Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

45179327 .. 45184949

Gene Structure 5623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0299600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAGTTTTTTATGAAGAAAGCTTCCACAGCTGAGTTGGATGCTTTCTATCCAGTTAGAGAGGAATGCCGAGTTGAAGTCCCCAAGACCCGATTTAGGCTGAGGGCTGGGAAAACTCTTAGTGCAAGAAGATGGCATGCTGCCTTCTCTGAAGATGGTCATTTGGATATAGCATCAGTGCTTAGACGAATCCAACGAGGGGGCATCCATCCTGCAATTAAAGGTGTAGTCTGGGAATTCTTGTTAGGTTGTTTTGATCCAAGTAGCACCTTTGATGAACGGAATGATCTCAGGCAGCAGCGAAGGGAGATGTATGTCAGATTGAAAGCTGAATGCAATAAGATGGTTCCAGTTATTGGTAGTGGAAAATTTATTACAACACCGCTGGTCACGGATGATGGCGATCCAATAGATGGAGCACCAAATGGAGCAAGGCATGATGTTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTCTTGCATCAAATTGGTTTGGACGTTGTTCGCACTGATCGGACACTTGTATTTTATGAGAGTGAAACTAATCAGGCAAAACTTTGGGAAATTCTTTCAGTTTATGCTTGGATGGACAACGATATTGGTTATGTTCAAGGAATGAATGATATATGCTCGCCAATTGTCATTCTCATTGAAAATCACGCAGATGCATTTTGGTGTTTCGAACGTGCGATGCGAAAGCTGAGAGAAAATTTTAGGTGCACTTCTACTTCGATGGGGGTGCAATCTCAGCTGGCTACGCTCTCCCAAGTAATCAGAACTATTGATCCTAAACTTCATCAACACCTTGAGGAACTAGATGGTGGGGAGTATTTATTTGCATTCCGCATGCTGATGGTGCTGTTCCGAAGAGAGTTTTCCTTTGTGGATTCACTGTATCTTTGGGAGGTGAGGATGAAACTGGACTTATATTTCCATCCAGATTGGTTTCAGCTGATGTGGGCCATGGAATACAACCCAAACATTTTCTCATCGTACGAAACATCAAGCGCTGGTACTACACCACCTAATGCAAGTGACAAAGAACTAAAGGCATTTGGCAAGTTTGAGAGAAATAATGTCAAAACTGGATACACAGAACAACATGGTGCACTTTCCGTATTTCTTGTTGCCAGTGTTCTTGAGACCAAAAACAAGCAACTTTTAAAAAATGCCAAGGGTCTGGACGATGTTGTCAATATCTTAGGCGACATAACAGGGAATCTGGATGCTAGAAAGGCATGTAATGAGGCATTGAAGATTCACAAAAAGTACCTGAAGTTGCACTTGCAGAATGTGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

434

Amino Acids

50.0

Weight (kDa)

8.06

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	150 - 303	1.2e-34	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	184 - 300	2e-09	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1190
AccB7I	CCANNNNNTGG	2 cut(s)	356, 413
AciI	CCGC	2 cut(s)	383, 844
AclWI	GGATC	3 cut(s)	251, 398, 779
AcsI	RAATTY	4 cut(s)	236, 368, 564, 709
AcuI	CTGAAG	2 cut(s)	171, 1295
AfaI	GTAC	3 cut(s)	995, 1015, 1271
AfeI	AGCGCT	1 cut(s)	1009
AfiI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
AgsI	TTSAA	5 cut(s)	77, 325, 611, 653, 1255
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	7 cut(s)	23, 32, 329, 472, 700, 751, 952
AluI	AGCT	7 cut(s)	23, 32, 329, 472, 700, 751, 952
Alw21I	GWGCWC	3 cut(s)	421, 722, 1111
Alw26I	GTCTC	1 cut(s)	1136
Alw44I	GTGCAC	2 cut(s)	718, 1107
AlwI	GGATC	3 cut(s)	251, 398, 779
Aor51HI	AGCGCT	1 cut(s)	1009
AoxI	GGCC	1 cut(s)	960
ApaLI	GTGCAC	2 cut(s)	718, 1107
ApeKI	GCWGC	3 cut(s)	140, 295, 298
ApoI	RAATTY	4 cut(s)	236, 368, 564, 709
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	1010
AspS9I	GGNCC	1 cut(s)	960
AsuHPI	GGTGA	1 cut(s)	919
AsuII	TTCGAA	1 cut(s)	681
BaeGI	GKGCMC	2 cut(s)	722, 1111
Bbv12I	GWGCWC	3 cut(s)	421, 722, 1111
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	127, 307, 310
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciVI	GTATCC	1 cut(s)	1082
BcoDI	GTCTC	1 cut(s)	1136
BfaI	CTAG	2 cut(s)	815, 1230
BfoI	RGCGCY	1 cut(s)	1011
BfuI	GTATCC	1 cut(s)	1082
BisI	GCNGC	3 cut(s)	141, 296, 299
BlsI	GCNGC	3 cut(s)	142, 297, 300
BmgT120I	GGNCC	1 cut(s)	960
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	7 cut(s)	31, 182, 213, 490, 655, 681, 1216
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	2 cut(s)	827, 1160
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	1136
BsaJI	CCNNGG	2 cut(s)	963, 1173
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
Bse1I	ACTGG	5 cut(s)	53, 350, 924, 1090, 1131
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	963, 1173
BseGI	GGATG	8 cut(s)	46, 204, 208, 400, 591, 918, 934, 1231
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
BseMII	CTCAG	5 cut(s)	24, 92, 304, 692, 761
BseNI	ACTGG	5 cut(s)	53, 350, 924, 1090, 1131
BseSI	GKGCMC	2 cut(s)	722, 1111
BseXI	GCAGC	3 cut(s)	127, 307, 310
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	962
BsiHKAI	GWGCWC	3 cut(s)	421, 722, 1111
BsiWI	CGTACG	1 cut(s)	993
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
BsmAI	GTCTC	1 cut(s)	1136
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	3 cut(s)	71, 338, 839
BsnI	GGCC	1 cut(s)	962
Bso31I	GGTCTC	1 cut(s)	1136
Bsp119I	TTCGAA	1 cut(s)	681
Bsp1286I	GDGCHC	3 cut(s)	421, 722, 1111
Bsp143I	GATC	5 cut(s)	256, 286, 403, 511, 784
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	2 cut(s)	383, 844
BspANI	GGCC	1 cut(s)	962
BspCNI	CTCAG	5 cut(s)	25, 93, 303, 693, 760
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	251, 398, 779
BspT104I	TTCGAA	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	1136
BsrI	ACTGG	5 cut(s)	53, 350, 924, 1090, 1131
BssECI	CCNNGG	2 cut(s)	963, 1173
BssMI	GATC	5 cut(s)	256, 286, 403, 511, 784
BssT1I	CCWWGG	2 cut(s)	963, 1173
Bst4CI	ACNGT	1 cut(s)	894
Bst6I	CTCTTC	1 cut(s)	862
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	4 cut(s)	138, 632, 753, 848
BstDEI	CTNAG	8 cut(s)	33, 101, 119, 182, 290, 701, 747, 1201
BstDSI	CCRYGG	1 cut(s)	963
BstF5I	GGATG	8 cut(s)	46, 204, 208, 400, 591, 918, 934, 1231
BstH2I	RGCGCY	1 cut(s)	1011
BstHHI	GCGC	1 cut(s)	1010
BstKTI	GATC	5 cut(s)	259, 289, 406, 514, 787
BstMAI	GTCTC	1 cut(s)	1136
BstMBI	GATC	5 cut(s)	256, 286, 403, 511, 784
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 478, 748, 757, 856, 1235
BstNSI	RCATGY	3 cut(s)	140, 850, 1242
BstSLI	GKGCMC	2 cut(s)	722, 1111
BstV1I	GCAGC	3 cut(s)	127, 307, 310
BstXI	CCANNNNNNTGG	1 cut(s)	1180
BsuI	GTATCC	1 cut(s)	1082
BsuRI	GGCC	1 cut(s)	962
BtgI	CCRYGG	1 cut(s)	963
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	8 cut(s)	46, 204, 208, 400, 591, 918, 934, 1231
BtsIMutI	CAGTG	5 cut(s)	183, 470, 507, 890, 1138
Cac8I	GCNNGC	4 cut(s)	138, 632, 753, 848
CfoI	GCGC	1 cut(s)	1010
Cfr13I	GGNCC	1 cut(s)	960
Csp6I	GTAC	3 cut(s)	994, 1014, 1270
CviAII	CATG	6 cut(s)	137, 437, 847, 964, 1103, 1239
CviQI	GTAC	3 cut(s)	994, 1014, 1270
DdeI	CTNAG	8 cut(s)	33, 101, 119, 182, 290, 701, 747, 1201
DpnI	GATC	5 cut(s)	258, 288, 405, 513, 786
DpnII	GATC	5 cut(s)	256, 286, 403, 511, 784
DraI	TTTAAA	1 cut(s)	1164
DrdI	GACNNNNNNGTC	1 cut(s)	1190
DseDI	GACNNNNNNGTC	1 cut(s)	1190
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco130I	CCWWGG	2 cut(s)	963, 1173
Eco31I	GGTCTC	1 cut(s)	1136
Eco47III	AGCGCT	1 cut(s)	1009
Eco57I	CTGAAG	2 cut(s)	171, 1295
EcoRI	GAATTC	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	963, 1173
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	963, 1173
FaeI	CATG	6 cut(s)	140, 440, 850, 967, 1106, 1242
FalI	AAGNNNNNCTT	4 cut(s)	461, 493, 1268, 1300
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	6 cut(s)	136, 436, 846, 963, 1102, 1238
Fnu4HI	GCNGC	3 cut(s)	141, 296, 299
FokI	GGATG	8 cut(s)	53, 191, 195, 407, 598, 921, 925, 1238
Fsp4HI	GCNGC	3 cut(s)	141, 296, 299
FspBI	CTAG	2 cut(s)	815, 1230
GlaI	GCGC	1 cut(s)	1009
GluI	GCNGC	3 cut(s)	141, 296, 299
GsaI	CCCAGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	1011
HaeIII	GGCC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	1010
Hin1II	CATG	6 cut(s)	140, 440, 850, 967, 1106, 1242
Hin6I	GCGC	1 cut(s)	1008
HinP1I	GCGC	1 cut(s)	1008
HindIII	AAGCTT	2 cut(s)	21, 470
HinfI	GANTC	5 cut(s)	189, 460, 887, 1219, 1258
HphI	GGTGA	1 cut(s)	919
Hpy166II	GTNNAC	2 cut(s)	720, 1109
Hpy188I	TCNGA	6 cut(s)	151, 320, 448, 516, 776, 866
Hpy188III	TCNNGA	4 cut(s)	938, 1139, 1181, 1223
Hpy8I	GTNNAC	2 cut(s)	720, 1109
HpyAV	CCTTC	2 cut(s)	154, 297
HpyCH4III	ACNGT	1 cut(s)	894
HpyCH4IV	ACGT	2 cut(s)	498, 685
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 478, 748, 757, 856, 1235
HpyF3I	CTNAG	8 cut(s)	33, 101, 119, 182, 290, 701, 747, 1201
HpySE526I	ACGT	2 cut(s)	498, 685
Hsp92II	CATG	6 cut(s)	140, 440, 850, 967, 1106, 1242
HspAI	GCGC	1 cut(s)	1008
Kzo9I	GATC	5 cut(s)	256, 286, 403, 511, 784
LmnI	GCTCC	2 cut(s)	416, 428
Lsp1109I	GCAGC	3 cut(s)	127, 307, 310
LweI	GCATC	7 cut(s)	31, 182, 213, 490, 655, 681, 1216
MaeI	CTAG	2 cut(s)	815, 1230
MaeII	ACGT	2 cut(s)	498, 685
MaeIII	GTNAC	2 cut(s)	388, 1034
MalI	GATC	5 cut(s)	258, 288, 405, 513, 786
MboI	GATC	5 cut(s)	256, 286, 403, 511, 784
MboII	GAAGA	5 cut(s)	28, 141, 164, 879, 1267
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	3 cut(s)	421, 722, 1111
MluCI	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
MmeI	TCCRAC	2 cut(s)	18, 217
MnlI	CCTC	7 cut(s)	55, 96, 191, 802, 898, 903, 1240
Mph1103I	ATGCAT	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	2 cut(s)	219, 1163
MslI	CAYNNNNRTG	3 cut(s)	663, 673, 851
MspA1I	CMGCKG	4 cut(s)	32, 385, 751, 952
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	3 cut(s)	71, 338, 839
MwoI	GCNNNNNNNGC	6 cut(s)	29, 478, 748, 757, 856, 1235
NcoI	CCATGG	1 cut(s)	963
NdeII	GATC	5 cut(s)	256, 286, 403, 511, 784
NlaIII	CATG	6 cut(s)	140, 440, 850, 967, 1106, 1242
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	388, 1034
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	3 cut(s)	140, 850, 1242
NspV	TTCGAA	1 cut(s)	681
PaeI	GCATGC	2 cut(s)	140, 850
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 691
PctI	GAATGC	3 cut(s)	71, 338, 839
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	5 cut(s)	189, 460, 887, 1219, 1258
Pfl23II	CGTACG	1 cut(s)	993
PflMI	CCANNNNNTGG	2 cut(s)	356, 413
PkrI	GCNGC	3 cut(s)	142, 297, 300
PspFI	CCCAGC	1 cut(s)	107
PspLI	CGTACG	1 cut(s)	993
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	960
PvuII	CAGCTG	3 cut(s)	32, 751, 952
RsaI	GTAC	3 cut(s)	995, 1015, 1271
RsaNI	GTAC	3 cut(s)	994, 1014, 1270
RseI	CAYNNNNRTG	3 cut(s)	663, 673, 851
SaqAI	TTAA	2 cut(s)	219, 1163
SatI	GCNGC	3 cut(s)	141, 296, 299
Sau3AI	GATC	5 cut(s)	256, 286, 403, 511, 784
Sau96I	GGNCC	1 cut(s)	960
SduI	GDGCHC	3 cut(s)	421, 722, 1111
SfaNI	GCATC	7 cut(s)	31, 182, 213, 490, 655, 681, 1216
SfuI	TTCGAA	1 cut(s)	681
SmiMI	CAYNNNNRTG	3 cut(s)	663, 673, 851
SmlI	CTYRAG	2 cut(s)	806, 1139
SmoI	CTYRAG	2 cut(s)	806, 1139
SphI	GCATGC	2 cut(s)	140, 850
Sse9I	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
SsiI	CCGC	2 cut(s)	383, 844
SspMI	CTAG	2 cut(s)	815, 1230
StyI	CCWWGG	2 cut(s)	963, 1173
TaaI	ACNGT	1 cut(s)	894
TaiI	ACGT	2 cut(s)	501, 688
TaqI	TCGA	2 cut(s)	681, 731
TasI	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
TfiI	GAWTC	5 cut(s)	189, 460, 887, 1219, 1258
Tru1I	TTAA	2 cut(s)	219, 1163
Tru9I	TTAA	2 cut(s)	219, 1163
TscAI	CASTG	5 cut(s)	183, 470, 514, 897, 1138
TseFI	GTSAC	2 cut(s)	388, 1034
TseI	GCWGC	3 cut(s)	140, 295, 298
Tsp45I	GTSAC	2 cut(s)	388, 1034
TspDTI	ATGAA	5 cut(s)	29, 291, 632, 785, 929
TspGWI	ACGGA	3 cut(s)	295, 407, 1105
TspRI	CASTG	5 cut(s)	183, 470, 514, 897, 1138
Van91I	CCANNNNNTGG	2 cut(s)	356, 413
VneI	GTGCAC	2 cut(s)	718, 1107
XapI	RAATTY	4 cut(s)	236, 368, 564, 709
XceI	RCATGY	3 cut(s)	140, 850, 1242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	815, 1230
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.