Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009513.1

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

9288 .. 13928

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009513.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3189 bp

atggcgaagagatcagattttgcgcaaaagctgcttgatgatcttcgggttaggaaggaacgaatggctgcaccagcgcagagctcaaaccgttcaaacgcaatggctatagatgcatatgcttattccaagcaaacttatagaggatcaagggatacaaaaacccatggaataactagttccagaactgggaacccccagagcaggtcaactggaagtagtagaacacctattcgtcaagaagcttcaaaccagatggttgcttatgggagaggtgggaactcaggacaaatagtagatctttccatggcattggcttttgcacttgagaatggagccacaaaactcaccagaacaagttcatcaagcaaaagttcagtgatggggtttctgaatcaaattggtaggggatccatggacttcaaaaaaatggaaagaaagggaaatgtcaacatgtactggggttcaagtagtcagttccctaacctttcaaatttccatatagaagaaatatccagaggggcacagaaactaaaccagatccttagagcttgctccaatggtgttaatgttgataagttttcaatagagatcgggaaggaactgtttaaaggggccatggatttggaagagtccttgagaatgcttgtgaacctgcaggaagcttcagaacatatggccacctcccaaaggaaaagtcgaatcacattgctagacgaagatgaagatggtgaagaccaaatagaagaagaacaaaagcaactggctctgccaaggttttcctttgacaaatcaacaagacatgctcgtaaaatccaagaagtaggaaggatagccctcaagcctaagatggcagctctgacttaccccacaggaggtagtacggatgagaagcaaggcagagagacagcaacgtcagttgctcgcaggcattcagtcagctatatccctgatgtcaaaaatccatcaaaacagtcagaccagaaagtgtctaaaccagaaaaggataggattccaaatgttattgcaaagctgatgggcctggatgaacttcccaaaaatgaaaaagcaaaatccactaccacacagaaagacaacatccccaagaaaccaagagaaaggggagctgcaatagggcacacaatgcaggaaagcagtaagattgctggtgttaagaccaaagatggtgagaatctggtatccacaagtagacagaaagtggtagaaggcaataagaatccattgatgcagaaaaacactgcttttcttctgcaagcagaaaaggtcctgcctgccaacaacaatgttggccttgagatggttattcacgatggaaaacaatcctcaaaagacttgatgggaataaaacctgtgacaagatcaggaaagactaccaccatgaaaacagataagcagcaaagtgaccaattcagacagaacagcagtaagaataatcacgaaagagaaagaaagcaggatactatgaggtatggggaacaaaagttgcaggtaagaaaacaacaagatactgagatggtatccaagagcacatccaacaaggcagcaaagcagcctcacacaagccaagccagggtaaatagaaacagtatgatagaagttgttaatgccgtgcaacccagaggagttccaaatggcacttaccacgagaatctggtgagaagaaaaagttcagctgaattgaacatccatatgaatgattttcctcaaaaggactcggatcaagaaaatttaggcattccaccagctaggaaggagaaagctgttcatcatgcagcacccttacagaaggcaaaaactagaagagtgaataaaagtgaaattcctcgaagagtggatgaagtagtgaccagaagaaatggaacgctgaataagttgacaaggccaccaaaacaatctattttggagcaagtgacacatagaacccatgataaagtcagtggccacagtggagcagaaaagggtagagccagcaggttgaaacaagcagagccacgcatagtcaagtccaacaaatcaacagaaagcactcgaccactacatttggtacagaacctacagaaagaagctgagcctcctactttctatggtcacaatgaagacgaattccgaagcctccgagaaccaaaaactctggtcccacgtgacagtcgtcaaaattcaatctcagtagtacctaacgatcaacatgatcaagtaccaatctttggagctgatgagtgcattacatcaccaaatgcacttaacggaacccaatcaacccatgaagacaccttggatatttcatccacattgcaattggagcaacagaaggctttcaaatggagaaaacaagagccacttagagaaactgaaatccttctcaagcagatagtgatccagagccaactgttcctcaacacagcagaggcacttttcagactcgaaatccctttcggaattctccacgctagtagtagcgactacgatcacgagtacaagtacatcactcatcccgaagacattaagctcacattggttgcacgaacccaatcaacccatgaagacaccttggatatttcatccacattgcaattggagcaacagaaggctttcaaatggagaaaacaagagccacttagagaaactgaaatccttctcaagcagatagtgatccagagccaactgttcctcaacacagcagaggcacttttcagactcgaaatccctttcggaattctccacgctagtagtagcgactacgatcatgagtacaagtacataactcatcccgaagacattaagctcacattagactgcagctacgagataatgaaaagaaaaggtaaaaggcaagagctcgctgtgcatcccaattttgtgaaggtatccataagcttcactcaggtccagtctctggatgagctggttaagcagttgagtaaagacattgataagctgaaactgtatgggaagaatggaaaactggaatgtggggttgaagagtatgtgcctagaatgcttgaattcgacgtgaataacagggagcctgagctgaattgtatgtgggatttgggttgggatgtgaccatgtttgggtttgttgaagtggatgaagttgtgagggatttggagaggggtgtgctcagtggacttgttgatgagcttaccagagacctctttcatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

1062

Amino Acids

120.28

Weight (kDa)

9.33

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	913
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	4 cut(s)	195, 663, 1498, 1983
AccB7I	CCANNNNNTGG	2 cut(s)	2225, 2914
AccI	GTMKAC	1 cut(s)	1210
AclWI	GGATC	7 cut(s)	154, 405, 418, 535, 1746, 2389, 2665
AcoI	YGGCCR	2 cut(s)	678, 1960
AcsI	RAATTY	8 cut(s)	493, 1747, 1839, 2123, 2176, 2457, 2733, 3023
AcuI	CTGAAG	1 cut(s)	651
AcvI	CACGTG	1 cut(s)	2162
AfaI	GTAC	9 cut(s)	458, 883, 2067, 2193, 2217, 2495, 2501, 2771, 2777
AfiI	CCNNNNNNNGG	9 cut(s)	189, 204, 690, 875, 1318, 1591, 2225, 2914, 3093
AflIII	ACRYGT	1 cut(s)	453
AhlI	ACTAGT	1 cut(s)	176
AjiI	CACGTC	1 cut(s)	3031
AjnI	CCWGG	2 cut(s)	1041, 1589
Alw21I	GWGCWC	4 cut(s)	86, 1550, 2859, 3144
Alw26I	GTCTC	3 cut(s)	899, 2916, 3165
AlwI	GGATC	7 cut(s)	154, 405, 418, 535, 1746, 2389, 2665
AlwNI	CAGNNNCTG	1 cut(s)	2914
AoxI	GGCC	6 cut(s)	615, 678, 1039, 1309, 1901, 1960
ApeKI	GCWGC	9 cut(s)	31, 68, 854, 1127, 1414, 1562, 1570, 1793, 2817
ApoI	RAATTY	8 cut(s)	493, 1747, 1839, 2123, 2176, 2457, 2733, 3023
ArsI	GACNNNNNNTTYG	2 cut(s)	682, 714
Asp700I	GAANNNNTTC	6 cut(s)	358, 1687, 2333, 2376, 2609, 2652
AspLEI	GCGC	2 cut(s)	25, 79
AspS9I	GGNCC	5 cut(s)	615, 1039, 1285, 2155, 2905
AsuHPI	GGTGA	5 cut(s)	340, 743, 1199, 1687, 2241
AvaII	GGWCC	3 cut(s)	1285, 2155, 2905
BaeGI	GKGCMC	2 cut(s)	526, 1140
BalI	TGGCCA	2 cut(s)	680, 1962
BamHI	GGATCC	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	86, 2859
BauI	CACGAG	2 cut(s)	1664, 2489
BbrPI	CACGTG	1 cut(s)	2162
BbsI	GAAGAC	6 cut(s)	741, 2124, 2292, 2523, 2568, 2799
Bbv12I	GWGCWC	4 cut(s)	86, 1550, 2859, 3144
BbvI	GCAGC	9 cut(s)	18, 55, 866, 1114, 1426, 1574, 1582, 1805, 2829
BceAI	ACGGC	1 cut(s)	1613
BciT130I	CCWGG	2 cut(s)	1043, 1591
BciVI	GTATCC	5 cut(s)	148, 1210, 1471, 1549, 2896
BclI	TGATCA	1 cut(s)	2209
BcoDI	GTCTC	3 cut(s)	899, 2916, 3165
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	7 cut(s)	177, 713, 1767, 1818, 2469, 2745, 3012
BfmI	CTRYAG	4 cut(s)	108, 656, 2075, 2815
BfuAI	ACCTGC	4 cut(s)	195, 663, 1498, 1983
BfuI	GTATCC	5 cut(s)	148, 1210, 1471, 1549, 2896
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	9 cut(s)	32, 69, 855, 1128, 1415, 1563, 1571, 1794, 2818
BlpI	GCTNAGC	1 cut(s)	2088
BlsI	GCNGC	9 cut(s)	33, 70, 856, 1129, 1416, 1564, 1572, 1795, 2819
Bme1390I	CCNGG	2 cut(s)	1043, 1591
Bme18I	GGWCC	3 cut(s)	1285, 2155, 2905
BmgBI	CACGTC	1 cut(s)	3031
BmgT120I	GGNCC	5 cut(s)	615, 1039, 1285, 2155, 2905
BmiI	GGNNCC	7 cut(s)	194, 337, 412, 616, 2157, 2269, 3045
BmrFI	CCNGG	2 cut(s)	1043, 1591
BmrI	ACTGGG	2 cut(s)	198, 469
BmsI	GCATC	3 cut(s)	103, 1236, 2875
BmuI	ACTGGG	2 cut(s)	198, 469
BoxI	GACNNNNGTC	1 cut(s)	2169
BpiI	GAAGAC	6 cut(s)	741, 2124, 2292, 2523, 2568, 2799
Bpu10I	CCTNAGC	1 cut(s)	3048
Bpu1102I	GCTNAGC	1 cut(s)	2088
BpuEI	CTTGAG	6 cut(s)	347, 658, 824, 1334, 2366, 2642
BsaAI	YACGTR	1 cut(s)	2162
BsaBI	GATNNNNATC	2 cut(s)	2393, 2669
BsaI	GGTCTC	1 cut(s)	3165
BsaJI	CCNNGG	8 cut(s)	166, 306, 414, 618, 773, 1590, 2292, 2568
Bsc4I	CCNNNNNNNGG	9 cut(s)	189, 204, 690, 875, 1318, 1591, 2225, 2914, 3093
Bse1I	ACTGG	6 cut(s)	193, 217, 464, 768, 2908, 2988
Bse3DI	GCAATG	4 cut(s)	108, 707, 2309, 2585
Bse8I	GATNNNNATC	2 cut(s)	2393, 2669
BseBI	CCWGG	2 cut(s)	1043, 1591
BseDI	CCNNGG	8 cut(s)	166, 306, 414, 618, 773, 1590, 2292, 2568
BseJI	GATNNNNATC	2 cut(s)	2393, 2669
BseLI	CCNNNNNNNGG	9 cut(s)	189, 204, 690, 875, 1318, 1591, 2225, 2914, 3093
BseMI	GCAATG	4 cut(s)	108, 707, 2309, 2585
BseMII	CTCAG	7 cut(s)	297, 1521, 2079, 2199, 2915, 3039, 3157
BseNI	ACTGG	6 cut(s)	193, 217, 464, 768, 2908, 2988
BseRI	GAGGAG	1 cut(s)	1656
BseSI	GKGCMC	2 cut(s)	526, 1140
BseXI	GCAGC	9 cut(s)	18, 55, 866, 1114, 1426, 1574, 1582, 1805, 2829
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	6 cut(s)	617, 680, 1041, 1311, 1903, 1962
BsiHKAI	GWGCWC	4 cut(s)	86, 1550, 2859, 3144
BslFI	GGGAC	1 cut(s)	2141
BslI	CCNNNNNNNGG	9 cut(s)	189, 204, 690, 875, 1318, 1591, 2225, 2914, 3093
BsmAI	GTCTC	3 cut(s)	899, 2916, 3165
BsmFI	GGGAC	1 cut(s)	2141
BsmI	GAATGC	4 cut(s)	648, 931, 1755, 3021
BsnI	GGCC	6 cut(s)	617, 680, 1041, 1311, 1903, 1962
Bso31I	GGTCTC	1 cut(s)	3165
Bsp1286I	GDGCHC	6 cut(s)	86, 526, 1140, 1550, 2859, 3144
Bsp1720I	GCTNAGC	1 cut(s)	2088
Bsp19I	CCATGG	4 cut(s)	166, 306, 414, 618
BspANI	GGCC	6 cut(s)	617, 680, 1041, 1311, 1903, 1962
BspCNI	CTCAG	7 cut(s)	296, 1522, 2080, 2198, 2914, 3040, 3156
BspHI	TCATGA	1 cut(s)	2764
BspLI	GGNNCC	7 cut(s)	194, 337, 412, 616, 2157, 2269, 3045
BspMAI	CTGCAG	2 cut(s)	660, 2819
BspMI	ACCTGC	4 cut(s)	195, 663, 1498, 1983
BspPI	GGATC	7 cut(s)	154, 405, 418, 535, 1746, 2389, 2665
BspTNI	GGTCTC	1 cut(s)	3165
BsrDI	GCAATG	4 cut(s)	108, 707, 2309, 2585
BsrI	ACTGG	6 cut(s)	193, 217, 464, 768, 2908, 2988
BssECI	CCNNGG	8 cut(s)	166, 306, 414, 618, 773, 1590, 2292, 2568
BssSI	CACGAG	2 cut(s)	1664, 2489
BssT1I	CCWWGG	7 cut(s)	166, 306, 414, 618, 773, 2292, 2568
Bst2BI	CACGAG	2 cut(s)	1664, 2489
Bst2UI	CCWGG	2 cut(s)	1043, 1591
Bst4CI	ACNGT	9 cut(s)	92, 606, 975, 1607, 1967, 2168, 2409, 2685, 2964
Bst6I	CTCTTC	5 cut(s)	2, 624, 1816, 1843, 2994
BstAPI	GCANNNNNTGC	2 cut(s)	31, 1144
BstBAI	YACGTR	1 cut(s)	2162
BstC8I	GCNNGC	7 cut(s)	553, 925, 929, 1275, 1293, 1990, 2859
BstDSI	CCRYGG	4 cut(s)	166, 306, 414, 618
BstENI	CCTNNNNNAGG	1 cut(s)	688
BstHHI	GCGC	2 cut(s)	25, 79
BstMAI	GTCTC	3 cut(s)	899, 2916, 3165
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 74, 113, 1144, 2320, 2596, 2863, 2929, 3016
BstNI	CCWGG	2 cut(s)	1043, 1591
BstNSI	RCATGY	2 cut(s)	457, 806
BstPAI	GACNNNNGTC	1 cut(s)	2169
BstSCI	CCNGG	2 cut(s)	1041, 1589
BstSFI	CTRYAG	4 cut(s)	108, 656, 2075, 2815
BstSLI	GKGCMC	2 cut(s)	526, 1140
BstV1I	GCAGC	9 cut(s)	18, 55, 866, 1114, 1426, 1574, 1582, 1805, 2829
BstV2I	GAAGAC	6 cut(s)	741, 2124, 2292, 2523, 2568, 2799
BstX2I	RGATCY	3 cut(s)	298, 410, 540
BstXI	CCANNNNNNTGG	2 cut(s)	313, 625
BstYI	RGATCY	3 cut(s)	298, 410, 540
BsuI	GTATCC	5 cut(s)	148, 1210, 1471, 1549, 2896
BsuRI	GGCC	6 cut(s)	617, 680, 1041, 1311, 1903, 1962
BtgI	CCRYGG	4 cut(s)	166, 306, 414, 618
BtrI	CACGTC	1 cut(s)	3031
BtsI	GCAGTG	1 cut(s)	1257
BtsIMutI	CAGTG	5 cut(s)	384, 1257, 1963, 1972, 3151
BveI	ACCTGC	4 cut(s)	195, 663, 1498, 1983
Cac8I	GCNNGC	7 cut(s)	553, 925, 929, 1275, 1293, 1990, 2859
CaiI	CAGNNNCTG	1 cut(s)	2914
CciI	TCATGA	1 cut(s)	2764
CfoI	GCGC	2 cut(s)	25, 79
Cfr13I	GGNCC	5 cut(s)	615, 1039, 1285, 2155, 2905
Csp6I	GTAC	9 cut(s)	457, 882, 2066, 2192, 2216, 2494, 2500, 2770, 2776
CspCI	CAANNNNNGTGG	2 cut(s)	2043, 2078
CviQI	GTAC	9 cut(s)	457, 882, 2066, 2192, 2216, 2494, 2500, 2770, 2776
DraI	TTTAAA	1 cut(s)	610
DrdI	GACNNNNNNGTC	1 cut(s)	913
DseDI	GACNNNNNNGTC	1 cut(s)	913
EaeI	YGGCCR	2 cut(s)	678, 1960
Eam1104I	CTCTTC	5 cut(s)	2, 624, 1816, 1843, 2994
EarI	CTCTTC	5 cut(s)	2, 624, 1816, 1843, 2994
Ecl136II	GAGCTC	2 cut(s)	84, 2857
Eco130I	CCWWGG	7 cut(s)	166, 306, 414, 618, 773, 2292, 2568
Eco24I	GRGCYC	2 cut(s)	86, 2859
Eco31I	GGTCTC	1 cut(s)	3165
Eco47I	GGWCC	3 cut(s)	1285, 2155, 2905
Eco53kI	GAGCTC	2 cut(s)	84, 2857
Eco57I	CTGAAG	1 cut(s)	651
Eco72I	CACGTG	1 cut(s)	2162
EcoICRI	GAGCTC	2 cut(s)	84, 2857
EcoNI	CCTNNNNNAGG	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	1285
EcoRI	GAATTC	4 cut(s)	2123, 2457, 2733, 3023
EcoRII	CCWGG	2 cut(s)	1041, 1589
EcoT14I	CCWWGG	7 cut(s)	166, 306, 414, 618, 773, 2292, 2568
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	86, 2859
ErhI	CCWWGG	7 cut(s)	166, 306, 414, 618, 773, 2292, 2568
FalI	AAGNNNNNCTT	4 cut(s)	2343, 2375, 2619, 2651
FaqI	GGGAC	1 cut(s)	2141
FauNDI	CATATG	4 cut(s)	118, 675, 1710, 3183
FbaI	TGATCA	1 cut(s)	2209
FblI	GTMKAC	1 cut(s)	1210
Fnu4HI	GCNGC	9 cut(s)	32, 69, 855, 1128, 1415, 1563, 1571, 1794, 2818
FriOI	GRGCYC	2 cut(s)	86, 2859
Fsp4HI	GCNGC	9 cut(s)	32, 69, 855, 1128, 1415, 1563, 1571, 1794, 2818
FspBI	CTAG	7 cut(s)	177, 713, 1767, 1818, 2469, 2745, 3012
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 78
GluI	GCNGC	9 cut(s)	32, 69, 855, 1128, 1415, 1563, 1571, 1794, 2818
HaeIII	GGCC	6 cut(s)	617, 680, 1041, 1311, 1903, 1962
HhaI	GCGC	2 cut(s)	25, 79
Hin6I	GCGC	2 cut(s)	23, 77
HinP1I	GCGC	2 cut(s)	23, 77
HincII	GTYRAC	3 cut(s)	210, 451, 1896
HindII	GTYRAC	3 cut(s)	210, 451, 1896
HindIII	AAGCTT	3 cut(s)	243, 663, 2893
HphI	GGTGA	5 cut(s)	340, 743, 1199, 1687, 2241
Hpy166II	GTNNAC	6 cut(s)	210, 451, 652, 1211, 1896, 3149
Hpy8I	GTNNAC	6 cut(s)	210, 451, 652, 1211, 1896, 3149
Hpy99I	CGWCG	1 cut(s)	3032
HpyCH4III	ACNGT	9 cut(s)	92, 606, 975, 1607, 1967, 2168, 2409, 2685, 2964
HpyCH4IV	ACGT	3 cut(s)	914, 2161, 3030
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 74, 113, 1144, 2320, 2596, 2863, 2929, 3016
HpySE526I	ACGT	3 cut(s)	914, 2161, 3030
HspAI	GCGC	2 cut(s)	23, 77
Ksp22I	TGATCA	1 cut(s)	2209
LmnI	GCTCC	9 cut(s)	335, 560, 1124, 1924, 1970, 2228, 2320, 2596, 3043
Lsp1109I	GCAGC	9 cut(s)	18, 55, 866, 1114, 1426, 1574, 1582, 1805, 2829
LweI	GCATC	3 cut(s)	103, 1236, 2875
MaeI	CTAG	7 cut(s)	177, 713, 1767, 1818, 2469, 2745, 3012
MaeII	ACGT	3 cut(s)	914, 2161, 3030
MaeIII	GTNAC	7 cut(s)	1372, 1421, 1864, 1930, 2108, 2162, 3082
MfeI	CAATTG	2 cut(s)	2315, 2591
MflI	RGATCY	3 cut(s)	298, 410, 540
MhlI	GDGCHC	6 cut(s)	86, 526, 1140, 1550, 2859, 3144
MlsI	TGGCCA	2 cut(s)	680, 1962
MluNI	TGGCCA	2 cut(s)	680, 1962
MlyI	GAGTC	4 cut(s)	641, 1727, 2433, 2709
MmeI	TCCRAC	2 cut(s)	1578, 2052
Mox20I	TGGCCA	2 cut(s)	680, 1962
Mph1103I	ATGCAT	1 cut(s)	118
MroXI	GAANNNNTTC	6 cut(s)	358, 1687, 2333, 2376, 2609, 2652
MscI	TGGCCA	2 cut(s)	680, 1962
MseI	TTAA	8 cut(s)	567, 609, 1173, 1623, 2262, 2523, 2799, 2928
MslI	CAYNNNNRTG	2 cut(s)	1709, 1713
Msp20I	TGGCCA	2 cut(s)	680, 1962
MspA1I	CMGCKG	1 cut(s)	1694
MspR9I	CCNGG	2 cut(s)	1043, 1591
MunI	CAATTG	2 cut(s)	2315, 2591
Mva1269I	GAATGC	4 cut(s)	648, 931, 1755, 3021
MvaI	CCWGG	2 cut(s)	1043, 1591
MwoI	GCNNNNNNNGC	9 cut(s)	31, 74, 113, 1144, 2320, 2596, 2863, 2929, 3016
NcoI	CCATGG	4 cut(s)	166, 306, 414, 618
NdeI	CATATG	4 cut(s)	118, 675, 1710, 3183
NlaIV	GGNNCC	7 cut(s)	194, 337, 412, 616, 2157, 2269, 3045
NmuCI	GTSAC	7 cut(s)	1372, 1421, 1864, 1930, 2108, 2162, 3082
NsbI	TGCGCA	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	2 cut(s)	457, 806
PagI	TCATGA	1 cut(s)	2764
PciI	ACATGT	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	2167
PctI	GAATGC	4 cut(s)	648, 931, 1755, 3021
PdmI	GAANNNNTTC	6 cut(s)	358, 1687, 2333, 2376, 2609, 2652
PfeI	GAWTC	6 cut(s)	394, 702, 1012, 1192, 1237, 1669
PflMI	CCANNNNNTGG	2 cut(s)	2225, 2914
PkrI	GCNGC	9 cut(s)	33, 70, 856, 1129, 1416, 1564, 1572, 1795, 2819
PleI	GAGTC	4 cut(s)	640, 1727, 2433, 2709
PmaCI	CACGTG	1 cut(s)	2162
PmlI	CACGTG	1 cut(s)	2162
PpsI	GAGTC	4 cut(s)	640, 1727, 2433, 2709
Ppu21I	YACGTR	1 cut(s)	2162
PpuMI	RGGWCCY	1 cut(s)	1285
PscI	ACATGT	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	2169
Psp124BI	GAGCTC	2 cut(s)	86, 2859
Psp5II	RGGWCCY	1 cut(s)	1285
Psp6I	CCWGG	2 cut(s)	1041, 1589
PspCI	CACGTG	1 cut(s)	2162
PspGI	CCWGG	2 cut(s)	1041, 1589
PspN4I	GGNNCC	7 cut(s)	194, 337, 412, 616, 2157, 2269, 3045
PspPI	GGNCC	5 cut(s)	615, 1039, 1285, 2155, 2905
PspPPI	RGGWCCY	1 cut(s)	1285
PstI	CTGCAG	2 cut(s)	660, 2819
PstNI	CAGNNNCTG	1 cut(s)	2914
PsuI	RGATCY	3 cut(s)	298, 410, 540
PvuII	CAGCTG	1 cut(s)	1694
RsaI	GTAC	9 cut(s)	458, 883, 2067, 2193, 2217, 2495, 2501, 2771, 2777
RsaNI	GTAC	9 cut(s)	457, 882, 2066, 2192, 2216, 2494, 2500, 2770, 2776
RseI	CAYNNNNRTG	2 cut(s)	1709, 1713
SacI	GAGCTC	2 cut(s)	86, 2859
SaqAI	TTAA	8 cut(s)	567, 609, 1173, 1623, 2262, 2523, 2799, 2928
SatI	GCNGC	9 cut(s)	32, 69, 855, 1128, 1415, 1563, 1571, 1794, 2818
Sau96I	GGNCC	5 cut(s)	615, 1039, 1285, 2155, 2905
SbfI	CCTGCAGG	1 cut(s)	660
SchI	GAGTC	4 cut(s)	641, 1727, 2433, 2709
ScrFI	CCNGG	2 cut(s)	1043, 1591
SdaI	CCTGCAGG	1 cut(s)	660
SduI	GDGCHC	6 cut(s)	86, 526, 1140, 1550, 2859, 3144
SfaNI	GCATC	3 cut(s)	103, 1236, 2875
SfcI	CTRYAG	4 cut(s)	108, 656, 2075, 2815
SinI	GGWCC	3 cut(s)	1285, 2155, 2905
SmiMI	CAYNNNNRTG	2 cut(s)	1709, 1713
SmlI	CTYRAG	6 cut(s)	326, 637, 839, 1313, 2381, 2657
SmoI	CTYRAG	6 cut(s)	326, 637, 839, 1313, 2381, 2657
SpeI	ACTAGT	1 cut(s)	176
Sse8387I	CCTGCAGG	1 cut(s)	660
SspMI	CTAG	7 cut(s)	177, 713, 1767, 1818, 2469, 2745, 3012
SstI	GAGCTC	2 cut(s)	86, 2859
StyD4I	CCNGG	2 cut(s)	1041, 1589
StyI	CCWWGG	7 cut(s)	166, 306, 414, 618, 773, 2292, 2568
TaaI	ACNGT	9 cut(s)	92, 606, 975, 1607, 1967, 2168, 2409, 2685, 2964
TaiI	ACGT	3 cut(s)	917, 2164, 3033
TaqI	TCGA	6 cut(s)	700, 1846, 2050, 2442, 2718, 3027
TatI	WGTACW	5 cut(s)	456, 2493, 2499, 2769, 2775
TfiI	GAWTC	6 cut(s)	394, 702, 1012, 1192, 1237, 1669
Tru1I	TTAA	8 cut(s)	567, 609, 1173, 1623, 2262, 2523, 2799, 2928
Tru9I	TTAA	8 cut(s)	567, 609, 1173, 1623, 2262, 2523, 2799, 2928
TscAI	CASTG	5 cut(s)	384, 1264, 1963, 1972, 3151
TseFI	GTSAC	7 cut(s)	1372, 1421, 1864, 1930, 2108, 2162, 3082
TseI	GCWGC	9 cut(s)	31, 68, 854, 1127, 1414, 1562, 1570, 1793, 2817
Tsp45I	GTSAC	7 cut(s)	1372, 1421, 1864, 1930, 2108, 2162, 3082
TspGWI	ACGGA	2 cut(s)	899, 2280
TspRI	CASTG	5 cut(s)	384, 1264, 1963, 1972, 3151
Van91I	CCANNNNNTGG	2 cut(s)	2225, 2914
VpaK11BI	GGWCC	3 cut(s)	1285, 2155, 2905
XagI	CCTNNNNNAGG	1 cut(s)	688
XapI	RAATTY	8 cut(s)	493, 1747, 1839, 2123, 2176, 2457, 2733, 3023
XceI	RCATGY	2 cut(s)	457, 806
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2314, 2590
XmiI	GTMKAC	1 cut(s)	1210
XmnI	GAANNNNTTC	6 cut(s)	358, 1687, 2333, 2376, 2609, 2652
XspI	CTAG	7 cut(s)	177, 713, 1767, 1818, 2469, 2745, 3012
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.