Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

64421963 .. 64423674

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG420500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCAAAGAGATCAGATTTTGCGCAAAAGCTGCTAGATGATCTTCAGGTTAGGAAGGAACGAATGGCTGCACCAGCGCAGAGCTCAAACCGTTCAAACGCAATGGCTATTGATGCATATGCTTATTCCAAGCAAACTTATAGAGGATCAAGGGATACAAAAACCCATGGAATAACTAGTTCCAGAACTGGGAACCCCCAGAGCAGGTCAACTGGAAGTAGTAGAACATCTATTCGTCAAGAAGCTTCAAACCAGATGGTTGCTTATGGGAGAGGTGGGAACTCAGGACAAATAGTAGATCTTTCCATGGCCTTGGCTTTTGCACTTGAGAATGGAGCCACAAAACTCACCAGAACAAGTTCATCAAGCAAAAGTTCAGTGATGGGATTTCTGAATCAAATTGGTAGGGGATCCATGGACTTCAACAAAATGGAAAGAAAGGGAAATGTCAACATGTACTGGGGTTCAAGTAGTCAGTTCCCTAACCTTTCAAATTTTCATATAGAAGAAATATCCAGAGGGGCACAGAAACTAAACCAGATCCTTAGAGCTTGCTGCAATGGTGTTAATGTTGATAAGTTTTCAATAGAGATCGGGAAGGAACTGTTTAAAGGGGCCATGGATTTGGAAGAGTCCTTGAGAATGCTAGTGAACCTGCAGGAAGCTTCAGAACATATGACCACCTCCCAAAGGAAAAGTCGGATCACATTGCTAGACGAAGATGAAGATGGTGAAGACCAAATAGAAGAACAAAAGCAACTGGCTCTGCCAAGGTTTTCCTTTGACAAATCAACAAGACATGCTCGTAAAATCCAAGAAGTAGGAAGGATGGCCCTCAAGCCTAAGATGGCAGCTCTGACTTACCCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

290

Amino Acids

32.29

Weight (kDa)

9.62

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	2 cut(s)	195, 663
AclWI	GGATC	5 cut(s)	154, 405, 418, 535, 710
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	2 cut(s)	29, 651
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	189, 204, 690
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	6 cut(s)	96, 249, 424, 468, 492, 585
AhlI	ACTAGT	1 cut(s)	176
AluBI	AGCT	6 cut(s)	31, 84, 245, 551, 665, 854
AluI	AGCT	6 cut(s)	31, 84, 245, 551, 665, 854
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	5 cut(s)	154, 405, 418, 535, 710
AoxI	GGCC	3 cut(s)	309, 615, 831
ApeKI	GCWGC	4 cut(s)	31, 68, 555, 851
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	682, 714
Asp700I	GAANNNNTTC	1 cut(s)	358
AspLEI	GCGC	2 cut(s)	25, 79
AspS9I	GGNCC	2 cut(s)	615, 832
AsuHPI	GGTGA	2 cut(s)	340, 743
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	18, 55, 542, 863
BccI	CCATC	5 cut(s)	250, 376, 722, 823, 841
BciVI	GTATCC	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	4 cut(s)	35, 177, 647, 713
BfmI	CTRYAG	1 cut(s)	656
BfuAI	ACCTGC	2 cut(s)	195, 663
BfuI	GTATCC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	4 cut(s)	32, 69, 556, 852
BlsI	GCNGC	4 cut(s)	33, 70, 557, 853
BmgT120I	GGNCC	2 cut(s)	615, 832
BmiI	GGNNCC	4 cut(s)	194, 337, 412, 616
BmrI	ACTGGG	2 cut(s)	198, 469
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	2 cut(s)	198, 469
BpiI	GAAGAC	1 cut(s)	741
BpuEI	CTTGAG	3 cut(s)	347, 658, 821
BsaJI	CCNNGG	6 cut(s)	166, 306, 312, 414, 618, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 204, 690
Bse1I	ACTGG	4 cut(s)	193, 217, 464, 765
Bse3DI	GCAATG	3 cut(s)	108, 565, 707
BseDI	CCNNGG	6 cut(s)	166, 306, 312, 414, 618, 770
BseGI	GGATG	1 cut(s)	834
BseLI	CCNNNNNNNGG	3 cut(s)	189, 204, 690
BseMI	GCAATG	3 cut(s)	108, 565, 707
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	4 cut(s)	193, 217, 464, 765
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	4 cut(s)	18, 55, 542, 863
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	311, 617, 833
BsiHKAI	GWGCWC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	189, 204, 690
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	3 cut(s)	311, 617, 833
Bsp1286I	GDGCHC	2 cut(s)	86, 526
Bsp143I	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
Bsp19I	CCATGG	4 cut(s)	166, 306, 414, 618
BspANI	GGCC	3 cut(s)	311, 617, 833
BspCNI	CTCAG	1 cut(s)	296
BspLI	GGNNCC	4 cut(s)	194, 337, 412, 616
BspMAI	CTGCAG	1 cut(s)	660
BspMI	ACCTGC	2 cut(s)	195, 663
BspPI	GGATC	5 cut(s)	154, 405, 418, 535, 710
BsrDI	GCAATG	3 cut(s)	108, 565, 707
BsrI	ACTGG	4 cut(s)	193, 217, 464, 765
BssECI	CCNNGG	6 cut(s)	166, 306, 312, 414, 618, 770
BssMI	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
BssT1I	CCWWGG	6 cut(s)	166, 306, 312, 414, 618, 770
Bst4CI	ACNGT	2 cut(s)	92, 606
Bst6I	CTCTTC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	3 cut(s)	283, 545, 843
BstDSI	CCRYGG	4 cut(s)	166, 306, 414, 618
BstENI	CCTNNNNNAGG	1 cut(s)	688
BstF5I	GGATG	1 cut(s)	834
BstHHI	GCGC	2 cut(s)	25, 79
BstKTI	GATC	8 cut(s)	14, 43, 149, 301, 413, 543, 594, 705
BstMBI	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 74, 113
BstNSI	RCATGY	2 cut(s)	457, 803
BstSFI	CTRYAG	1 cut(s)	656
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	4 cut(s)	18, 55, 542, 863
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	3 cut(s)	298, 410, 540
BstXI	CCANNNNNNTGG	2 cut(s)	313, 625
BstYI	RGATCY	3 cut(s)	298, 410, 540
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	311, 617, 833
BtgI	CCRYGG	4 cut(s)	166, 306, 414, 618
BtsCI	GGATG	1 cut(s)	834
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	2 cut(s)	195, 663
Cac8I	GCNNGC	1 cut(s)	553
CfoI	GCGC	2 cut(s)	25, 79
Cfr13I	GGNCC	2 cut(s)	615, 832
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	7 cut(s)	167, 307, 415, 454, 619, 800, 870
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	3 cut(s)	283, 545, 843
DpnI	GATC	8 cut(s)	13, 42, 148, 300, 412, 542, 593, 704
DpnII	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
DraI	TTTAAA	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	6 cut(s)	166, 306, 312, 414, 618, 770
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	29, 651
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	688
EcoT14I	CCWWGG	6 cut(s)	166, 306, 312, 414, 618, 770
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	6 cut(s)	166, 306, 312, 414, 618, 770
FaeI	CATG	7 cut(s)	170, 310, 418, 457, 622, 803, 873
FatI	CATG	7 cut(s)	166, 306, 414, 453, 618, 799, 869
FauNDI	CATATG	2 cut(s)	118, 675
Fnu4HI	GCNGC	4 cut(s)	32, 69, 556, 852
FokI	GGATG	1 cut(s)	841
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	32, 69, 556, 852
FspBI	CTAG	4 cut(s)	35, 177, 647, 713
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 78
GluI	GCNGC	4 cut(s)	32, 69, 556, 852
HaeIII	GGCC	3 cut(s)	311, 617, 833
HhaI	GCGC	2 cut(s)	25, 79
Hin1II	CATG	7 cut(s)	170, 310, 418, 457, 622, 803, 873
Hin6I	GCGC	2 cut(s)	23, 77
HinP1I	GCGC	2 cut(s)	23, 77
HincII	GTYRAC	2 cut(s)	210, 451
HindII	GTYRAC	2 cut(s)	210, 451
HindIII	AAGCTT	2 cut(s)	243, 663
HinfI	GANTC	2 cut(s)	394, 632
HphI	GGTGA	2 cut(s)	340, 743
Hpy166II	GTNNAC	3 cut(s)	210, 451, 652
Hpy188I	TCNGA	5 cut(s)	16, 393, 670, 702, 858
Hpy188III	TCNNGA	5 cut(s)	183, 239, 285, 516, 595
Hpy8I	GTNNAC	3 cut(s)	210, 451, 652
HpyAV	CCTTC	3 cut(s)	49, 592, 819
HpyCH4III	ACNGT	2 cut(s)	92, 606
HpyCH4V	TGCA	5 cut(s)	71, 116, 323, 558, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 74, 113
HpyF3I	CTNAG	3 cut(s)	283, 545, 843
Hsp92II	CATG	7 cut(s)	170, 310, 418, 457, 622, 803, 873
HspAI	GCGC	2 cut(s)	23, 77
Kzo9I	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	4 cut(s)	18, 55, 542, 863
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	4 cut(s)	35, 177, 647, 713
MalI	GATC	8 cut(s)	13, 42, 148, 300, 412, 542, 593, 704
MboI	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
MboII	GAAGA	7 cut(s)	35, 518, 641, 731, 737, 746, 758
MflI	RGATCY	3 cut(s)	298, 410, 540
MhlI	GDGCHC	2 cut(s)	86, 526
MluCI	AATT	2 cut(s)	399, 493
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	680
MnlI	CCTC	5 cut(s)	137, 266, 512, 694, 845
Mph1103I	ATGCAT	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	2 cut(s)	567, 609
Mva1269I	GAATGC	1 cut(s)	648
MwoI	GCNNNNNNNGC	3 cut(s)	31, 74, 113
NcoI	CCATGG	4 cut(s)	166, 306, 414, 618
NdeI	CATATG	2 cut(s)	118, 675
NdeII	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
NlaIII	CATG	7 cut(s)	170, 310, 418, 457, 622, 803, 873
NlaIV	GGNNCC	4 cut(s)	194, 337, 412, 616
NsbI	TGCGCA	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	2 cut(s)	457, 803
PciI	ACATGT	1 cut(s)	453
PctI	GAATGC	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	33, 70, 557, 853
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PscI	ACATGT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	86
PspN4I	GGNNCC	4 cut(s)	194, 337, 412, 616
PspPI	GGNCC	2 cut(s)	615, 832
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	3 cut(s)	298, 410, 540
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	567, 609
SatI	GCNGC	4 cut(s)	32, 69, 556, 852
Sau3AI	GATC	8 cut(s)	11, 40, 146, 298, 410, 540, 591, 702
Sau96I	GGNCC	2 cut(s)	615, 832
SbfI	CCTGCAGG	1 cut(s)	660
SchI	GAGTC	1 cut(s)	641
SdaI	CCTGCAGG	1 cut(s)	660
SduI	GDGCHC	2 cut(s)	86, 526
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	656
SmlI	CTYRAG	3 cut(s)	326, 637, 836
SmoI	CTYRAG	3 cut(s)	326, 637, 836
SpeI	ACTAGT	1 cut(s)	176
Sse8387I	CCTGCAGG	1 cut(s)	660
Sse9I	AATT	2 cut(s)	399, 493
SspMI	CTAG	4 cut(s)	35, 177, 647, 713
SstI	GAGCTC	1 cut(s)	86
StyI	CCWWGG	6 cut(s)	166, 306, 312, 414, 618, 770
TaaI	ACNGT	2 cut(s)	92, 606
TasI	AATT	2 cut(s)	399, 493
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	567, 609
Tru9I	TTAA	2 cut(s)	567, 609
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	4 cut(s)	31, 68, 555, 851
TspDTI	ATGAA	3 cut(s)	351, 488, 738
TspRI	CASTG	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	688
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	2 cut(s)	457, 803
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	4 cut(s)	35, 177, 647, 713
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.