Rh6DG413100

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
59848705 .. 59850556
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG413100.1

Sequence Viewer

Length: 1227 bp
ATGGCGATCATACTCCTTCACATTGTAGCCTTCTTCGTTATGACTTTCAACGTTGCAAATTGTCAATCCTTTATCGGCGTAAACTACGGTCAAGTCGCCGACAACCTCCCGCCGCCGTCATCCACCGCAAAGCTACTCCAGTCCACCTCAATCCAAAAGGTCCGGCTCTACGGATCCGACCCGGCCATAATCAAAGCGCTAGCCAACACCGGCATCGGAATCGTCATCGGAGCGGCCAACGGCGACATCCCTGCCCTTGCGTCCGACCCGAATTACGCGAGCAACTGGGTCAGCACCAACGTTCTTGCCTTCTACCCGGCAAGCAACATCATCCTCATAACGGTCGGCAACGAGGTCCTGACCTCCGGCGACCAGGGACTGGTGAGTCAACTAGTTCCGGCGATGCAAAATGTCCAAAACGCCCTCAACTCCGCATCTTTGGGCGGGAAAATTAAGGTCTCCACTGTCCATGCCATGTCGGTGCTCAAGCAATCTGAGCCGCCGTCCTCCGGTAGCTTTGATCCTAGTTTTGGTGACGTCATGAAGGCGTTGCTGGCGTTCTGTAGCGCCACCGGTTCGCCTTTTGCAATCAACCCGTACCCGTATTTTGCGTACCGGAGTGACACCCGACCCGAGACCCTGGCTTTCTGCCTCTTCCAACCCAACCAGGGCCGGTTCGACTCCAACTCAAACATCAAGTACATGAACATGTTCGACGCACAGGTGGATGCAATAAAATCTGCATTGAACTCCATGGGGCACGGTAATGTGGAAATTGTGGTTGCGGAGACTGGCTGGCCGTACAAAGGAGACGACAATGAGAGTGCTAGCCAGACCCCCACCACGCCAACTGTGCCCAAGACGCCGACCGTGCCCACCACACCCAAGACACCCTCTGCAGTAGTGCCCAAAACGCCAACAAACCCATCTACTGCGCCGAATCCAAATAAAGGGGTGTGGTGTTTGCCTAAGAAAGGAGTGTCGGAGACTCAGTTGCAGGCTAACATAGATTATGTTTGTGGACATGGTTTTGATTGTAGTCCAATTCAACCGGGCGGGGCTTGTTTTGAACCAAACACGGTGGCTTCCCACGCTGCTTATGCCATGAATATTCTGTATCAAACCGCTGGTCACGATGCTCAGAACTGCGATTTCTCGCAAACTGCTACACTGTCCTCGAACAACCCTAGCTACGATAGCTGCAACTACCCAAGTGGGAGTACCTGA

Protein Analysis

408

Amino Acids

43.05

Weight (kDa)

5.46

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 277 4.4e-59 Glycosyl hydrolases family 17
X8 PF07983 320 - 390 8.4e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011759)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 384
AatII GACGTC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 379
AccBSI CCGCTC 1 cut(s) 233
AccII CGCG 1 cut(s) 278
AclI AACGTT 2 cut(s) 51, 300
AclWI GGATC 3 cut(s) 168, 181, 515
AcoI YGGCCR 3 cut(s) 183, 234, 797
AcyI GRCGYC 2 cut(s) 537, 863
AfaI GTAC 5 cut(s) 599, 614, 701, 803, 1222
AfeI AGCGCT 1 cut(s) 198
AfiI CCNNNNNNNGG 8 cut(s) 340, 379, 509, 530, 668, 806, 950, 974
AflIII ACRYGT 1 cut(s) 708
AgeI ACCGGT 1 cut(s) 572
AgsI TTSAA 4 cut(s) 49, 748, 1049, 1070
AhlI ACTAGT 1 cut(s) 391
AjnI CCWGG 3 cut(s) 372, 639, 666
AluBI AGCT 4 cut(s) 133, 516, 1191, 1200
AluI AGCT 4 cut(s) 133, 516, 1191, 1200
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 5 cut(s) 463, 629, 782, 804, 980
AlwI GGATC 3 cut(s) 168, 181, 515
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 632
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 4 cut(s) 183, 234, 670, 797
ApeKI GCWGC 2 cut(s) 1094, 1200
ArsI GACNNNNNNTTYG 2 cut(s) 1114, 1146
AsiGI ACCGGT 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 3 cut(s) 199, 569, 937
AspS9I GGNCC 3 cut(s) 160, 355, 670
AsuC2I CCSGG 3 cut(s) 182, 317, 1053
AsuHPI GGTGA 2 cut(s) 394, 545
AsuNHI GCTAGC 2 cut(s) 199, 827
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 2 cut(s) 160, 355
BaeGI GKGCMC 4 cut(s) 762, 858, 876, 909
BamHI GGATCC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 2 cut(s) 1081, 1187
BccI CCATC 1 cut(s) 934
BceAI ACGGC 4 cut(s) 100, 256, 487, 784
BcgI CGANNNNNNTGC 4 cut(s) 202, 233, 236, 267
BciT130I CCWGG 3 cut(s) 374, 641, 668
BcnI CCSGG 3 cut(s) 182, 317, 1053
BcoDI GTCTC 5 cut(s) 463, 629, 782, 804, 980
BcuI ACTAGT 1 cut(s) 391
BfaI CTAG 5 cut(s) 200, 392, 525, 828, 1188
BfmI CTRYAG 2 cut(s) 562, 897
BfoI RGCGCY 2 cut(s) 200, 570
BisI GCNGC 5 cut(s) 113, 234, 500, 1095, 1201
BlsI GCNGC 5 cut(s) 114, 235, 501, 1096, 1202
Bme1390I CCNGG 6 cut(s) 182, 317, 374, 641, 668, 1053
Bme18I GGWCC 2 cut(s) 160, 355
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 3 cut(s) 160, 355, 670
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 6 cut(s) 182, 317, 374, 641, 668, 1053
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 5 cut(s) 222, 393, 443, 718, 1126
BmtI GCTAGC 2 cut(s) 203, 831
BmuI ACTGGG 1 cut(s) 295
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 3 cut(s) 182, 317, 1053
BsaHI GRCGYC 2 cut(s) 537, 863
BsaI GGTCTC 2 cut(s) 463, 629
BsaJI CCNNGG 4 cut(s) 373, 639, 667, 753
BsaWI WCCGGW 3 cut(s) 509, 572, 615
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 8 cut(s) 340, 379, 509, 530, 668, 806, 950, 974
Bse118I RCCGGY 3 cut(s) 209, 572, 672
Bse1I ACTGG 4 cut(s) 139, 290, 384, 796
BseBI CCWGG 3 cut(s) 374, 641, 668
BseDI CCNNGG 4 cut(s) 373, 639, 667, 753
BseGI GGATG 4 cut(s) 119, 246, 330, 733
BseLI CCNNNNNNNGG 8 cut(s) 340, 379, 509, 530, 668, 806, 950, 974
BseMII CTCAG 3 cut(s) 486, 1004, 1154
BseNI ACTGG 4 cut(s) 139, 290, 384, 796
BseSI GKGCMC 4 cut(s) 762, 858, 876, 909
BseXI GCAGC 2 cut(s) 1081, 1187
Bsh1236I CGCG 1 cut(s) 278
Bsh1285I CGRYCG 2 cut(s) 345, 870
BshFI GGCC 4 cut(s) 185, 236, 672, 799
BshTI ACCGGT 1 cut(s) 572
BsiEI CGRYCG 2 cut(s) 345, 870
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 632
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 8 cut(s) 340, 379, 509, 530, 668, 806, 950, 974
BsmAI GTCTC 5 cut(s) 463, 629, 782, 804, 980
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 4 cut(s) 185, 236, 672, 799
Bso31I GGTCTC 2 cut(s) 463, 629
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 5 cut(s) 486, 762, 858, 876, 909
Bsp143I GATC 3 cut(s) 6, 173, 520
Bsp19I CCATGG 1 cut(s) 753
BspANI GGCC 4 cut(s) 185, 236, 672, 799
BspCNI CTCAG 3 cut(s) 487, 1003, 1153
BspFNI CGCG 1 cut(s) 278
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 901
BspOI GCTAGC 2 cut(s) 203, 831
BspPI GGATC 3 cut(s) 168, 181, 515
BspTNI GGTCTC 2 cut(s) 463, 629
BsrBI CCGCTC 1 cut(s) 233
BsrFI RCCGGY 3 cut(s) 209, 572, 672
BsrI ACTGG 4 cut(s) 139, 290, 384, 796
BssAI RCCGGY 3 cut(s) 209, 572, 672
BssECI CCNNGG 4 cut(s) 373, 639, 667, 753
BssMI GATC 3 cut(s) 6, 173, 520
BssNI GRCGYC 2 cut(s) 537, 863
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 3 cut(s) 374, 641, 668
Bst4CI ACNGT 8 cut(s) 89, 343, 466, 764, 853, 871, 1081, 1173
Bst6I CTCTTC 1 cut(s) 659
BstACI GRCGYC 2 cut(s) 537, 863
BstC8I GCNNGC 7 cut(s) 201, 280, 322, 555, 797, 829, 999
BstDEI CTNAG 4 cut(s) 495, 969, 990, 1140
BstDSI CCRYGG 1 cut(s) 753
BstENI CCTNNNNNAGG 1 cut(s) 972
BstF5I GGATG 4 cut(s) 119, 246, 330, 733
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 2 cut(s) 200, 570
BstHHI GCGC 3 cut(s) 199, 569, 937
BstKTI GATC 3 cut(s) 9, 176, 523
BstMAI GTCTC 5 cut(s) 463, 629, 782, 804, 980
BstMBI GATC 3 cut(s) 6, 173, 520
BstMCI CGRYCG 2 cut(s) 345, 870
BstMWI GCNNNNNNNGC 9 cut(s) 496, 554, 853, 862, 871, 913, 1091, 1100, 1197
BstNI CCWGG 3 cut(s) 374, 641, 668
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 6 cut(s) 180, 315, 372, 639, 666, 1051
BstSFI CTRYAG 2 cut(s) 562, 897
BstSLI GKGCMC 4 cut(s) 762, 858, 876, 909
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 1081, 1187
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 4 cut(s) 185, 236, 672, 799
BtgI CCRYGG 1 cut(s) 753
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 4 cut(s) 119, 246, 330, 733
BtsIMutI CAGTG 2 cut(s) 462, 1169
Cac8I GCNNGC 7 cut(s) 201, 280, 322, 555, 797, 829, 999
CaiI CAGNNNCTG 1 cut(s) 379
CciI TCATGA 1 cut(s) 540
CfoI GCGC 3 cut(s) 199, 569, 937
Cfr10I RCCGGY 3 cut(s) 209, 572, 672
Cfr13I GGNCC 3 cut(s) 160, 355, 670
CseI GACGC 3 cut(s) 249, 725, 871
Csp6I GTAC 5 cut(s) 598, 613, 700, 802, 1221
CspAI ACCGGT 1 cut(s) 572
CspCI CAANNNNNGTGG 2 cut(s) 1062, 1097
CviAII CATG 8 cut(s) 470, 475, 541, 703, 709, 754, 1025, 1105
CviQI GTAC 5 cut(s) 598, 613, 700, 802, 1221
DdeI CTNAG 4 cut(s) 495, 969, 990, 1140
DpnI GATC 3 cut(s) 8, 175, 522
DpnII GATC 3 cut(s) 6, 173, 520
DrdI GACNNNNNNGTC 1 cut(s) 384
DseDI GACNNNNNNGTC 1 cut(s) 384
EaeI YGGCCR 3 cut(s) 183, 234, 797
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 753
Eco31I GGTCTC 2 cut(s) 463, 629
Eco47I GGWCC 2 cut(s) 160, 355
Eco47III AGCGCT 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 972
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 3 cut(s) 372, 639, 666
EcoT14I CCWWGG 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 8 cut(s) 473, 478, 544, 706, 712, 757, 1028, 1108
FaqI GGGAC 1 cut(s) 390
FatI CATG 8 cut(s) 469, 474, 540, 702, 708, 753, 1024, 1104
FauI CCCGC 3 cut(s) 117, 437, 1049
Fnu4HI GCNGC 5 cut(s) 113, 234, 500, 1095, 1201
FokI GGATG 4 cut(s) 106, 233, 317, 740
Fsp4HI GCNGC 5 cut(s) 113, 234, 500, 1095, 1201
FspBI CTAG 5 cut(s) 200, 392, 525, 828, 1188
GlaI GCGC 3 cut(s) 198, 568, 936
GluI GCNGC 5 cut(s) 113, 234, 500, 1095, 1201
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 2 cut(s) 200, 570
HaeIII GGCC 4 cut(s) 185, 236, 672, 799
HgaI GACGC 3 cut(s) 249, 725, 871
HhaI GCGC 3 cut(s) 199, 569, 937
Hin1I GRCGYC 2 cut(s) 537, 863
Hin1II CATG 8 cut(s) 473, 478, 544, 706, 712, 757, 1028, 1108
Hin6I GCGC 3 cut(s) 197, 567, 935
HinP1I GCGC 3 cut(s) 197, 567, 935
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HinfI GANTC 5 cut(s) 219, 385, 680, 940, 988
HphI GGTGA 2 cut(s) 394, 545
Hpy166II GTNNAC 4 cut(s) 82, 144, 389, 1022
Hpy188I TCNGA 7 cut(s) 178, 218, 230, 265, 496, 985, 1143
Hpy188III TCNNGA 3 cut(s) 358, 541, 1133
Hpy8I GTNNAC 4 cut(s) 82, 144, 389, 1022
Hpy99I CGWCG 1 cut(s) 719
HpyAV CCTTC 4 cut(s) 26, 40, 319, 538
HpyCH4III ACNGT 8 cut(s) 89, 343, 466, 764, 853, 871, 1081, 1173
HpyCH4IV ACGT 3 cut(s) 51, 300, 537
HpyCH4V TGCA 8 cut(s) 56, 406, 587, 731, 743, 899, 997, 1203
HpyF10VI GCNNNNNNNGC 9 cut(s) 496, 554, 853, 862, 871, 913, 1091, 1100, 1197
HpyF3I CTNAG 4 cut(s) 495, 969, 990, 1140
HpySE526I ACGT 3 cut(s) 51, 300, 537
Hsp92I GRCGYC 2 cut(s) 537, 863
Hsp92II CATG 8 cut(s) 473, 478, 544, 706, 712, 757, 1028, 1108
HspAI GCGC 3 cut(s) 197, 567, 935
Kzo9I GATC 3 cut(s) 6, 173, 520
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 2 cut(s) 1081, 1187
LweI GCATC 5 cut(s) 222, 393, 443, 718, 1126
MaeI CTAG 5 cut(s) 200, 392, 525, 828, 1188
MaeII ACGT 3 cut(s) 51, 300, 537
MaeIII GTNAC 3 cut(s) 533, 620, 1130
MalI GATC 3 cut(s) 8, 175, 522
MbiI CCGCTC 1 cut(s) 233
MboI GATC 3 cut(s) 6, 173, 520
MboII GAAGA 2 cut(s) 25, 646
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 5 cut(s) 486, 762, 858, 876, 909
MluCI AATT 5 cut(s) 58, 271, 450, 774, 1044
MlyI GAGTC 3 cut(s) 394, 674, 982
MmeI TCCRAC 5 cut(s) 201, 288, 682, 708, 963
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 3 cut(s) 479, 707, 765
MspA1I CMGCKG 1 cut(s) 1127
MspR9I CCNGG 6 cut(s) 182, 317, 374, 641, 668, 1053
MvaI CCWGG 3 cut(s) 374, 641, 668
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 9 cut(s) 496, 554, 853, 862, 871, 913, 1091, 1100, 1197
NciI CCSGG 3 cut(s) 182, 317, 1053
NcoI CCATGG 1 cut(s) 753
NdeII GATC 3 cut(s) 6, 173, 520
NheI GCTAGC 2 cut(s) 199, 827
NlaIII CATG 8 cut(s) 473, 478, 544, 706, 712, 757, 1028, 1108
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 3 cut(s) 533, 620, 1130
NspI RCATGY 1 cut(s) 712
PagI TCATGA 1 cut(s) 540
PciI ACATGT 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 2 cut(s) 219, 940
PflMI CCANNNNNTGG 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 572
PkrI GCNGC 5 cut(s) 114, 235, 501, 1096, 1202
PleI GAGTC 3 cut(s) 393, 674, 982
PpsI GAGTC 3 cut(s) 393, 674, 982
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 708
Psp1406I AACGTT 2 cut(s) 51, 300
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 3 cut(s) 372, 639, 666
PspGI CCWGG 3 cut(s) 372, 639, 666
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 3 cut(s) 160, 355, 670
PspPPI RGGWCCY 1 cut(s) 355
PstI CTGCAG 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 5 cut(s) 599, 614, 701, 803, 1222
RsaNI GTAC 5 cut(s) 598, 613, 700, 802, 1221
RseI CAYNNNNRTG 3 cut(s) 479, 707, 765
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 5 cut(s) 113, 234, 500, 1095, 1201
Sau3AI GATC 3 cut(s) 6, 173, 520
Sau96I GGNCC 3 cut(s) 160, 355, 670
SchI GAGTC 3 cut(s) 394, 674, 982
ScrFI CCNGG 6 cut(s) 182, 317, 374, 641, 668, 1053
SduI GDGCHC 5 cut(s) 486, 762, 858, 876, 909
SfaNI GCATC 5 cut(s) 222, 393, 443, 718, 1126
SfcI CTRYAG 2 cut(s) 562, 897
SinI GGWCC 2 cut(s) 160, 355
SmiMI CAYNNNNRTG 3 cut(s) 479, 707, 765
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 391
Sse9I AATT 5 cut(s) 58, 271, 450, 774, 1044
SspI AATATT 1 cut(s) 1111
SspMI CTAG 5 cut(s) 200, 392, 525, 828, 1188
StyD4I CCNGG 6 cut(s) 180, 315, 372, 639, 666, 1051
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 8 cut(s) 89, 343, 466, 764, 853, 871, 1081, 1173
TaiI ACGT 3 cut(s) 54, 303, 540
TaqI TCGA 3 cut(s) 678, 714, 1178
TasI AATT 5 cut(s) 58, 271, 450, 774, 1044
TatI WGTACW 1 cut(s) 699
TauI GCSGC 3 cut(s) 115, 236, 502
TfiI GAWTC 2 cut(s) 219, 940
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 469, 1176
TseFI GTSAC 3 cut(s) 533, 620, 1130
TseI GCWGC 2 cut(s) 1094, 1200
Tsp45I GTSAC 3 cut(s) 533, 620, 1130
TspDTI ATGAA 3 cut(s) 557, 719, 1121
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 469, 1176
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 160, 355
XagI CCTNNNNNAGG 1 cut(s) 972
XceI RCATGY 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 5 cut(s) 200, 392, 525, 828, 1188
ZraI GACGTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.