1121
BmiI GGNNCC 4 cut(s) 175, 396, 967, 1122
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 5 cut(s) 269, 471, 706, 718, 894
BmuI ACTGGG 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 9 cut(s) 182, 251, 252, 317, 398, 524, 525, 909, 1239
BsaHI GRCGYC 4 cut(s) 420, 537, 896, 1361
BsaI GGTCTC 6 cut(s) 260, 463, 622, 782, 995, 1034
BsaJI CCNNGG 8 cut(s) 198, 250, 373, 474, 523, 1155, 1325, 1396
BsaWI WCCGGW 3 cut(s) 572, 615, 791
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 7 cut(s) 285, 513, 530, 668, 806, 1136, 1160
Bse118I RCCGGY 3 cut(s) 209, 572, 1160
Bse1I ACTGG 3 cut(s) 139, 270, 645
BseBI CCWGG 4 cut(s) 200, 374, 963, 1398
BseDI CCNNGG 8 cut(s) 198, 250, 373, 474, 523, 1155, 1325, 1396
BseGI GGATG 6 cut(s) 246, 260, 330, 733, 800, 1088
BseLI CCNNNNNNNGG 7 cut(s) 285, 513, 530, 668, 806, 1136, 1160
BseMII CTCAG 3 cut(s) 401, 734, 1190
BseNI ACTGG 3 cut(s) 139, 270, 645
BseSI GKGCMC 1 cut(s) 1155
BseXI GCAGC 3 cut(s) 120, 1053, 1373
BseYI CCCAGC 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 611, 845
BshFI GGCC 7 cut(s) 90, 185, 378, 799, 966, 1123, 1160
BshTI ACCGGT 1 cut(s) 572
BsiHKCI CYCGRG 4 cut(s) 250, 523, 625, 632
BslFI GGGAC 4 cut(s) 289, 380, 824, 907
BslI CCNNNNNNNGG 7 cut(s) 285, 513, 530, 668, 806, 1136, 1160
BsmAI GTCTC 8 cut(s) 260, 441, 463, 622, 629, 782, 995, 1034
BsmFI GGGAC 4 cut(s) 289, 380, 824, 907
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 7 cut(s) 90, 185, 378, 799, 966, 1123, 1160
Bso31I GGTCTC 6 cut(s) 260, 463, 622, 782, 995, 1034
BsoBI CYCGRG 4 cut(s) 250, 523, 625, 632
Bsp1286I GDGCHC 1 cut(s) 1155
Bsp143I GATC 3 cut(s) 737, 881, 1139
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 9 cut(s) 110, 444, 500, 510, 673, 785, 1062, 1311, 1350
BspANI GGCC 7 cut(s) 90, 185, 378, 799, 966, 1123, 1160
BspCNI CTCAG 3 cut(s) 400, 733, 1189
BspFNI CGCG 2 cut(s) 611, 845
BspLI GGNNCC 4 cut(s) 175, 396, 967, 1122
BspPI GGATC 1 cut(s) 1147
BspTNI GGTCTC 6 cut(s) 260, 463, 622, 782, 995, 1034
BsrFI RCCGGY 3 cut(s) 209, 572, 1160
BsrI ACTGG 3 cut(s) 139, 270, 645
BssAI RCCGGY 3 cut(s) 209, 572, 1160
BssECI CCNNGG 8 cut(s) 198, 250, 373, 474, 523, 1155, 1325, 1396
BssMI GATC 3 cut(s) 737, 881, 1139
BssNI GRCGYC 4 cut(s) 420, 537, 896, 1361
BssT1I CCWWGG 3 cut(s) 474, 1155, 1325
Bst2UI CCWGG 4 cut(s) 200, 374, 963, 1398
Bst4CI ACNGT 5 cut(s) 117, 173, 343, 466, 1267
Bst6I CTCTTC 1 cut(s) 998
BstACI GRCGYC 4 cut(s) 420, 537, 896, 1361
BstC8I GCNNGC 5 cut(s) 322, 1062, 1107, 1162, 1315
BstDEI CTNAG 4 cut(s) 387, 720, 1035, 1176
BstDSI CCRYGG 1 cut(s) 474
BstENI CCTNNNNNAGG 1 cut(s) 511
BstF5I GGATG 6 cut(s) 246, 260, 330, 733, 800, 1088
BstFNI CGCG 2 cut(s) 611, 845
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 3 cut(s) 740, 884, 1142
BstMAI GTCTC 8 cut(s) 260, 441, 463, 622, 629, 782, 995, 1034
BstMBI GATC 3 cut(s) 737, 881, 1139
BstNI CCWGG 4 cut(s) 200, 374, 963, 1398
BstNSI RCATGY 1 cut(s) 712
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 1155
BstUI CGCG 2 cut(s) 611, 845
BstV1I GCAGC 3 cut(s) 120, 1053, 1373
BsuRI GGCC 7 cut(s) 90, 185, 378, 799, 966, 1123, 1160
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 494
BtsCI GGATG 6 cut(s) 246, 260, 330, 733, 800, 1088
BtsIMutI CAGTG 2 cut(s) 638, 1355
Cac8I GCNNGC 5 cut(s) 322, 1062, 1107, 1162, 1315
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 874
Cfr10I RCCGGY 3 cut(s) 209, 572, 1160
Cfr13I GGNCC 5 cut(s) 376, 394, 827, 965, 1121
Cfr9I CCCGGG 2 cut(s) 250, 523
CseI GACGC 3 cut(s) 222, 428, 904
Csp6I GTAC 6 cut(s) 467, 598, 613, 700, 802, 1407
CspAI ACCGGT 1 cut(s) 572
CviAII CATG 7 cut(s) 475, 703, 709, 1012, 1211, 1277, 1291
CviQI GTAC 6 cut(s) 467, 598, 613, 700, 802, 1407
DdeI CTNAG 4 cut(s) 387, 720, 1035, 1176
DpnI GATC 3 cut(s) 739, 883, 1141
DpnII GATC 3 cut(s) 737, 881, 1139
EaeI YGGCCR 3 cut(s) 88, 183, 797
Eam1104I CTCTTC 1 cut(s) 998
EarI CTCTTC 1 cut(s) 998
EciI GGCGGA 1 cut(s) 800
Eco130I CCWWGG 3 cut(s) 474, 1155, 1325
Eco31I GGTCTC 6 cut(s) 260, 463, 622, 782, 995, 1034
Eco47I GGWCC 2 cut(s) 394, 827
Eco88I CYCGRG 4 cut(s) 250, 523, 625, 632
EcoNI CCTNNNNNAGG 1 cut(s) 511
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 4 cut(s) 198, 372, 961, 1396
EcoT14I CCWWGG 3 cut(s) 474, 1155, 1325
ErhI CCWWGG 3 cut(s) 474, 1155, 1325
FaeI CATG 7 cut(s) 478, 706, 712, 1015, 1214, 1280, 1294
FaqI GGGAC 4 cut(s) 289, 380, 824, 907
FatI CATG 7 cut(s) 474, 702, 708, 1011, 1210, 1276, 1290
FauI CCCGC 2 cut(s) 437, 1069
Fnu4HI GCNGC 4 cut(s) 134, 500, 1042, 1387
FokI GGATG 6 cut(s) 233, 247, 317, 740, 807, 1075
Fsp4HI GCNGC 4 cut(s) 134, 500, 1042, 1387
FspBI CTAG 1 cut(s) 1374
FspI TGCGCA 1 cut(s) 873
GlaI GCGC 1 cut(s) 873
GluI GCNGC 4 cut(s) 134, 500, 1042, 1387
GsaI CCCAGC 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 7 cut(s) 90, 185, 378, 799, 966, 1123, 1160
HgaI GACGC 3 cut(s) 222, 428, 904
HhaI GCGC 1 cut(s) 874
Hin1I GRCGYC 4 cut(s) 420, 537, 896, 1361
Hin1II CATG 7 cut(s) 478, 706, 712, 1015, 1214, 1280, 1294
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 5 cut(s) 680, 749, 1111, 1172, 1294
HphI GGTGA 3 cut(s) 331, 545, 1000
Hpy166II GTNNAC 6 cut(s) 82, 123, 144, 469, 922, 1208
Hpy188I TCNGA 6 cut(s) 178, 230, 265, 496, 976, 1171
Hpy188III TCNNGA 4 cut(s) 154, 358, 416, 838
Hpy8I GTNNAC 6 cut(s) 82, 123, 144, 469, 922, 1208
Hpy99I CGWCG 3 cut(s) 121, 238, 347
HpyAV CCTTC 2 cut(s) 151, 887
HpyCH4III ACNGT 5 cut(s) 117, 173, 343, 466, 1267
HpyCH4IV ACGT 3 cut(s) 300, 537, 1361
HpyCH4V TGCA 4 cut(s) 731, 938, 1224, 1389
HpyF3I CTNAG 4 cut(s) 387, 720, 1035, 1176
HpySE526I ACGT 3 cut(s) 300, 537, 1361
Hsp92I GRCGYC 4 cut(s) 420, 537, 896, 1361
Hsp92II CATG 7 cut(s) 478, 706, 712, 1015, 1214, 1280, 1294
HspAI GCGC 1 cut(s) 872
KroI GCCGGC 1 cut(s) 1160
KroNI GCCGGC 1 cut(s) 1162
Kzo9I GATC 3 cut(s) 737, 881, 1139
LmnI GCTCC 3 cut(s) 141, 230, 293
Lsp1109I GCAGC 3 cut(s) 120, 1053, 1373
LweI GCATC 5 cut(s) 269, 471, 706, 718, 894
MaeI CTAG 1 cut(s) 1374
MaeII ACGT 3 cut(s) 300, 537, 1361
MaeIII GTNAC 3 cut(s) 533, 620, 1179
MalI GATC 3 cut(s) 739, 883, 1141
MboI GATC 3 cut(s) 737, 881, 1139
MboII GAAGA 2 cut(s) 8, 985
MhlI GDGCHC 1 cut(s) 1155
MluCI AATT 4 cut(s) 58, 774, 1015, 1230
MlyI GAGTC 3 cut(s) 674, 743, 1166
MmeI TCCRAC 5 cut(s) 201, 271, 288, 708, 1389
MnlI CCTC 9 cut(s) 62, 344, 346, 434, 517, 814, 941, 1016, 1235
MroNI GCCGGC 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 4 cut(s) 48, 405, 561, 696
MslI CAYNNNNRTG 2 cut(s) 479, 707
MspA1I CMGCKG 2 cut(s) 391, 1313
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 4 cut(s) 200, 374, 963, 1398
MvnI CGCG 2 cut(s) 611, 845
NaeI GCCGGC 1 cut(s) 1162
NciI CCSGG 9 cut(s) 182, 251, 252, 317, 398, 524, 525, 909, 1239
NcoI CCATGG 1 cut(s) 474
NdeII GATC 3 cut(s) 737, 881, 1139
NgoMIV GCCGGC 1 cut(s) 1160
NlaIII CATG 7 cut(s) 478, 706, 712, 1015, 1214, 1280, 1294
NlaIV GGNNCC 4 cut(s) 175, 396, 967, 1122
NmuCI GTSAC 2 cut(s) 533, 620
NsbI TGCGCA 1 cut(s) 873
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 490
PdiI GCCGGC 1 cut(s) 1162
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 2 cut(s) 1111, 1294
PflMI CCANNNNNTGG 1 cut(s) 285
PinAI ACCGGT 1 cut(s) 572
PkrI GCNGC 4 cut(s) 135, 501, 1043, 1388
PleI GAGTC 3 cut(s) 674, 743, 1166
PpsI GAGTC 3 cut(s) 674, 743, 1166
PscI ACATGT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 855
Psp6I CCWGG 4 cut(s) 198, 372, 961, 1396
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 4 cut(s) 198, 372, 961, 1396
PspN4I GGNNCC 4 cut(s) 175, 396, 967, 1122
PspPI GGNCC 5 cut(s) 376, 394, 827, 965, 1121
PstNI CAGNNNCTG 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 6 cut(s) 468, 599, 614, 701, 803, 1408
RsaNI GTAC 6 cut(s) 467, 598, 613, 700, 802, 1407
RseI CAYNNNNRTG 2 cut(s) 479, 707
SaqAI TTAA 4 cut(s) 48, 405, 561, 696
SatI GCNGC 4 cut(s) 134, 500, 1042, 1387
Sau3AI GATC 3 cut(s) 737, 881, 1139
Sau96I GGNCC 5 cut(s) 376, 394, 827, 965, 1121
ScaI AGTACT 1 cut(s) 1408
SchI GAGTC 3 cut(s) 674, 743, 1166
SduI GDGCHC 1 cut(s) 1155
SfaNI GCATC 5 cut(s) 269, 471, 706, 718, 894
SfcI CTRYAG 1 cut(s) 753
SinI GGWCC 2 cut(s) 394, 827
SmaI CCCGGG 2 cut(s) 252, 525
SmiMI CAYNNNNRTG 2 cut(s) 479, 707
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 4 cut(s) 58, 774, 1015, 1230
SsiI CCGC 9 cut(s) 110, 444, 500, 510, 673, 785, 1062, 1311, 1350
SspI AATATT 1 cut(s) 694
SspMI CTAG 1 cut(s) 1374
StyI CCWWGG 3 cut(s) 474, 1155, 1325
TaaI ACNGT 5 cut(s) 117, 173, 343, 466, 1267
TaiI ACGT 3 cut(s) 303, 540, 1364
TaqI TCGA 5 cut(s) 236, 519, 678, 714, 880
TasI AATT 4 cut(s) 58, 774, 1015, 1230
TatI WGTACW 2 cut(s) 699, 1406
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 2 cut(s) 1111, 1294
Tru1I TTAA 4 cut(s) 48, 405, 561, 696
Tru9I TTAA 4 cut(s) 48, 405, 561, 696
TscAI CASTG 2 cut(s) 645, 1362
TseFI GTSAC 2 cut(s) 533, 620
TseI GCWGC 3 cut(s) 133, 1041, 1386
Tsp45I GTSAC 2 cut(s) 533, 620
TspDTI ATGAA 4 cut(s) 8, 719, 1028, 1307
TspGWI ACGGA 1 cut(s) 873
TspMI CCCGGG 2 cut(s) 250, 523
TspRI CASTG 2 cut(s) 645, 1362
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 2 cut(s) 394, 827
XagI CCTNNNNNAGG 1 cut(s) 511
XceI RCATGY 1 cut(s) 712
XmaI CCCGGG 2 cut(s) 250, 523
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 1 cut(s) 1374
ZraI GACGTC 2 cut(s) 538, 1362
ZrmI AGTACT 1 cut(s) 1408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.