Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

2454255 .. 2458276

Gene Structure 4022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1035200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2901 bp

ATGGCAAAGCGATCGGATTTTGCGCAGAAGCTGTTGGATGATCTTCGCGTCCGCAAGGAGAAAATGGGTGCGTCTCAGAGCTCGAACCGGTCGAACTCCATGGCAATAGATGCATATGCTTATTCCAAGCAAGCTTATAGAGGAAGAGGGGATGCAAGAACCAGTGGAACAATTGGCTCCAGAGGAAGTAGCAGAACACCGATTATTCAAGATGGTTCGAATCAGATTGTTGCTTATGGGAGAGGAGGTAGGAGCTCACAACAAATGGGAGATCTTTCCATGGCATTGGCTTTTGCACTTGAAAATGGAGGAAAGCTCGGGAGGGCGGATACATCTAGCAGAAGTTCAATGCTAGGATTTTTGAATCAAATTGGGAGGGGAGCCATGGAGTTCAGCAAGATGGAAAGAAAAGGTAGCACGAATAGGTACTTCGGTTCAAGTAACCAATTTCCTAACCTTTCGCATCTCCATATCGAAGAAATATCGAGAGGGGCACATAAATTGAATCAGATCCTAAAAGCATGCTCGAATGGTCTTAATGTCAATGGATTTTCAATAGAAGTTGGGAAGGAGTTAATGAAAGGGGCAATGGATTTGGAAGAGTCCTTGAGAATGCTCGTAAACCTGCAGGAAACTTCTGATTACATGGTCCGCTCTCAGAGGAAAAATCGGATCACATTGCTAGATGAGGAGGAAGATGACGAAGATAATGCTGTTAAAATAGATGAGCAAAAGCAAATTGATCTGCCAAGGTTCTCATTTGACAAGGGTTCGAGACACGGGCGTAAAATTCAAGAAGCTGGAAGGACGGGGTTCATGCAGAAGATGGCTGCAGCTCTGACTTATACTACAGAAGGTAGTAGCTTCAACCGCGAAAAGCAAGGGAAAATAACCTCCTCCCCATCAGTTACTCAGAGGCAGTCGGTCAGCTATAGCTCCGGCGTCAAGAATCCATCAGCAGAATATAAAGAGTCTAAACCAGAAAAGGAAAGAATTCCAAATGTAATTGCAAAACTAATGGGGTTGAATGAGCTTCCGAAAAACGAAAGCATGAAGCACAAAGCGCATGAAGACTTGAGTTCCAAATCAAAAACAGAAAGCCGGACGAGAGAGCAAACAATGCGCGAAAGGAGTAAGATTTCTGGAGTTAAGACTAAGGATCCATTGATGCATAATACCACATTTGTTTTGCAAGCAGAAAAAAACATGCTCCCCAACAATGTCAGCCTTGAGTTAGTTGTTCATGATGGAACATCGCAATGGAAAGACCCGGAAGGATTTAAACCGGTAGCAAGATCAGAAAAGGCAACCATCAAATCAGATAAGCAGCAAAAAACCACTCAGAGCGTCAAACCGAATAAAGCTGTGGTGCATAACAATTCCGAAGCGAGACTTGCGACACAAGGAAAAACAGAGTTCAAGGAAAATAGGGTTCAGACGGAAAAGCAAAACGGGATCAAGATTCCCCTGAGAAATCAGCATAAGTCACCGAACAATCATGAACTTCAGCAGCAATCCATGTTTTTGAAATCAGAGACACTGGAAGATAAGCGCAGAAGAGAGACGAAGGAGCAGCAGAGTCCACAACCAAAGTTGCCAGCAAGAAAACAACGAGGAGGCGAAATCATATCAAGGACTAAGTCAACAGGAGCAGTAGATTTGCAAAAGAAGCAGACACTTGCAGACCAAGCTAGACTACATAGGAAAAACACGAGAGAAGTCGGTGGTGCAATGCAACCCAAAGGAGTTTCAAATGGCAGATTCCATGAAAATCCGGTCAGAAGCAAAAGCTTTTCTGATTTGAATTTTGACACGAACAAATCATCTCCAAAGTACCTGGATCCTGAACCATCAAAAGAAAAATTTGGCACTCCACTGGCTATGGAGGAGAGACCTGTTCATGCTGCACCACCATTGCAGAAGGCAAAATCTAGAAGAGTGAATAAAAGCGAAATGCCTCGAAGAATCGATGAAGTGGCAACCAGAAGAAGCCATGAAAAACTTGGTAGCCAGAATGCAACAGAAAAAGTTAGAGCCAGCAGGCTAAAACAAGCTGAGCCACGCATCGTCAAGTCCAACAAGTCAAGAGCAAGCATTCAATCAGTAGATTCAACGCAAAACCTACATATAGAAGCCAAGCTGGAGGCTCCCACTCTGTGTGATCCCAATGAAGTTCATCTACTTCCAAATGAAAGTTATGATCAGCAATATCAAGCACCTGTTTTCGGAGATGATGAGTGCATAACTGCATCAACTACACCTAATGGAAACCGTGAATCCGGCTTGGACATTTGTTATCCAGAAGTACGGGAGCACCATAAAGCATTCAACCTAAGAAAACAAGAGCCGCTGACAGAAAGCGAAAACCGCTTGAAGCAGGTAGTGATCAAGAGCCATCATTTCCTCAACACAGCAGAAGCACTTTTCAAACTCGAAATCCCTTTTGGCATTCTTCACGACAGCGAACGCGACTGCAGCCCGGATGTAGACATCAAGCTCACATTAGAATGCGGCTATGAAGTAATGAAACGAAAGGGGAGAAGGCATGAGCTCAATGTCCATCCTAACTGCACGAAGACATCGATAAGTTTTGTCAAAATACATTCCTTGGATGAGCTGGTTGGGCAACTGCATAAAGATTTCGAGACACTGAAGTTCTACGGAAGAAAAGGAAAGTATGAATGTGAGGTGGAAGCGTATCTGCCGCAAATGCTGGAAAGCGATATGCATAACTGGGAGCCGGACGTGAATTGCATGTGGGATATGGGTTGGGATGAAACTATGTTTGCAGTTATTCAAGTGGATGAAGTTGTGAAAGATTTGGAGAGGCTTCTGCTCAATGGACTTGTAGATGAGCTTGCCAGAGACCTCCGTCGCACTGGTTTTTCTGCAATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

967

Amino Acids

109.25

Weight (kDa)

9.34

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	2 cut(s)	633, 2368
AccBSI	CCGCTC	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	2487
AccII	CGCG	4 cut(s)	48, 873, 1125, 2469
AciI	CCGC	8 cut(s)	52, 326, 652, 871, 2348, 2368, 2511, 2705
AclWI	GGATC	8 cut(s)	505, 680, 1154, 1167, 1463, 1835, 1848, 2156
AcsI	RAATTY	4 cut(s)	789, 993, 1804, 1862
AcuI	CTGAAG	2 cut(s)	1490, 2672
AcyI	GRCGYC	1 cut(s)	942
AdeI	CACNNNGTG	1 cut(s)	2157
AfaI	GTAC	3 cut(s)	428, 1835, 2307
AfiI	CCNNNNNNNGG	1 cut(s)	2225
AgeI	ACCGGT	2 cut(s)	87, 1285
AjiI	CACGTC	1 cut(s)	2746
AjnI	CCWGG	1 cut(s)	1836
AjuI	GAANNNNNNNTTGG	2 cut(s)	2427, 2459
Alw21I	GWGCWC	4 cut(s)	83, 257, 2316, 2553
Alw26I	GTCTC	8 cut(s)	78, 769, 1384, 1529, 1556, 1885, 2639, 2859
AlwI	GGATC	8 cut(s)	505, 680, 1154, 1167, 1463, 1835, 1848, 2156
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	317
ApeKI	GCWGC	7 cut(s)	830, 833, 1327, 1510, 1573, 1904, 2475
ApoI	RAATTY	4 cut(s)	789, 993, 1804, 1862
AsiGI	ACCGGT	2 cut(s)	87, 1285
Asp700I	GAANNNNTTC	1 cut(s)	993
AspLEI	GCGC	4 cut(s)	25, 1066, 1125, 1554
AspS9I	GGNCC	1 cut(s)	649
AsuC2I	CCSGG	2 cut(s)	1271, 2480
AsuHPI	GGTGA	1 cut(s)	1479
AsuII	TTCGAA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	649
BaeGI	GKGCMC	1 cut(s)	496
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BamHI	GGATCC	2 cut(s)	1159, 1840
BanII	GRGCYC	3 cut(s)	83, 257, 2553
BarI	GAAGNNNNNNTAC	2 cut(s)	2163, 2195
BauI	CACGAG	1 cut(s)	1711
BbsI	GAAGAC	2 cut(s)	1077, 2582
Bbv12I	GWGCWC	4 cut(s)	83, 257, 2316, 2553
BbvI	GCAGC	7 cut(s)	817, 845, 1339, 1522, 1585, 1891, 2487
BcgI	CGANNNNNNTGC	3 cut(s)	28, 692, 726
BciT130I	CCWGG	1 cut(s)	1838
BciVI	GTATCC	1 cut(s)	322
BclI	TGATCA	2 cut(s)	2200, 2385
BcnI	CCSGG	2 cut(s)	1271, 2480
BcoDI	GTCTC	8 cut(s)	78, 769, 1384, 1529, 1556, 1885, 2639, 2859
BfaI	CTAG	5 cut(s)	336, 353, 683, 1692, 1932
BfmI	CTRYAG	5 cut(s)	626, 831, 849, 931, 2473
BfuAI	ACCTGC	2 cut(s)	633, 2368
BfuI	GTATCC	1 cut(s)	322
BglII	AGATCT	1 cut(s)	271
BlpI	GCTNAGC	1 cut(s)	2055
Bme1390I	CCNGG	3 cut(s)	1271, 1838, 2480
Bme18I	GGWCC	1 cut(s)	649
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	2746
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	6 cut(s)	178, 382, 1161, 1842, 2148, 2739
BmrFI	CCNGG	3 cut(s)	1271, 1838, 2480
BmrI	ACTGGG	1 cut(s)	2743
BmsI	GCATC	6 cut(s)	100, 142, 472, 1158, 2073, 2258
BmuI	ACTGGG	1 cut(s)	2743
BoxI	GACNNNNGTC	1 cut(s)	2871
BpiI	GAAGAC	2 cut(s)	1077, 2582
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpmI	CTGGAG	3 cut(s)	163, 1164, 2162
Bpu1102I	GCTNAGC	1 cut(s)	2055
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	3 cut(s)	628, 1096, 1250
BpuMI	CCSGG	2 cut(s)	1271, 2480
Bsa29I	ATCGAT	2 cut(s)	1968, 2582
BsaHI	GRCGYC	1 cut(s)	942
BsaI	GGTCTC	2 cut(s)	1885, 2859
BsaJI	CCNNGG	5 cut(s)	99, 279, 384, 749, 2607
BsaWI	WCCGGW	3 cut(s)	87, 1285, 1774
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	2225
Bse118I	RCCGGY	2 cut(s)	87, 1285
Bse1I	ACTGG	5 cut(s)	162, 1545, 1881, 2738, 2884
Bse3DI	GCAATG	5 cut(s)	594, 677, 1265, 1737, 1913
BseBI	CCWGG	1 cut(s)	1838
BseCI	ATCGAT	2 cut(s)	1968, 2582
BseDI	CCNNGG	5 cut(s)	99, 279, 384, 749, 2607
BseGI	GGATG	7 cut(s)	43, 157, 2488, 2560, 2617, 2779, 2809
BseLI	CCNNNNNNNGG	1 cut(s)	2225
BseMI	GCAATG	5 cut(s)	594, 677, 1265, 1737, 1913
BseMII	CTCAG	6 cut(s)	89, 671, 926, 1355, 1460, 2046
BseNI	ACTGG	5 cut(s)	162, 1545, 1881, 2738, 2884
BseRI	GAGGAG	5 cut(s)	258, 704, 886, 1629, 1901
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	7 cut(s)	817, 845, 1339, 1522, 1585, 1891, 2487
BsgI	GTGCAG	2 cut(s)	1890, 2554
Bsh1236I	CGCG	4 cut(s)	48, 873, 1125, 2469
Bsh1285I	CGRYCG	2 cut(s)	14, 92
BshTI	ACCGGT	2 cut(s)	87, 1285
BshVI	ATCGAT	2 cut(s)	1968, 2582
BsiEI	CGRYCG	2 cut(s)	14, 92
BsiHKAI	GWGCWC	4 cut(s)	83, 257, 2316, 2553
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	9 cut(s)	88, 939, 1102, 1271, 1286, 1775, 2280, 2480, 2741
BslI	CCNNNNNNNGG	1 cut(s)	2225
BsmAI	GTCTC	8 cut(s)	78, 769, 1384, 1529, 1556, 1885, 2639, 2859
BsmBI	CGTCTC	2 cut(s)	78, 1556
BsmI	GAATGC	6 cut(s)	618, 2020, 2094, 2324, 2448, 2513
Bso31I	GGTCTC	2 cut(s)	1885, 2859
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	5 cut(s)	83, 257, 496, 2316, 2553
Bsp1720I	GCTNAGC	1 cut(s)	2055
Bsp19I	CCATGG	3 cut(s)	99, 279, 384
BspACI	CCGC	8 cut(s)	52, 326, 652, 871, 2348, 2368, 2511, 2705
BspCNI	CTCAG	6 cut(s)	88, 670, 925, 1354, 1461, 2047
BspDI	ATCGAT	2 cut(s)	1968, 2582
BspFNI	CGCG	4 cut(s)	48, 873, 1125, 2469
BspHI	TCATGA	2 cut(s)	1243, 1498
BspLI	GGNNCC	6 cut(s)	178, 382, 1161, 1842, 2148, 2739
BspMAI	CTGCAG	3 cut(s)	630, 835, 2477
BspMI	ACCTGC	2 cut(s)	633, 2368
BspPI	GGATC	8 cut(s)	505, 680, 1154, 1167, 1463, 1835, 1848, 2156
BspT104I	TTCGAA	1 cut(s)	218
BspTNI	GGTCTC	2 cut(s)	1885, 2859
BsrBI	CCGCTC	1 cut(s)	654
BsrDI	GCAATG	5 cut(s)	594, 677, 1265, 1737, 1913
BsrFI	RCCGGY	2 cut(s)	87, 1285
BsrI	ACTGG	5 cut(s)	162, 1545, 1881, 2738, 2884
BssAI	RCCGGY	2 cut(s)	87, 1285
BssECI	CCNNGG	5 cut(s)	99, 279, 384, 749, 2607
BssNI	GRCGYC	1 cut(s)	942
BssSI	CACGAG	1 cut(s)	1711
BssT1I	CCWWGG	5 cut(s)	99, 279, 384, 749, 2607
Bst2BI	CACGAG	1 cut(s)	1711
Bst2UI	CCWGG	1 cut(s)	1838
Bst4CI	ACNGT	1 cut(s)	2273
Bst6I	CTCTTC	4 cut(s)	139, 594, 1552, 1930
BstACI	GRCGYC	1 cut(s)	942
BstAPI	GCANNNNNTGC	2 cut(s)	110, 1120
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	8 cut(s)	132, 523, 1194, 1599, 2038, 2042, 2092, 2859
BstDEI	CTNAG	9 cut(s)	75, 657, 912, 1155, 1341, 1469, 1638, 2055, 2333
BstDSI	CCRYGG	3 cut(s)	99, 279, 384
BstF5I	GGATG	7 cut(s)	43, 157, 2488, 2560, 2617, 2779, 2809
BstFNI	CGCG	4 cut(s)	48, 873, 1125, 2469
BstHHI	GCGC	4 cut(s)	25, 1066, 1125, 1554
BstMAI	GTCTC	8 cut(s)	78, 769, 1384, 1529, 1556, 1885, 2639, 2859
BstMCI	CGRYCG	2 cut(s)	14, 92
BstNI	CCWGG	1 cut(s)	1838
BstNSI	RCATGY	3 cut(s)	525, 1210, 2758
BstPAI	GACNNNNGTC	1 cut(s)	2871
BstSCI	CCNGG	3 cut(s)	1269, 1836, 2478
BstSFI	CTRYAG	5 cut(s)	626, 831, 849, 931, 2473
BstSLI	GKGCMC	1 cut(s)	496
BstUI	CGCG	4 cut(s)	48, 873, 1125, 2469
BstV1I	GCAGC	7 cut(s)	817, 845, 1339, 1522, 1585, 1891, 2487
BstV2I	GAAGAC	2 cut(s)	1077, 2582
BstX2I	RGATCY	4 cut(s)	271, 510, 1159, 1840
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	4 cut(s)	271, 510, 1159, 1840
Bsu15I	ATCGAT	2 cut(s)	1968, 2582
BsuI	GTATCC	1 cut(s)	322
BsuTUI	ATCGAT	2 cut(s)	1968, 2582
BtgI	CCRYGG	3 cut(s)	99, 279, 384
BtgZI	GCGATG	1 cut(s)	1239
BtrI	CACGTC	1 cut(s)	2746
BtsCI	GGATG	7 cut(s)	43, 157, 2488, 2560, 2617, 2779, 2809
BtsIMutI	CAGTG	5 cut(s)	169, 1538, 1874, 2648, 2877
BveI	ACCTGC	2 cut(s)	633, 2368
Cac8I	GCNNGC	8 cut(s)	132, 523, 1194, 1599, 2038, 2042, 2092, 2859
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	2 cut(s)	1243, 1498
CfoI	GCGC	4 cut(s)	25, 1066, 1125, 1554
Cfr10I	RCCGGY	2 cut(s)	87, 1285
Cfr13I	GGNCC	1 cut(s)	649
ClaI	ATCGAT	2 cut(s)	1968, 2582
CseI	GACGC	4 cut(s)	37, 60, 931, 1336
Csp6I	GTAC	3 cut(s)	427, 1834, 2306
CspAI	ACCGGT	2 cut(s)	87, 1285
CviQI	GTAC	3 cut(s)	427, 1834, 2306
DdeI	CTNAG	9 cut(s)	75, 657, 912, 1155, 1341, 1469, 1638, 2055, 2333
DraI	TTTAAA	1 cut(s)	1282
DraIII	CACNNNGTG	1 cut(s)	2157
Eam1104I	CTCTTC	4 cut(s)	139, 594, 1552, 1930
EarI	CTCTTC	4 cut(s)	139, 594, 1552, 1930
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	3 cut(s)	81, 255, 2551
Eco130I	CCWWGG	5 cut(s)	99, 279, 384, 749, 2607
Eco24I	GRGCYC	3 cut(s)	83, 257, 2553
Eco31I	GGTCTC	2 cut(s)	1885, 2859
Eco47I	GGWCC	1 cut(s)	649
Eco53kI	GAGCTC	3 cut(s)	81, 255, 2551
Eco57I	CTGAAG	2 cut(s)	1490, 2672
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	3 cut(s)	81, 255, 2551
EcoRI	GAATTC	1 cut(s)	993
EcoRII	CCWGG	1 cut(s)	1836
EcoT14I	CCWWGG	5 cut(s)	99, 279, 384, 749, 2607
EcoT22I	ATGCAT	3 cut(s)	115, 1173, 2730
EcoT38I	GRGCYC	3 cut(s)	83, 257, 2553
ErhI	CCWWGG	5 cut(s)	99, 279, 384, 749, 2607
Esp3I	CGTCTC	2 cut(s)	78, 1556
FalI	AAGNNNNNCTT	2 cut(s)	1377, 1409
FauNDI	CATATG	1 cut(s)	115
FbaI	TGATCA	2 cut(s)	2200, 2385
FblI	GTMKAC	1 cut(s)	2487
FokI	GGATG	7 cut(s)	50, 164, 2495, 2547, 2624, 2786, 2816
FriOI	GRGCYC	3 cut(s)	83, 257, 2553
FspBI	CTAG	5 cut(s)	336, 353, 683, 1692, 1932
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	4 cut(s)	24, 1065, 1124, 1553
GsuI	CTGGAG	3 cut(s)	163, 1164, 2162
HapII	CCGG	9 cut(s)	88, 939, 1102, 1271, 1286, 1775, 2280, 2480, 2741
HgaI	GACGC	4 cut(s)	37, 60, 931, 1336
HhaI	GCGC	4 cut(s)	25, 1066, 1125, 1554
Hin1I	GRCGYC	1 cut(s)	942
Hin6I	GCGC	4 cut(s)	23, 1064, 1123, 1552
HinP1I	GCGC	4 cut(s)	23, 1064, 1123, 1552
HincII	GTYRAC	1 cut(s)	1644
HindII	GTYRAC	1 cut(s)	1644
HindIII	AAGCTT	2 cut(s)	132, 1789
HpaII	CCGG	9 cut(s)	88, 939, 1102, 1271, 1286, 1775, 2280, 2480, 2741
HphI	GGTGA	1 cut(s)	1479
Hpy166II	GTNNAC	4 cut(s)	622, 1583, 1644, 2488
Hpy8I	GTNNAC	4 cut(s)	622, 1583, 1644, 2488
Hpy99I	CGWCG	1 cut(s)	2877
HpyAV	CCTTC	7 cut(s)	562, 798, 848, 1268, 1561, 1915, 2535
HpyCH4III	ACNGT	1 cut(s)	2273
HpyCH4IV	ACGT	1 cut(s)	2745
HpyF3I	CTNAG	9 cut(s)	75, 657, 912, 1155, 1341, 1469, 1638, 2055, 2333
HpySE526I	ACGT	1 cut(s)	2745
Hsp92I	GRCGYC	1 cut(s)	942
HspAI	GCGC	4 cut(s)	23, 1064, 1123, 1552
Ksp22I	TGATCA	2 cut(s)	2200, 2385
Lsp1109I	GCAGC	7 cut(s)	817, 845, 1339, 1522, 1585, 1891, 2487
LweI	GCATC	6 cut(s)	100, 142, 472, 1158, 2073, 2258
MaeI	CTAG	5 cut(s)	336, 353, 683, 1692, 1932
MaeII	ACGT	1 cut(s)	2745
MaeIII	GTNAC	3 cut(s)	440, 907, 1485
MbiI	CCGCTC	1 cut(s)	654
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	4 cut(s)	271, 510, 1159, 1840
MhlI	GDGCHC	5 cut(s)	83, 257, 496, 2316, 2553
MlyI	GAGTC	3 cut(s)	611, 980, 1588
MmeI	TCCRAC	2 cut(s)	15, 2100
Mph1103I	ATGCAT	3 cut(s)	115, 1173, 2730
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	6 cut(s)	537, 575, 717, 1149, 1281, 2899
MslI	CAYNNNNRTG	2 cut(s)	1258, 2506
MspA1I	CMGCKG	1 cut(s)	2350
MspI	CCGG	9 cut(s)	88, 939, 1102, 1271, 1286, 1775, 2280, 2480, 2741
MspR9I	CCNGG	3 cut(s)	1271, 1838, 2480
MunI	CAATTG	1 cut(s)	171
Mva1269I	GAATGC	6 cut(s)	618, 2020, 2094, 2324, 2448, 2513
MvaI	CCWGG	1 cut(s)	1838
MvnI	CGCG	4 cut(s)	48, 873, 1125, 2469
NciI	CCSGG	2 cut(s)	1271, 2480
NcoI	CCATGG	3 cut(s)	99, 279, 384
NdeI	CATATG	1 cut(s)	115
NlaIV	GGNNCC	6 cut(s)	178, 382, 1161, 1842, 2148, 2739
NmuCI	GTSAC	1 cut(s)	1485
NsbI	TGCGCA	1 cut(s)	24
NsiI	ATGCAT	3 cut(s)	115, 1173, 2730
NspI	RCATGY	3 cut(s)	525, 1210, 2758
NspV	TTCGAA	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	525
PagI	TCATGA	2 cut(s)	1243, 1498
PcsI	WCGNNNNNNNCGW	2 cut(s)	89, 2579
PctI	GAATGC	6 cut(s)	618, 2020, 2094, 2324, 2448, 2513
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	9 cut(s)	220, 364, 505, 949, 1462, 1761, 1965, 2108, 2276
PflFI	GACNNNGTC	1 cut(s)	1639
PinAI	ACCGGT	2 cut(s)	87, 1285
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	3 cut(s)	610, 979, 1587
PpsI	GAGTC	3 cut(s)	610, 979, 1587
PshAI	GACNNNNGTC	1 cut(s)	2871
Psp124BI	GAGCTC	3 cut(s)	83, 257, 2553
Psp6I	CCWGG	1 cut(s)	1836
PspGI	CCWGG	1 cut(s)	1836
PspN4I	GGNNCC	6 cut(s)	178, 382, 1161, 1842, 2148, 2739
PspPI	GGNCC	1 cut(s)	649
PstI	CTGCAG	3 cut(s)	630, 835, 2477
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	4 cut(s)	271, 510, 1159, 1840
PsyI	GACNNNGTC	1 cut(s)	1639
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	428, 1835, 2307
RsaNI	GTAC	3 cut(s)	427, 1834, 2306
RseI	CAYNNNNRTG	2 cut(s)	1258, 2506
SacI	GAGCTC	3 cut(s)	83, 257, 2553
SaqAI	TTAA	6 cut(s)	537, 575, 717, 1149, 1281, 2899
Sau96I	GGNCC	1 cut(s)	649
SbfI	CCTGCAGG	1 cut(s)	630
SchI	GAGTC	3 cut(s)	611, 980, 1588
ScrFI	CCNGG	3 cut(s)	1271, 1838, 2480
SdaI	CCTGCAGG	1 cut(s)	630
SduI	GDGCHC	5 cut(s)	83, 257, 496, 2316, 2553
SfaNI	GCATC	6 cut(s)	100, 142, 472, 1158, 2073, 2258
SfcI	CTRYAG	5 cut(s)	626, 831, 849, 931, 2473
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	2 cut(s)	1258, 2506
SmlI	CTYRAG	3 cut(s)	607, 1075, 1229
SmoI	CTYRAG	3 cut(s)	607, 1075, 1229
SphI	GCATGC	1 cut(s)	525
Sse8387I	CCTGCAGG	1 cut(s)	630
SsiI	CCGC	8 cut(s)	52, 326, 652, 871, 2348, 2368, 2511, 2705
SspMI	CTAG	5 cut(s)	336, 353, 683, 1692, 1932
SstI	GAGCTC	3 cut(s)	83, 257, 2553
StyD4I	CCNGG	3 cut(s)	1269, 1836, 2478
StyI	CCWWGG	5 cut(s)	99, 279, 384, 749, 2607
TaaI	ACNGT	1 cut(s)	2273
TaiI	ACGT	1 cut(s)	2748
TaqII	GACCGA	1 cut(s)	913
TauI	GCSGC	3 cut(s)	2350, 2514, 2707
TfiI	GAWTC	9 cut(s)	220, 364, 505, 949, 1462, 1761, 1965, 2108, 2276
Tru1I	TTAA	6 cut(s)	537, 575, 717, 1149, 1281, 2899
Tru9I	TTAA	6 cut(s)	537, 575, 717, 1149, 1281, 2899
TscAI	CASTG	5 cut(s)	169, 1545, 1881, 2655, 2884
TseFI	GTSAC	1 cut(s)	1485
TseI	GCWGC	7 cut(s)	830, 833, 1327, 1510, 1573, 1904, 2475
Tsp45I	GTSAC	1 cut(s)	1485
TspGWI	ACGGA	3 cut(s)	1454, 2676, 2861
TspRI	CASTG	5 cut(s)	169, 1545, 1881, 2655, 2884
Tth111I	GACNNNGTC	1 cut(s)	1639
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	4 cut(s)	789, 993, 1804, 1862
XbaI	TCTAGA	1 cut(s)	1931
XceI	RCATGY	3 cut(s)	525, 1210, 2758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2000
XmiI	GTMKAC	1 cut(s)	2487
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	5 cut(s)	336, 353, 683, 1692, 1932
Zsp2I	ATGCAT	3 cut(s)	115, 1173, 2730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.