Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006254.1

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

13278 .. 14215

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006254.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgaaggcgcaaaacgatgcatatgcttattccaagcaaacttatagaggatcaagggatacaaaaacccatggaataactagttccagaactgggaacccccagagcaggtcagctggaagtagtagaacacctattcgtcaagaagcttcaaaccagatggttgcttataggagaggtgggaactcaggacaaatagtagatctttccatggccttggcttttgcacttgagaatggagccacaaatctcaccagaacaagttcatcaagcaaaagttcagtgatggggtttctgaatcaaattggtaggggatccatggacttcaacaaaatggaaagaaagggaaatttcaacatgtactggggttcaagtagtcagttccctaacctttcaagtttccatatagaagaaatatccagaggggcacagaaactaaaccagatccttagagcttgctccaatggtgttaatgctgataagttttcaatagagatcgggaaggaactgtttaaaggggccatggatttggaagagtccttgagaatgcttgtggacctgcaggaagcttctgaacatatgaccacctcccaaaggaaaagtcggatcacattgctagacgaagatgaagatggtgaagaccaaatagaagaagaacaaaagcaactggctctgccaaggtttcctttgacaaatcagctagacatgctcgtaaaatccaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

242

Amino Acids

26.98

Weight (kDa)

8.92

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	99, 567
AclWI	GGATC	5 cut(s)	58, 309, 322, 439, 614
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	93, 108, 594
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	6 cut(s)	153, 328, 355, 372, 396, 489
AhlI	ACTAGT	1 cut(s)	80
AluBI	AGCT	5 cut(s)	116, 149, 455, 569, 700
AluI	AGCT	5 cut(s)	116, 149, 455, 569, 700
AlwI	GGATC	5 cut(s)	58, 309, 322, 439, 614
AoxI	GGCC	2 cut(s)	213, 519
ApoI	RAATTY	1 cut(s)	349
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
Asp700I	GAANNNNTTC	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	519, 556
AsuHPI	GGTGA	2 cut(s)	244, 647
AvaII	GGWCC	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	645
BccI	CCATC	3 cut(s)	154, 280, 626
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciVI	GTATCC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	3 cut(s)	81, 617, 701
BfmI	CTRYAG	1 cut(s)	560
BfuAI	ACCTGC	2 cut(s)	99, 567
BfuI	GTATCC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	519, 556
BmiI	GGNNCC	4 cut(s)	98, 241, 316, 520
BmrI	ACTGGG	2 cut(s)	102, 373
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	2 cut(s)	102, 373
BpiI	GAAGAC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	251, 562
BsaJI	CCNNGG	6 cut(s)	70, 210, 216, 318, 522, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 108, 594
Bse1I	ACTGG	3 cut(s)	97, 368, 672
Bse3DI	GCAATG	1 cut(s)	611
BseDI	CCNNGG	6 cut(s)	70, 210, 216, 318, 522, 677
BseLI	CCNNNNNNNGG	3 cut(s)	93, 108, 594
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	97, 368, 672
BseSI	GKGCMC	1 cut(s)	430
BshFI	GGCC	2 cut(s)	215, 521
BslI	CCNNNNNNNGG	3 cut(s)	93, 108, 594
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	215, 521
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
Bsp19I	CCATGG	4 cut(s)	70, 210, 318, 522
BspANI	GGCC	2 cut(s)	215, 521
BspCNI	CTCAG	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	98, 241, 316, 520
BspMAI	CTGCAG	1 cut(s)	564
BspMI	ACCTGC	2 cut(s)	99, 567
BspPI	GGATC	5 cut(s)	58, 309, 322, 439, 614
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	3 cut(s)	97, 368, 672
BssECI	CCNNGG	6 cut(s)	70, 210, 216, 318, 522, 677
BssMI	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
BssT1I	CCWWGG	6 cut(s)	70, 210, 216, 318, 522, 677
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	187, 449
BstDSI	CCRYGG	4 cut(s)	70, 210, 318, 522
BstENI	CCTNNNNNAGG	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	6 cut(s)	53, 205, 317, 447, 498, 609
BstMBI	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	706
BstNSI	RCATGY	2 cut(s)	361, 709
BstSFI	CTRYAG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	3 cut(s)	202, 314, 444
BstXI	CCANNNNNNTGG	2 cut(s)	217, 529
BstYI	RGATCY	3 cut(s)	202, 314, 444
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	215, 521
BtgI	CCRYGG	4 cut(s)	70, 210, 318, 522
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	2 cut(s)	99, 567
Cac8I	GCNNGC	1 cut(s)	457
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	519, 556
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	6 cut(s)	71, 211, 319, 358, 523, 706
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	187, 449
DpnI	GATC	6 cut(s)	52, 204, 316, 446, 497, 608
DpnII	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
DraI	TTTAAA	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	6 cut(s)	70, 210, 216, 318, 522, 677
Eco47I	GGWCC	1 cut(s)	556
EcoNI	CCTNNNNNAGG	1 cut(s)	592
EcoT14I	CCWWGG	6 cut(s)	70, 210, 216, 318, 522, 677
EcoT22I	ATGCAT	1 cut(s)	22
ErhI	CCWWGG	6 cut(s)	70, 210, 216, 318, 522, 677
FaeI	CATG	6 cut(s)	74, 214, 322, 361, 526, 709
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FatI	CATG	6 cut(s)	70, 210, 318, 357, 522, 705
FauNDI	CATATG	2 cut(s)	22, 579
FspBI	CTAG	3 cut(s)	81, 617, 701
GlaI	GCGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	215, 521
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	6 cut(s)	74, 214, 322, 361, 526, 709
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	2 cut(s)	147, 567
HinfI	GANTC	2 cut(s)	298, 536
HphI	GGTGA	2 cut(s)	244, 647
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	3 cut(s)	297, 574, 606
Hpy188III	TCNNGA	5 cut(s)	87, 143, 189, 420, 499
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	20, 227, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	706
HpyF3I	CTNAG	2 cut(s)	187, 449
Hsp92II	CATG	6 cut(s)	74, 214, 322, 361, 526, 709
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
LmnI	GCTCC	2 cut(s)	239, 464
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	3 cut(s)	81, 617, 701
MalI	GATC	6 cut(s)	52, 204, 316, 446, 497, 608
MboI	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
MboII	GAAGA	7 cut(s)	422, 545, 635, 641, 650, 662, 665
MflI	RGATCY	3 cut(s)	202, 314, 444
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	2 cut(s)	303, 349
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	584
MnlI	CCTC	4 cut(s)	41, 170, 416, 598
Mph1103I	ATGCAT	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	262
MseI	TTAA	2 cut(s)	471, 513
MspA1I	CMGCKG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	706
NcoI	CCATGG	4 cut(s)	70, 210, 318, 522
NdeI	CATATG	2 cut(s)	22, 579
NdeII	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
NlaIII	CATG	6 cut(s)	74, 214, 322, 361, 526, 709
NlaIV	GGNNCC	4 cut(s)	98, 241, 316, 520
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	2 cut(s)	361, 709
PciI	ACATGT	1 cut(s)	357
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PscI	ACATGT	1 cut(s)	357
PspN4I	GGNNCC	4 cut(s)	98, 241, 316, 520
PspPI	GGNCC	2 cut(s)	519, 556
PstI	CTGCAG	1 cut(s)	564
PsuI	RGATCY	3 cut(s)	202, 314, 444
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	471, 513
Sau3AI	GATC	6 cut(s)	50, 202, 314, 444, 495, 606
Sau96I	GGNCC	2 cut(s)	519, 556
SbfI	CCTGCAGG	1 cut(s)	564
SchI	GAGTC	1 cut(s)	545
SdaI	CCTGCAGG	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	1 cut(s)	560
SinI	GGWCC	1 cut(s)	556
SmlI	CTYRAG	2 cut(s)	230, 541
SmoI	CTYRAG	2 cut(s)	230, 541
SpeI	ACTAGT	1 cut(s)	80
Sse8387I	CCTGCAGG	1 cut(s)	564
Sse9I	AATT	2 cut(s)	303, 349
SspMI	CTAG	3 cut(s)	81, 617, 701
StyI	CCWWGG	6 cut(s)	70, 210, 216, 318, 522, 677
TaaI	ACNGT	1 cut(s)	510
TasI	AATT	2 cut(s)	303, 349
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	2 cut(s)	471, 513
Tru9I	TTAA	2 cut(s)	471, 513
TscAI	CASTG	1 cut(s)	288
TspDTI	ATGAA	3 cut(s)	17, 255, 642
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	592
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	2 cut(s)	361, 709
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	3 cut(s)	81, 617, 701
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.