Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

60914573 .. 60915584

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG413200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCAGCGTCAAAACTCAGTCTCAGTAGTACCTAACGATCAACATGATCAAATACCAAACTTTGGAGCTGATGAGTGCATTACGTCACTTAATGGAACCCAATCAACCCATGAAGACAACTTGGATATTTCATCCACATTGCAATTGGAGCAACAGAAGCCTTTCAAATGGAGAAAACAAAAGCCACTTACAGAAACTGAAATCCTTCTCAAGCAGATAGTAATCCAGAGCCAACTGTTCCTCAACACAGCAGAGGCACTTTTCAGACTCGAAATCCCTTTCGGAATTCTCCACGCTAGTAGTAGCGACTACGATCATGAGTACAACTACATCACTCATCCCGAAGACATTAAGCTCACATTAGACTGCAGCTACGAGATAATGAAAAGAAAAGGTAGAAGGCAAGAGCTCGCTGTGCATCCCAATTTTGTGAAGGTATCCATAAGCTTCACTCAGGTCCAGTCTCTGGATGAGCTGGTTAAGCAGTTGAGTAAAGACATTGATAAGCTGAAACTGTATGGGAAGAATGGAAAACTGGAATGTGGGGCTGAAGAGTATGTGCCTAGAATGCTTGAATTCGATGTGAATAACAGGGAGCCTAAGCTGAACTGTGTGTGGGATTTGGGTTGGGATGTGACCATGTTTGGGTTTGTTGAAGTGGATGAAGTTGTTAGGGATTTGGAGAGGGGTGTGCTCAGTGGACTTGTTGATGAGCTTACCAGAGACCCCTTTCATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

246

Amino Acids

28.44

Weight (kDa)

4.99

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	62, 466
AcsI	RAATTY	2 cut(s)	285, 575
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	30, 323
AfiI	CCNNNNNNNGG	3 cut(s)	62, 466, 645
AgsI	TTSAA	3 cut(s)	166, 575, 656
AluBI	AGCT	9 cut(s)	68, 355, 372, 409, 447, 475, 508, 604, 715
AluI	AGCT	9 cut(s)	68, 355, 372, 409, 447, 475, 508, 604, 715
Alw21I	GWGCWC	2 cut(s)	411, 696
Alw26I	GTCTC	3 cut(s)	25, 468, 717
AlwNI	CAGNNNCTG	2 cut(s)	197, 466
ApeKI	GCWGC	2 cut(s)	4, 369
ApoI	RAATTY	2 cut(s)	285, 575
Asp700I	GAANNNNTTC	2 cut(s)	161, 204
AspS9I	GGNCC	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	411
BbsI	GAAGAC	2 cut(s)	120, 351
Bbv12I	GWGCWC	2 cut(s)	411, 696
BbvI	GCAGC	2 cut(s)	16, 381
BciVI	GTATCC	1 cut(s)	448
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	25, 468, 717
BfaI	CTAG	2 cut(s)	297, 564
BfmI	CTRYAG	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	448
BisI	GCNGC	2 cut(s)	5, 370
BlsI	GCNGC	2 cut(s)	6, 371
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	97, 597
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	2 cut(s)	120, 351
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	717
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 466, 645
Bse1I	ACTGG	2 cut(s)	460, 540
Bse3DI	GCAATG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	221
BseGI	GGATG	6 cut(s)	131, 337, 418, 475, 637, 667
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	62, 466, 645
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	4 cut(s)	30, 36, 467, 709
BseNI	ACTGG	2 cut(s)	460, 540
BseXI	GCAGC	2 cut(s)	16, 381
BsiHKAI	GWGCWC	2 cut(s)	411, 696
BslI	CCNNNNNNNGG	3 cut(s)	62, 466, 645
BsmAI	GTCTC	3 cut(s)	25, 468, 717
BsmI	GAATGC	1 cut(s)	573
Bso31I	GGTCTC	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	411, 696
Bsp143I	GATC	3 cut(s)	37, 46, 313
BspCNI	CTCAG	4 cut(s)	29, 35, 466, 708
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	97, 597
BspMAI	CTGCAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	460, 540
BssMI	GATC	3 cut(s)	37, 46, 313
Bst4CI	ACNGT	3 cut(s)	237, 516, 611
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	5 cut(s)	16, 22, 453, 600, 695
BstF5I	GGATG	6 cut(s)	131, 337, 418, 475, 637, 667
BstKTI	GATC	3 cut(s)	40, 49, 316
BstMAI	GTCTC	3 cut(s)	25, 468, 717
BstMBI	GATC	3 cut(s)	37, 46, 313
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 157, 415, 481, 568
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	2 cut(s)	16, 381
BstV2I	GAAGAC	2 cut(s)	120, 351
BsuI	GTATCC	1 cut(s)	448
BtsCI	GGATG	6 cut(s)	131, 337, 418, 475, 637, 667
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	2 cut(s)	197, 466
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	29, 322
CviAII	CATG	4 cut(s)	44, 110, 317, 640
CviQI	GTAC	2 cut(s)	29, 322
DdeI	CTNAG	5 cut(s)	16, 22, 453, 600, 695
DpnI	GATC	3 cut(s)	39, 48, 315
DpnII	GATC	3 cut(s)	37, 46, 313
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	409
EcoRI	GAATTC	2 cut(s)	285, 575
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	4 cut(s)	47, 113, 320, 643
FaiI	YATR	9 cut(s)	45, 111, 318, 443, 519, 558, 641, 735, 737
FatI	CATG	4 cut(s)	43, 109, 316, 639
FauNDI	CATATG	1 cut(s)	735
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	5, 370
FokI	GGATG	6 cut(s)	118, 324, 405, 482, 644, 674
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	2 cut(s)	5, 370
FspBI	CTAG	2 cut(s)	297, 564
GluI	GCNGC	2 cut(s)	5, 370
Hin1II	CATG	4 cut(s)	47, 113, 320, 643
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	701
Hpy188I	TCNGA	2 cut(s)	266, 284
Hpy188III	TCNNGA	4 cut(s)	226, 317, 341, 467
Hpy8I	GTNNAC	1 cut(s)	701
HpyAV	CCTTC	3 cut(s)	215, 393, 427
HpyCH4III	ACNGT	3 cut(s)	237, 516, 611
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	4, 78, 142, 369, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 157, 415, 481, 568
HpyF3I	CTNAG	5 cut(s)	16, 22, 453, 600, 695
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	47, 113, 320, 643
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	37, 46, 313
LmnI	GCTCC	3 cut(s)	65, 148, 595
LpnPI	CCDG	8 cut(s)	239, 440, 452, 461, 473, 521, 577, 733
Lsp1109I	GCAGC	2 cut(s)	16, 381
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	297, 564
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	84, 634
MalI	GATC	3 cut(s)	39, 48, 315
MboI	GATC	3 cut(s)	37, 46, 313
MboII	GAAGA	4 cut(s)	125, 356, 535, 563
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	411, 696
MluCI	AATT	4 cut(s)	143, 285, 424, 575
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	3 cut(s)	247, 251, 678
MroXI	GAANNNNTTC	2 cut(s)	161, 204
MseI	TTAA	3 cut(s)	90, 351, 480
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	573
MwoI	GCNNNNNNNGC	5 cut(s)	148, 157, 415, 481, 568
NdeI	CATATG	1 cut(s)	735
NdeII	GATC	3 cut(s)	37, 46, 313
NlaIII	CATG	4 cut(s)	47, 113, 320, 643
NlaIV	GGNNCC	2 cut(s)	97, 597
NmuCI	GTSAC	2 cut(s)	84, 634
PagI	TCATGA	1 cut(s)	316
PctI	GAATGC	1 cut(s)	573
PdmI	GAANNNNTTC	2 cut(s)	161, 204
PflMI	CCANNNNNTGG	2 cut(s)	62, 466
PkrI	GCNGC	2 cut(s)	6, 371
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	97, 597
PspPI	GGNCC	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	371
PstNI	CAGNNNCTG	2 cut(s)	197, 466
RsaI	GTAC	2 cut(s)	30, 323
RsaNI	GTAC	2 cut(s)	29, 322
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	90, 351, 480
SatI	GCNGC	2 cut(s)	5, 370
Sau3AI	GATC	3 cut(s)	37, 46, 313
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	1 cut(s)	261
SduI	GDGCHC	2 cut(s)	411, 696
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	143, 285, 424, 575
SspMI	CTAG	2 cut(s)	297, 564
SstI	GAGCTC	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	237, 516, 611
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	270, 579
TasI	AATT	4 cut(s)	143, 285, 424, 575
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	90, 351, 480
Tru9I	TTAA	3 cut(s)	90, 351, 480
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	2 cut(s)	84, 634
TseI	GCWGC	2 cut(s)	4, 369
Tsp45I	GTSAC	2 cut(s)	84, 634
TspDTI	ATGAA	5 cut(s)	120, 126, 398, 678, 722
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	2 cut(s)	62, 466
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	2 cut(s)	285, 575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmnI	GAANNNNTTC	2 cut(s)	161, 204
XspI	CTAG	2 cut(s)	297, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.