Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

59852989 .. 59854031

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG413200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCAGCGTCAAAATTCAGTCTCAGTAGTACCTAACGATCAACATGATCAAGTACCAATCTTTGGAGCTGATGAGTGCATTACATCACCAAATGCACTTAATGGAACCCAATCAACCCATGAAGACACCTTGGATATTTCATCCACATTGCAATTGGAGCAACAGAAGCCTTTCAAATGGAGAAAACAAGAGCCACTTACAGAAACTGAAATCCTTCTCAAGCAGATAGTGATCCAGAGCCAACTGTTCCTCAACACAGCAGAGGCACTTTTCAGACTCGAAATCCCTTTCGGAATTCTCCACGCTAGTAGTAGCGACTACGATCATGAGTACAACTACATCACTCATCCCGAAGACATAAAGCTCACATTAGACTGCAGCTACGAGATAATGAAAAGAAAAGGTAAAAGGCAAGAGCTCGCTGTGCATCCCAATTTTGTGAAGGTATCCATAAGCTTCACTCAGGTCCAGTCTCTGGATGAGCTGGTTAAGCAGTTGAGTAAAGACATTGATAAGCTGAAACTGTATGGGAAGAATGGAAAACTGGAATGTGGGGCTGAAGAGTATGTGCCTAGAATGCTTGAATTCGACGTGAATAACAGGGAGCCTGAGCTGAACTGTATGTGGGATTTGGGTTGGGATGTGACCATGTTTGGGTTTGTTGAAGTGGATGAAGTTGTTAGGGATCTGGAGAGGGGTGTGCTCACTGGACTTGTTGATGAGCTTACCGGCCAGAGACCTCTTTCATATGTGAGAATTTCGATTACTGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

258

Amino Acids

29.61

Weight (kDa)

4.89

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	62, 475
AclWI	GGATC	2 cut(s)	226, 693
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	4 cut(s)	13, 294, 584, 756
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	3 cut(s)	30, 54, 332
AfiI	CCNNNNNNNGG	3 cut(s)	62, 475, 654
AgsI	TTSAA	3 cut(s)	175, 584, 665
AjiI	CACGTC	1 cut(s)	592
AluBI	AGCT	9 cut(s)	68, 364, 381, 418, 456, 484, 517, 613, 724
AluI	AGCT	9 cut(s)	68, 364, 381, 418, 456, 484, 517, 613, 724
Alw21I	GWGCWC	2 cut(s)	420, 705
Alw26I	GTCTC	3 cut(s)	25, 477, 730
AlwI	GGATC	2 cut(s)	226, 693
AlwNI	CAGNNNCTG	2 cut(s)	206, 475
AoxI	GGCC	1 cut(s)	730
ApeKI	GCWGC	2 cut(s)	4, 378
ApoI	RAATTY	4 cut(s)	13, 294, 584, 756
Asp700I	GAANNNNTTC	2 cut(s)	170, 213
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	129, 360
Bbv12I	GWGCWC	2 cut(s)	420, 705
BbvI	GCAGC	2 cut(s)	16, 390
BciVI	GTATCC	1 cut(s)	457
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	25, 477, 730
BfaI	CTAG	2 cut(s)	306, 573
BfmI	CTRYAG	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	2 cut(s)	5, 379
BlsI	GCNGC	2 cut(s)	6, 380
Bme18I	GGWCC	1 cut(s)	466
BmgBI	CACGTC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	106, 606
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	2 cut(s)	129, 360
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	203
BsaBI	GATNNNNATC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 475, 654
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	3 cut(s)	469, 549, 712
Bse3DI	GCAATG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	6 cut(s)	140, 346, 427, 484, 646, 676
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	3 cut(s)	62, 475, 654
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	3 cut(s)	36, 476, 600
BseNI	ACTGG	3 cut(s)	469, 549, 712
BseXI	GCAGC	2 cut(s)	16, 390
BshFI	GGCC	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	420, 705
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	3 cut(s)	62, 475, 654
BsmAI	GTCTC	3 cut(s)	25, 477, 730
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	732
Bso31I	GGTCTC	1 cut(s)	730
Bsp1286I	GDGCHC	2 cut(s)	420, 705
Bsp143I	GATC	5 cut(s)	37, 46, 231, 322, 685
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	3 cut(s)	35, 475, 601
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	106, 606
BspMAI	CTGCAG	1 cut(s)	380
BspPI	GGATC	2 cut(s)	226, 693
BspTNI	GGTCTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	3 cut(s)	469, 549, 712
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	37, 46, 231, 322, 685
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	246, 525, 620
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	3 cut(s)	22, 462, 609
BstF5I	GGATG	6 cut(s)	140, 346, 427, 484, 646, 676
BstKTI	GATC	5 cut(s)	40, 49, 234, 325, 688
BstMAI	GTCTC	3 cut(s)	25, 477, 730
BstMBI	GATC	5 cut(s)	37, 46, 231, 322, 685
BstMWI	GCNNNNNNNGC	5 cut(s)	157, 166, 424, 490, 577
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	16, 390
BstV2I	GAAGAC	2 cut(s)	129, 360
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	732
BtrI	CACGTC	1 cut(s)	592
BtsCI	GGATG	6 cut(s)	140, 346, 427, 484, 646, 676
BtsIMutI	CAGTG	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	420
CaiI	CAGNNNCTG	2 cut(s)	206, 475
CciI	TCATGA	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	29, 53, 331
CviAII	CATG	4 cut(s)	44, 119, 326, 649
CviQI	GTAC	3 cut(s)	29, 53, 331
DdeI	CTNAG	3 cut(s)	22, 462, 609
DpnI	GATC	5 cut(s)	39, 48, 233, 324, 687
DpnII	GATC	5 cut(s)	37, 46, 231, 322, 685
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	579
EcoICRI	GAGCTC	1 cut(s)	418
EcoRI	GAATTC	2 cut(s)	294, 584
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	47, 122, 329, 652
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	4 cut(s)	43, 118, 325, 648
FauNDI	CATATG	1 cut(s)	748
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	5, 379
FokI	GGATG	6 cut(s)	127, 333, 414, 491, 653, 683
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	5, 379
FspBI	CTAG	2 cut(s)	306, 573
GluI	GCNGC	2 cut(s)	5, 379
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	1 cut(s)	729
Hin1II	CATG	4 cut(s)	47, 122, 329, 652
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	275, 293
Hpy188III	TCNNGA	5 cut(s)	235, 326, 350, 476, 689
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	224, 436
HpyCH4III	ACNGT	3 cut(s)	246, 525, 620
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	7 cut(s)	4, 78, 95, 151, 378, 427, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	157, 166, 424, 490, 577
HpyF3I	CTNAG	3 cut(s)	22, 462, 609
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	4 cut(s)	47, 122, 329, 652
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	5 cut(s)	37, 46, 231, 322, 685
LmnI	GCTCC	3 cut(s)	65, 157, 604
Lsp1109I	GCAGC	2 cut(s)	16, 390
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	306, 573
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	5 cut(s)	39, 48, 233, 324, 687
MboI	GATC	5 cut(s)	37, 46, 231, 322, 685
MboII	GAAGA	4 cut(s)	134, 365, 544, 572
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	2 cut(s)	420, 705
MluCI	AATT	6 cut(s)	13, 152, 294, 433, 584, 756
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	256, 260, 687, 750
MroXI	GAANNNNTTC	2 cut(s)	170, 213
MseI	TTAA	2 cut(s)	99, 489
MspI	CCGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	582
MwoI	GCNNNNNNNGC	5 cut(s)	157, 166, 424, 490, 577
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	5 cut(s)	37, 46, 231, 322, 685
NlaIII	CATG	4 cut(s)	47, 122, 329, 652
NlaIV	GGNNCC	2 cut(s)	106, 606
NmuCI	GTSAC	1 cut(s)	643
PagI	TCATGA	1 cut(s)	325
PctI	GAATGC	1 cut(s)	582
PdmI	GAANNNNTTC	2 cut(s)	170, 213
PflMI	CCANNNNNTGG	2 cut(s)	62, 475
PkrI	GCNGC	2 cut(s)	6, 380
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	106, 606
PspPI	GGNCC	1 cut(s)	466
PstI	CTGCAG	1 cut(s)	380
PstNI	CAGNNNCTG	2 cut(s)	206, 475
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	3 cut(s)	30, 54, 332
RsaNI	GTAC	3 cut(s)	29, 53, 331
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	99, 489
SatI	GCNGC	2 cut(s)	5, 379
Sau3AI	GATC	5 cut(s)	37, 46, 231, 322, 685
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	420, 705
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	6 cut(s)	13, 152, 294, 433, 584, 756
SspMI	CTAG	2 cut(s)	306, 573
SstI	GAGCTC	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	246, 525, 620
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	3 cut(s)	279, 588, 761
TasI	AATT	6 cut(s)	13, 152, 294, 433, 584, 756
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	2 cut(s)	99, 489
Tru9I	TTAA	2 cut(s)	99, 489
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	4, 378
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	5 cut(s)	129, 135, 407, 687, 735
TspRI	CASTG	1 cut(s)	712
Van91I	CCANNNNNTGG	2 cut(s)	62, 475
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	4 cut(s)	13, 294, 584, 756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmnI	GAANNNNTTC	2 cut(s)	170, 213
XspI	CTAG	2 cut(s)	306, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.